Task 38627630

Name cdk8_A25_A18_r0_3-QUICO_ATM_GAFF2_NAGL_cdk8-0-6-RND1866_3
Workunit 31577385
Created 24 Apr 2026, 12:37:00 UTC
Sent 24 Apr 2026, 12:38:01 UTC
Report deadline 29 Apr 2026, 12:38:01 UTC
Received 24 Apr 2026, 23:09:14 UTC
Server state Over
Outcome Computation error
Client state Compute error
Exit status 195 (0x000000C3) EXIT_CHILD_FAILED
Computer ID 619891
Run time 1 min 47 sec
CPU time 24 sec
Validate state Invalid
Credit 0.00
Device peak FLOPS 16,318.67 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 383.93 MB
Peak swap size 10.72 GB
Peak disk usage 1.42 GB

Stderr output

<core_client_version>8.2.9</core_client_version>
<![CDATA[
<message>
The operating system cannot run (null).
 (0xc3) - exit code 195 (0xc3)</message>
<stderr_txt>
17:05:56 (38672): wrapper (7.9.26016): starting
17:05:56 (38672): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A25_A18.inpcrd
QB_A25_A18_input.yaml
QB_A25_A18.pdb
QB_A25_A18.prmtop
QB_A25_A18_sys.xml
run.bat
run.sh
17:05:57 (38672): Library/usr/bin/tar.exe exited; CPU time 0.000000
17:05:57 (38672): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\25\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\25\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
Traceback (most recent call last):
  File "<frozen runpy>", line 198, in _run_module_as_main
  File "<frozen runpy>", line 88, in _run_code
  File "C:\ProgramData\BOINC\slots\25\Scripts\rbfe_production.exe\__main__.py", line 7, in <module>
  File "C:\ProgramData\BOINC\slots\25\Lib\site-packages\atom_openmm\rbfe_production.py", line 29, in rbfe_production
    rx = openmm_job_RBFE(
         ^^^^^^^^^^^^^^^^
  File "C:\ProgramData\BOINC\slots\25\Lib\site-packages\atom_openmm\openmm_async_re.py", line 427, in __init__
    self.service_worker = ommworkercls(self.basename, service_ommsys, self.keywords, compute = False, logger = self.logger)
                          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\ProgramData\BOINC\slots\25\Lib\site-packages\atom_openmm\ommworker.py", line 53, in __init__
    self.start_worker()
  File "C:\ProgramData\BOINC\slots\25\Lib\site-packages\atom_openmm\ommworker.py", line 444, in start_worker
    self._openmm_worker_makecontext()
  File "C:\ProgramData\BOINC\slots\25\Lib\site-packages\atom_openmm\ommworker.py", line 265, in _openmm_worker_makecontext
    self.simulation.loadState(self.basename + "_0.xml")
  File "C:\ProgramData\BOINC\slots\25\Lib\site-packages\openmm\app\simulation.py", line 359, in loadState
    with open(file, 'r') as f:
         ^^^^^^^^^^^^^^^
FileNotFoundError: [Errno 2] No such file or directory: 'QB_A25_A18_0.xml'
17:07:25 (38672): C:/Windows/system32/cmd.exe exited; CPU time 24.203125
17:07:25 (38672): app exit status: 0x16
17:07:25 (38672): called boinc_finish(195)
0 bytes in 0 Free Blocks.
256 bytes in 6 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 1831681 bytes.
Dumping objects ->
{3835292} normal block at 0x0000022CBA6607F0, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835281} normal block at 0x0000022CBA660780, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835270} normal block at 0x0000022CBA6605C0, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{3835259} normal block at 0x0000022CB7F75660, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835248} normal block at 0x0000022CB7F75430, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{3835217} normal block at 0x0000022CBA530AD0, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
..\api\boinc_api.cpp(309) : {3835204} normal block at 0x0000022CB7F6A650, 8 bytes long.
 Data: <  &&#184;,   > 00 00 26 B8 2C 02 00 00 
{3833997} normal block at 0x0000022CB7F6A5B0, 8 bytes long.
 Data: < &#241;e&#186;,   > 00 F1 65 BA 2C 02 00 00 
..\zip\boinc_zip.cpp(122) : {330} normal block at 0x0000022CB7F62640, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{315} normal block at 0x0000022CB7F6BCB0, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{314} normal block at 0x0000022CB7F78B50, 16 bytes long.
