Task 38627813

Name PTP1B_A01_A23_r0_3-QUICO_ATM_OpenFF23_NAGL_PTP1B-2-6-RND5106_0
Workunit 31577608
Created 24 Apr 2026, 13:28:51 UTC
Sent 24 Apr 2026, 13:29:30 UTC
Report deadline 29 Apr 2026, 13:29:30 UTC
Received 24 Apr 2026, 18:36:03 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 648092
Run time 2 hours 47 min 11 sec
CPU time 2 hours 47 min 11 sec
Validate state Valid
Credit 750,000.00
Device peak FLOPS 35,706.26 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 587.69 MB
Peak swap size 12.80 GB
Peak disk usage 2.99 GB

Stderr output

<core_client_version>8.2.9</core_client_version>
<![CDATA[
<stderr_txt>
10:49:32 (600): wrapper (7.9.26016): starting
10:49:32 (600): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A01_A23_0.pdb
QB_A01_A23_0.xml
QB_A01_A23.inpcrd
QB_A01_A23_input.yaml
QB_A01_A23.pdb
QB_A01_A23.prmtop
QB_A01_A23_sys.xml
run.bat
run.sh
10:49:33 (600): Library/usr/bin/tar.exe exited; CPU time 0.000000
10:49:33 (600): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
13:30:43 (600): C:/Windows/system32/cmd.exe exited; CPU time 10031.984375
13:30:43 (600): called boinc_finish(0)
0 bytes in 0 Free Blocks.
726 bytes in 8 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 111979491 bytes.
Dumping objects ->
{3835567} normal block at 0x000001B2439E4020, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835556} normal block at 0x000001B2439E3ED0, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835545} normal block at 0x000001B2439E3E60, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{3835534} normal block at 0x000001B2439E4100, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835523} normal block at 0x000001B2439E41E0, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{3835492} normal block at 0x000001B245816E70, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835481} normal block at 0x000001B2439E43D0, 235 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
..\api\boinc_api.cpp(309) : {3835478} normal block at 0x000001B2439DCE70, 8 bytes long.
 Data: <   D&#178;   > 00 00 05 44 B2 01 00 00 
{3834701} normal block at 0x000001B2439E4500, 235 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
{3833953} normal block at 0x000001B2439DD3C0, 8 bytes long.
 Data: < &#213;&#156;C&#178;   > 20 D5 9C 43 B2 01 00 00 
..\zip\boinc_zip.cpp(122) : {308} normal block at 0x000001B2439D1090, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{293} normal block at 0x000001B2439D1DF0, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{292} normal block at 0x000001B2439E55A0, 16 bytes long.
 Data: <&#200;^&#158;C&#178;           > C8 5E 9E 43 B2 01 00 00 00 00 00 00 00 00 00 00 
{291} normal block at 0x000001B2439E4BA0, 16 bytes long.
 Data: <&#160;^&#158;C&#178;           > A0 5E 9E 43 B2 01 00 00 00 00 00 00 00 00 00 00 
{290} normal block at 0x000001B2439E0E60, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{289} normal block at 0x000001B2439E4A60, 16 bytes long.
 Data: <x^&#158;C&#178;           > 78 5E 9E 43 B2 01 00 00 00 00 00 00 00 00 00 00 
{288} normal block at 0x000001B2439E5460, 16 bytes long.
 Data: <P^&#158;C&#178;           > 50 5E 9E 43 B2 01 00 00 00 00 00 00 00 00 00 00 
{287} normal block at 0x000001B2439E4A10, 16 bytes long.
 Data: <(^&#158;C&#178;           > 28 5E 9E 43 B2 01 00 00 00 00 00 00 00 00 00 00 
{286} normal block at 0x000001B2439E4880, 16 bytes long.
 Data: < ^&#158;C&#178;           > 00 5E 9E 43 B2 01 00 00 00 00 00 00 00 00 00 00 
{285} normal block at 0x000001B2439CC420, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{284} normal block at 0x000001B2439E5140, 16 bytes long.
