Task 38627772

Name cdk8_A31_A17_r0_2-QUICO_ATM_GAFF2_NAGL_cdk8-0-6-RND8275_4
Workunit 31577416
Created 24 Apr 2026, 13:15:19 UTC
Sent 24 Apr 2026, 13:15:52 UTC
Report deadline 29 Apr 2026, 13:15:52 UTC
Received 25 Apr 2026, 1:46:10 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 613630
Run time 6 hours 15 min 18 sec
CPU time 5 hours 18 min 4 sec
Validate state Valid
Credit 750,000.00
Device peak FLOPS 53,036.10 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 978.39 MB
Peak swap size 7.65 GB
Peak disk usage 3.18 GB

Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
12:31:16 (26560): wrapper (7.9.26016): starting
12:31:16 (26560): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A31_A17_0.pdb
QB_A31_A17_0.xml
QB_A31_A17.inpcrd
QB_A31_A17_input.yaml
QB_A31_A17.pdb
QB_A31_A17.prmtop
QB_A31_A17_sys.xml
run.bat
run.sh
12:31:19 (26560): Library/usr/bin/tar.exe exited; CPU time 0.000000
12:31:19 (26560): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
18:45:38 (26560): C:/Windows/system32/cmd.exe exited; CPU time 19084.484375
18:45:38 (26560): called boinc_finish(0)
0 bytes in 0 Free Blocks.
566 bytes in 8 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 333388587 bytes.
Dumping objects ->
{3835649} normal block at 0x000001C04F008D00, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835638} normal block at 0x000001C04D2060A0, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835627} normal block at 0x000001C04D206030, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{3835616} normal block at 0x000001C04D206490, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835605} normal block at 0x000001C04D2062D0, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{3835574} normal block at 0x000001C04F01B700, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835563} normal block at 0x000001C04D2042E0, 155 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
..\api\boinc_api.cpp(309) : {3835560} normal block at 0x000001C04D1FDA40, 8 bytes long.
 Data: <  pM&#192;   > 00 00 70 4D C0 01 00 00 
{3834734} normal block at 0x000001C04D203CC0, 155 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
{3833963} normal block at 0x000001C04D1FE0D0, 8 bytes long.
 Data: <PL O&#192;   > 50 4C 07 4F C0 01 00 00 
..\zip\boinc_zip.cpp(122) : {313} normal block at 0x000001C04D1F1220, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{298} normal block at 0x000001C04D1F2050, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{297} normal block at 0x000001C04D2077B0, 16 bytes long.
 Data: < { M&#192;           > 98 7B 20 4D C0 01 00 00 00 00 00 00 00 00 00 00 
{296} normal block at 0x000001C04D207760, 16 bytes long.
 Data: <p{ M&#192;           > 70 7B 20 4D C0 01 00 00 00 00 00 00 00 00 00 00 
{295} normal block at 0x000001C04D1FFC80, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{294} normal block at 0x000001C04D2068B0, 16 bytes long.
 Data: <H{ M&#192;           > 48 7B 20 4D C0 01 00 00 00 00 00 00 00 00 00 00 
{293} normal block at 0x000001C04D206BD0, 16 bytes long.
 Data: < { M&#192;           > 20 7B 20 4D C0 01 00 00 00 00 00 00 00 00 00 00 
{292} normal block at 0x000001C04D207710, 16 bytes long.
 Data: <&#248;z M&#192;           > F8 7A 20 4D C0 01 00 00 00 00 00 00 00 00 00 00 
{291} normal block at 0x000001C04D207530, 16 bytes long.
 Data: <&#208;z M&#192;           > D0 7A 20 4D C0 01 00 00 00 00 00 00 00 00 00 00 
{290} normal block at 0x000001C04D206180, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{289} normal block at 0x000001C04D206F90, 16 bytes long.
 Data: < &#244; M&#192;           > 88 F4 1E 4D C0 01 00 00 00 00 00 00 00 00 00 00 
{288} normal block at 0x000001C04D1FF6E0, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{287} normal block at 0x000001C04D206F40, 16 bytes long.
 Data: <`&#244; M&#192;           > 60 F4 1E 4D C0 01 00 00 00 00 00 00 00 00 00 00 
{285} normal block at 0x000001C04D2074E0, 16 bytes long.
 Data: <8&#244; M&#192;           > 38 F4 1E 4D C0 01 00 00 00 00 00 00 00 00 00 00 
{284} normal block at 0x000001C04D207300, 16 bytes long.
 Data: < &#244; M&#192;           > 10 F4 1E 4D C0 01 00 00 00 00 00 00 00 00 00 00 
{283} normal block at 0x000001C04D207030, 16 bytes long.
 Data: <&#232;&#243; M&#192;           > E8 F3 1E 4D C0 01 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x000001C04D206B80, 16 bytes long.
 Data: <&#192;&#243; M&#192;           > C0 F3 1E 4D C0 01 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x000001C04D206DB0, 16 bytes long.
 Data: < &#243; M&#192;           > 98 F3 1E 4D C0 01 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x000001C04D1FFF80, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{279} normal block at 0x000001C04D206EF0, 16 bytes long.
 Data: <p&#243; M&#192;           > 70 F3 1E 4D C0 01 00 00 00 00 00 00 00 00 00 00 
{278} normal block at 0x000001C04D1EF370, 320 bytes long.
 Data: <&#240;n M&#192;    &#255; M&#192;   > F0 6E 20 4D C0 01 00 00 80 FF 1F 4D C0 01 00 00 
{277} normal block at 0x000001C04D207080, 16 bytes long.