 Data: <x&#149;&#247;&#183;,           > 78 95 F7 B7 2C 02 00 00 00 00 00 00 00 00 00 00 
{313} normal block at 0x0000022CB7F780B0, 16 bytes long.
 Data: <P&#149;&#247;&#183;,           > 50 95 F7 B7 2C 02 00 00 00 00 00 00 00 00 00 00 
{312} normal block at 0x0000022CB7F76330, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{311} normal block at 0x0000022CB7F78060, 16 bytes long.
 Data: <(&#149;&#247;&#183;,           > 28 95 F7 B7 2C 02 00 00 00 00 00 00 00 00 00 00 
{310} normal block at 0x0000022CB7F782E0, 16 bytes long.
 Data: < &#149;&#247;&#183;,           > 00 95 F7 B7 2C 02 00 00 00 00 00 00 00 00 00 00 
{309} normal block at 0x0000022CB7F78B00, 16 bytes long.
 Data: <&#216;&#148;&#247;&#183;,           > D8 94 F7 B7 2C 02 00 00 00 00 00 00 00 00 00 00 
{308} normal block at 0x0000022CB7F78AB0, 16 bytes long.
 Data: <&#176;&#148;&#247;&#183;,           > B0 94 F7 B7 2C 02 00 00 00 00 00 00 00 00 00 00 
{307} normal block at 0x0000022CB7F75A50, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{306} normal block at 0x0000022CB7F78560, 16 bytes long.
 Data: <8 &#246;&#183;,           > 38 11 F6 B7 2C 02 00 00 00 00 00 00 00 00 00 00 
{305} normal block at 0x0000022CB7F75D30, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{304} normal block at 0x0000022CB7F78920, 16 bytes long.
 Data: <  &#246;&#183;,           > 10 11 F6 B7 2C 02 00 00 00 00 00 00 00 00 00 00 
{302} normal block at 0x0000022CB7F78240, 16 bytes long.
 Data: <&#232; &#246;&#183;,           > E8 10 F6 B7 2C 02 00 00 00 00 00 00 00 00 00 00 
{301} normal block at 0x0000022CB7F781F0, 16 bytes long.
 Data: <&#192; &#246;&#183;,           > C0 10 F6 B7 2C 02 00 00 00 00 00 00 00 00 00 00 
{300} normal block at 0x0000022CB7F78C90, 16 bytes long.
 Data: <  &#246;&#183;,           > 98 10 F6 B7 2C 02 00 00 00 00 00 00 00 00 00 00 
{299} normal block at 0x0000022CB7F789C0, 16 bytes long.
 Data: <p &#246;&#183;,           > 70 10 F6 B7 2C 02 00 00 00 00 00 00 00 00 00 00 
{298} normal block at 0x0000022CB7F78D80, 16 bytes long.
 Data: <H &#246;&#183;,           > 48 10 F6 B7 2C 02 00 00 00 00 00 00 00 00 00 00 
{297} normal block at 0x0000022CB7F76630, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{296} normal block at 0x0000022CB7F78D30, 16 bytes long.
 Data: <  &#246;&#183;,           > 20 10 F6 B7 2C 02 00 00 00 00 00 00 00 00 00 00 
{295} normal block at 0x0000022CB7F61020, 320 bytes long.
 Data: <0 &#247;&#183;,   0f&#247;&#183;,   > 30 8D F7 B7 2C 02 00 00 30 66 F7 B7 2C 02 00 00 
{294} normal block at 0x0000022CB7F78290, 16 bytes long.
 Data: < &#148;&#247;&#183;,           > 90 94 F7 B7 2C 02 00 00 00 00 00 00 00 00 00 00 
{293} normal block at 0x0000022CB7F781A0, 16 bytes long.
 Data: <h&#148;&#247;&#183;,           > 68 94 F7 B7 2C 02 00 00 00 00 00 00 00 00 00 00 
{292} normal block at 0x0000022CB7F75DF0, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{291} normal block at 0x0000022CB7F786A0, 16 bytes long.
 Data: <@&#148;&#247;&#183;,           > 40 94 F7 B7 2C 02 00 00 00 00 00 00 00 00 00 00 
{290} normal block at 0x0000022CB7F76690, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{289} normal block at 0x0000022CB7F78150, 16 bytes long.
 Data: < &#147;&#247;&#183;,           > 88 93 F7 B7 2C 02 00 00 00 00 00 00 00 00 00 00 
{288} normal block at 0x0000022CB7F78BF0, 16 bytes long.