 Data: <8&#252;&#156;C&#178;           > 38 FC 9C 43 B2 01 00 00 00 00 00 00 00 00 00 00 
{283} normal block at 0x000001B2439E0740, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{282} normal block at 0x000001B2439E4B50, 16 bytes long.
 Data: < &#252;&#156;C&#178;           > 10 FC 9C 43 B2 01 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x000001B2439E4E70, 16 bytes long.
 Data: <&#232;&#251;&#156;C&#178;           > E8 FB 9C 43 B2 01 00 00 00 00 00 00 00 00 00 00 
{279} normal block at 0x000001B2439E48D0, 16 bytes long.
 Data: <&#192;&#251;&#156;C&#178;           > C0 FB 9C 43 B2 01 00 00 00 00 00 00 00 00 00 00 
{278} normal block at 0x000001B2439E4B00, 16 bytes long.
 Data: < &#251;&#156;C&#178;           > 98 FB 9C 43 B2 01 00 00 00 00 00 00 00 00 00 00 
{277} normal block at 0x000001B2439E53C0, 16 bytes long.
 Data: <p&#251;&#156;C&#178;           > 70 FB 9C 43 B2 01 00 00 00 00 00 00 00 00 00 00 
{276} normal block at 0x000001B2439E4D30, 16 bytes long.
 Data: <H&#251;&#156;C&#178;           > 48 FB 9C 43 B2 01 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x000001B2439E06E0, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{274} normal block at 0x000001B2439E5550, 16 bytes long.
 Data: < &#251;&#156;C&#178;           > 20 FB 9C 43 B2 01 00 00 00 00 00 00 00 00 00 00 
{273} normal block at 0x000001B2439CFB20, 320 bytes long.
 Data: <PU&#158;C&#178;   &#224; &#158;C&#178;   > 50 55 9E 43 B2 01 00 00 E0 06 9E 43 B2 01 00 00 
{272} normal block at 0x000001B2439E5000, 16 bytes long.
 Data: <&#224;]&#158;C&#178;           > E0 5D 9E 43 B2 01 00 00 00 00 00 00 00 00 00 00 
{271} normal block at 0x000001B2439E50F0, 16 bytes long.
 Data: <&#184;]&#158;C&#178;           > B8 5D 9E 43 B2 01 00 00 00 00 00 00 00 00 00 00 
{270} normal block at 0x000001B2439E0800, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{269} normal block at 0x000001B2439E4EC0, 16 bytes long.
 Data: < ]&#158;C&#178;           > 90 5D 9E 43 B2 01 00 00 00 00 00 00 00 00 00 00 
{268} normal block at 0x000001B2439E0680, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{267} normal block at 0x000001B2439E4E20, 16 bytes long.
 Data: <&#216;\&#158;C&#178;           > D8 5C 9E 43 B2 01 00 00 00 00 00 00 00 00 00 00 
{266} normal block at 0x000001B2439E5190, 16 bytes long.
 Data: <&#176;\&#158;C&#178;           > B0 5C 9E 43 B2 01 00 00 00 00 00 00 00 00 00 00 
{265} normal block at 0x000001B2439E4C40, 16 bytes long.
 Data: < \&#158;C&#178;           > 88 5C 9E 43 B2 01 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x000001B2439E47E0, 16 bytes long.
 Data: <`\&#158;C&#178;           > 60 5C 9E 43 B2 01 00 00 00 00 00 00 00 00 00 00 
{263} normal block at 0x000001B2439E50A0, 16 bytes long.
 Data: <8\&#158;C&#178;           > 38 5C 9E 43 B2 01 00 00 00 00 00 00 00 00 00 00 
{262} normal block at 0x000001B2439E5410, 16 bytes long.
 Data: < \&#158;C&#178;           > 10 5C 9E 43 B2 01 00 00 00 00 00 00 00 00 00 00 
{260} normal block at 0x000001B2439E56E0, 16 bytes long.