 Data: <&#176;z M&#192;           > B0 7A 20 4D C0 01 00 00 00 00 00 00 00 00 00 00 
{276} normal block at 0x000001C04D2072B0, 16 bytes long.
 Data: < z M&#192;           > 88 7A 20 4D C0 01 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x000001C04D1FF920, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{274} normal block at 0x000001C04D206E50, 16 bytes long.
 Data: <`z M&#192;           > 60 7A 20 4D C0 01 00 00 00 00 00 00 00 00 00 00 
{273} normal block at 0x000001C04D1FFA40, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{272} normal block at 0x000001C04D207490, 16 bytes long.
 Data: <&#168;y M&#192;           > A8 79 20 4D C0 01 00 00 00 00 00 00 00 00 00 00 
{271} normal block at 0x000001C04D206C20, 16 bytes long.
 Data: < y M&#192;           > 80 79 20 4D C0 01 00 00 00 00 00 00 00 00 00 00 
{270} normal block at 0x000001C04D206B30, 16 bytes long.
 Data: <Xy M&#192;           > 58 79 20 4D C0 01 00 00 00 00 00 00 00 00 00 00 
{269} normal block at 0x000001C04D2076C0, 16 bytes long.
 Data: <0y M&#192;           > 30 79 20 4D C0 01 00 00 00 00 00 00 00 00 00 00 
{268} normal block at 0x000001C04D207580, 16 bytes long.
 Data: < y M&#192;           > 08 79 20 4D C0 01 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x000001C04D206D60, 16 bytes long.
 Data: <&#224;x M&#192;           > E0 78 20 4D C0 01 00 00 00 00 00 00 00 00 00 00 
{265} normal block at 0x000001C04D207620, 16 bytes long.
 Data: < d M&#192;           > 20 64 20 4D C0 01 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x000001C04D206420, 40 bytes long.
 Data: < v M&#192;    &#183; O&#192;   > 20 76 20 4D C0 01 00 00 00 B7 01 4F C0 01 00 00 
{263} normal block at 0x000001C04D206D10, 16 bytes long.
 Data: <&#192;x M&#192;           > C0 78 20 4D C0 01 00 00 00 00 00 00 00 00 00 00 
{262} normal block at 0x000001C04D207440, 16 bytes long.
 Data: < x M&#192;           > 98 78 20 4D C0 01 00 00 00 00 00 00 00 00 00 00 
{261} normal block at 0x000001C04D2002E0, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{260} normal block at 0x000001C04D2073F0, 16 bytes long.
 Data: <px M&#192;           > 70 78 20 4D C0 01 00 00 00 00 00 00 00 00 00 00 
{259} normal block at 0x000001C04D207870, 992 bytes long.
 Data: <&#240;s M&#192;   &#224;  M&#192;   > F0 73 20 4D C0 01 00 00 E0 02 20 4D C0 01 00 00 
{95} normal block at 0x000001C04D2003A0, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{94} normal block at 0x000001C04D1FD5E0, 16 bytes long.
 Data: <&#160;&#230; M&#192;           > A0 E6 1E 4D C0 01 00 00 00 00 00 00 00 00 00 00 
{93} normal block at 0x000001C04D1EE6A0, 40 bytes long.
 Data: <&#224;&#213; M&#192;   &#160;  M&#192;   > E0 D5 1F 4D C0 01 00 00 A0 03 20 4D C0 01 00 00 
{72} normal block at 0x000001C04D1FE1C0, 16 bytes long.
 Data: < &#234;{&#229;&#246;           > 80 EA 7B E5 F6 7F 00 00 00 00 00 00 00 00 00 00 
{71} normal block at 0x000001C04D1FDD10, 16 bytes long.
 Data: <@&#233;{&#229;&#246;           > 40 E9 7B E5 F6 7F 00 00 00 00 00 00 00 00 00 00 
{70} normal block at 0x000001C04D1FE080, 16 bytes long.
 Data: <&#248;Wx&#229;&#246;           > F8 57 78 E5 F6 7F 00 00 00 00 00 00 00 00 00 00 
{69} normal block at 0x000001C04D1FD680, 16 bytes long.
 Data: <&#216;Wx&#229;&#246;           > D8 57 78 E5 F6 7F 00 00 00 00 00 00 00 00 00 00 
{68} normal block at 0x000001C04D1FD590, 16 bytes long.
 Data: <P x&#229;&#246;           > 50 04 78 E5 F6 7F 00 00 00 00 00 00 00 00 00 00 
{67} normal block at 0x000001C04D1FDF90, 16 bytes long.
 Data: <0 x&#229;&#246;           > 30 04 78 E5 F6 7F 00 00 00 00 00 00 00 00 00 00 
{66} normal block at 0x000001C04D1FDF40, 16 bytes long.
 Data: <&#224; x&#229;&#246;           > E0 02 78 E5 F6 7F 00 00 00 00 00 00 00 00 00 00 
{65} normal block at 0x000001C04D1FDEF0, 16 bytes long.
 Data: <  x&#229;&#246;           > 10 04 78 E5 F6 7F 00 00 00 00 00 00 00 00 00 00 
{64} normal block at 0x000001C04D1FD7C0, 16 bytes long.
 Data: <p x&#229;&#246;           > 70 04 78 E5 F6 7F 00 00 00 00 00 00 00 00 00 00 
{63} normal block at 0x000001C04D1FD9F0, 16 bytes long.
 Data: < &#192;v&#229;&#246;           > 18 C0 76 E5 F6 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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