Task 38628093

Name	cdk8_A11_A26_r0_3-QUICO_ATM_OpenFF23_NAGL_cdk8-1-6-RND7716_2
Workunit	31577795
Created	24 Apr 2026, 15:51:43 UTC
Sent	24 Apr 2026, 15:52:01 UTC
Report deadline	29 Apr 2026, 15:52:01 UTC
Received	24 Apr 2026, 15:58:02 UTC
Server state	Over
Outcome	Computation error
Client state	Compute error
Exit status	195 (0x000000C3) EXIT_CHILD_FAILED
Computer ID	642764
Run time	1 min 6 sec
CPU time	14 sec
Validate state	Invalid
Credit	0.00
Device peak FLOPS	4,571.98 GFLOPS
Application version	ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121) x86_64-pc-linux-gnu
Peak working set size	19.99 MB
Peak swap size	27.97 MB
Peak disk usage	1.50 GB

Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<message>
process exited with code 195 (0xc3, -61)</message>
<stderr_txt>
2026-04-24 08:54:57 (158269): wrapper (8.1.26018): starting
2026-04-24 08:55:28 (158269): wrapper: running bin/python (bin/conda-unpack)
2026-04-24 08:55:28 (158269): wrapper: created child process 158288
2026-04-24 08:55:32 (158269): bin/python exited; CPU time 0.668352
2026-04-24 08:55:32 (158269): wrapper: running bin/tar (xjvf input.tar.bz2)
2026-04-24 08:55:32 (158269): wrapper: created child process 158289
2026-04-24 08:55:36 (158269): bin/tar exited; CPU time 3.512182
2026-04-24 08:55:36 (158269): wrapper: running bin/bash (run.sh)
2026-04-24 08:55:36 (158269): wrapper: created child process 158293
+ echo 'Setup environment'
+ source bin/activate
++ _conda_pack_activate
++ local _CONDA_SHELL_FLAVOR
++ '[' -n x ']'
++ _CONDA_SHELL_FLAVOR=bash
++ local script_dir
++ case "$_CONDA_SHELL_FLAVOR" in
+++ dirname bin/activate
++ script_dir=bin
+++ cd bin
+++ pwd
++ local full_path_script_dir=/var/lib/boinc-client/slots/0/bin
+++ dirname /var/lib/boinc-client/slots/0/bin
++ local full_path_env=/var/lib/boinc-client/slots/0
+++ basename /var/lib/boinc-client/slots/0
++ local env_name=0
++ '[' -n '' ']'
++ export CONDA_PREFIX=/var/lib/boinc-client/slots/0
++ CONDA_PREFIX=/var/lib/boinc-client/slots/0
++ export _CONDA_PACK_OLD_PS1=
++ _CONDA_PACK_OLD_PS1=
++ PATH=/var/lib/boinc-client/slots/0/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin:.
++ PS1='(0) '
++ case "$_CONDA_SHELL_FLAVOR" in
++ hash -r
++ local _script_dir=/var/lib/boinc-client/slots/0/etc/conda/activate.d
++ '[' -d /var/lib/boinc-client/slots/0/etc/conda/activate.d ']'
+ export PATH=/var/lib/boinc-client/slots/0:/var/lib/boinc-client/slots/0/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin:.
+ PATH=/var/lib/boinc-client/slots/0:/var/lib/boinc-client/slots/0/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin:.
+ echo 'Create a temporary directory'
+ export TMP=/var/lib/boinc-client/slots/0/tmp
+ TMP=/var/lib/boinc-client/slots/0/tmp
+ mkdir -p /var/lib/boinc-client/slots/0/tmp
+ echo 'Configure AToM'
+ echo localhost,0:0,1,CUDA,,/var/lib/boinc-client/slots/0/tmp
+ FILE=starting_sample
+ '[' -f starting_sample ']'
+ echo 'starting_sample does not exist.'
+ echo 'Install ATM and deps'
+ python -m pip list
+ python -m pip install pyaml -v
+ python -m pip install --no-dependencies atom-openmm -v
+ python -m pip list
+ echo 'Extract restart'
+ tar xjvf restart.tar.bz2

bzip2: Data integrity error when decompressing.
	Input file = (stdin), output file = (stdout)

It is possible that the compressed file(s) have become corrupted.
You can use the -tvv option to test integrity of such files.

You can use the `bzip2recover' program to attempt to recover
data from undamaged sections of corrupted files.

tar: Unexpected EOF in archive
tar: Unexpected EOF in archive
tar: Error is not recoverable: exiting now
+ true
+ echo 'Run AToM'
+ CONFIG_FILE=QB_A11_A26_input.yaml
+ python bin/rbfe_production QB_A11_A26_input.yaml
run.sh: line 34: 158337 Illegal instruction     (core dumped) python bin/rbfe_production $CONFIG_FILE
2026-04-24 08:56:02 (158269): bin/bash exited; CPU time 5.665932
2026-04-24 08:56:02 (158269): app exit status: 0x84
2026-04-24 08:56:02 (158269): called boinc_finish(195)

</stderr_txt>
]]>