 Data: < &#196;&#156;C&#178;           > 90 C4 9C 43 B2 01 00 00 00 00 00 00 00 00 00 00 
{259} normal block at 0x000001B2439CC490, 40 bytes long.
 Data: <&#224;V&#158;C&#178;   pn E&#178;   > E0 56 9E 43 B2 01 00 00 70 6E 81 45 B2 01 00 00 
{258} normal block at 0x000001B2439E5230, 16 bytes long.
 Data: <&#240;[&#158;C&#178;           > F0 5B 9E 43 B2 01 00 00 00 00 00 00 00 00 00 00 
{257} normal block at 0x000001B2439E4DD0, 16 bytes long.
 Data: <&#200;[&#158;C&#178;           > C8 5B 9E 43 B2 01 00 00 00 00 00 00 00 00 00 00 
{256} normal block at 0x000001B2439E0560, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{255} normal block at 0x000001B2439E4970, 16 bytes long.
 Data: <&#160;[&#158;C&#178;           > A0 5B 9E 43 B2 01 00 00 00 00 00 00 00 00 00 00 
{254} normal block at 0x000001B2439E5BA0, 992 bytes long.
 Data: <pI&#158;C&#178;   ` &#158;C&#178;   > 70 49 9E 43 B2 01 00 00 60 05 9E 43 B2 01 00 00 
{90} normal block at 0x000001B2439E11C0, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{89} normal block at 0x000001B2439DDDC0, 16 bytes long.
 Data: <&#224;&#217;&#156;C&#178;           > E0 D9 9C 43 B2 01 00 00 00 00 00 00 00 00 00 00 
{88} normal block at 0x000001B2439CD9E0, 40 bytes long.
 Data: <&#192;&#221; C&#178;   &#192; &#158;C&#178;   > C0 DD 9D 43 B2 01 00 00 C0 11 9E 43 B2 01 00 00 
{67} normal block at 0x000001B2439DD5F0, 16 bytes long.
 Data: < &#234;&#242;P&#246;           > 80 EA F2 50 F6 7F 00 00 00 00 00 00 00 00 00 00 
{66} normal block at 0x000001B2439DD780, 16 bytes long.
 Data: <@&#233;&#242;P&#246;           > 40 E9 F2 50 F6 7F 00 00 00 00 00 00 00 00 00 00 
{65} normal block at 0x000001B2439DD910, 16 bytes long.
 Data: <&#248;W&#239;P&#246;           > F8 57 EF 50 F6 7F 00 00 00 00 00 00 00 00 00 00 
{64} normal block at 0x000001B2439DD2D0, 16 bytes long.
 Data: <&#216;W&#239;P&#246;           > D8 57 EF 50 F6 7F 00 00 00 00 00 00 00 00 00 00 
{63} normal block at 0x000001B2439DDA00, 16 bytes long.
 Data: <P &#239;P&#246;           > 50 04 EF 50 F6 7F 00 00 00 00 00 00 00 00 00 00 
{62} normal block at 0x000001B2439DD230, 16 bytes long.
 Data: <0 &#239;P&#246;           > 30 04 EF 50 F6 7F 00 00 00 00 00 00 00 00 00 00 
{61} normal block at 0x000001B2439DD500, 16 bytes long.
 Data: <&#224; &#239;P&#246;           > E0 02 EF 50 F6 7F 00 00 00 00 00 00 00 00 00 00 
{60} normal block at 0x000001B2439DD640, 16 bytes long.
 Data: <  &#239;P&#246;           > 10 04 EF 50 F6 7F 00 00 00 00 00 00 00 00 00 00 
{59} normal block at 0x000001B2439DD1E0, 16 bytes long.
 Data: <p &#239;P&#246;           > 70 04 EF 50 F6 7F 00 00 00 00 00 00 00 00 00 00 
{58} normal block at 0x000001B2439DD960, 16 bytes long.
 Data: < &#192;&#237;P&#246;           > 18 C0 ED 50 F6 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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