 Data: <`&#147;&#247;&#183;,           > 60 93 F7 B7 2C 02 00 00 00 00 00 00 00 00 00 00 
{287} normal block at 0x0000022CB7F78FB0, 16 bytes long.
 Data: <8&#147;&#247;&#183;,           > 38 93 F7 B7 2C 02 00 00 00 00 00 00 00 00 00 00 
{286} normal block at 0x0000022CB7F788D0, 16 bytes long.
 Data: < &#147;&#247;&#183;,           > 10 93 F7 B7 2C 02 00 00 00 00 00 00 00 00 00 00 
{285} normal block at 0x0000022CB7F78F60, 16 bytes long.
 Data: <&#232;&#146;&#247;&#183;,           > E8 92 F7 B7 2C 02 00 00 00 00 00 00 00 00 00 00 
{284} normal block at 0x0000022CB7F78F10, 16 bytes long.
 Data: <&#192;&#146;&#247;&#183;,           > C0 92 F7 B7 2C 02 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x0000022CB7F78830, 16 bytes long.
 Data: <&#224;Y&#247;&#183;,           > E0 59 F7 B7 2C 02 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x0000022CB7F759E0, 40 bytes long.
 Data: <0 &#247;&#183;,   &#208; S&#186;,   > 30 88 F7 B7 2C 02 00 00 D0 0A 53 BA 2C 02 00 00 
{280} normal block at 0x0000022CB7F78510, 16 bytes long.
 Data: <&#160;&#146;&#247;&#183;,           > A0 92 F7 B7 2C 02 00 00 00 00 00 00 00 00 00 00 
{279} normal block at 0x0000022CB7F78470, 16 bytes long.
 Data: <x&#146;&#247;&#183;,           > 78 92 F7 B7 2C 02 00 00 00 00 00 00 00 00 00 00 
{278} normal block at 0x0000022CB7F75F10, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{277} normal block at 0x0000022CB7F78970, 16 bytes long.
 Data: <P&#146;&#247;&#183;,           > 50 92 F7 B7 2C 02 00 00 00 00 00 00 00 00 00 00 
{276} normal block at 0x0000022CB7F79250, 992 bytes long.
 Data: <p&#137;&#247;&#183;,    _&#247;&#183;,   > 70 89 F7 B7 2C 02 00 00 10 5F F7 B7 2C 02 00 00 
{112} normal block at 0x0000022CB7F765D0, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{111} normal block at 0x0000022CB7F6A470, 16 bytes long.
 Data: <&#160;T&#247;&#183;,           > A0 54 F7 B7 2C 02 00 00 00 00 00 00 00 00 00 00 
{110} normal block at 0x0000022CB7F754A0, 40 bytes long.
 Data: <p&#164;&#246;&#183;,   &#208;e&#247;&#183;,   > 70 A4 F6 B7 2C 02 00 00 D0 65 F7 B7 2C 02 00 00 
{89} normal block at 0x0000022CB7F6A6F0, 16 bytes long.
 Data: < &#234;&#131;&#174;&#246;           > 80 EA 83 AE F6 7F 00 00 00 00 00 00 00 00 00 00 
{88} normal block at 0x0000022CB7F6A1A0, 16 bytes long.
 Data: <@&#233;&#131;&#174;&#246;           > 40 E9 83 AE F6 7F 00 00 00 00 00 00 00 00 00 00 
{87} normal block at 0x0000022CB7F6A0B0, 16 bytes long.
 Data: <&#248;W &#174;&#246;           > F8 57 80 AE F6 7F 00 00 00 00 00 00 00 00 00 00 
{86} normal block at 0x0000022CB7F69F20, 16 bytes long.
 Data: <&#216;W &#174;&#246;           > D8 57 80 AE F6 7F 00 00 00 00 00 00 00 00 00 00 
{85} normal block at 0x0000022CB7F69A70, 16 bytes long.
 Data: <P  &#174;&#246;           > 50 04 80 AE F6 7F 00 00 00 00 00 00 00 00 00 00 
{84} normal block at 0x0000022CB7F6A150, 16 bytes long.
 Data: <0  &#174;&#246;           > 30 04 80 AE F6 7F 00 00 00 00 00 00 00 00 00 00 
{83} normal block at 0x0000022CB7F6A600, 16 bytes long.
 Data: <&#224;  &#174;&#246;           > E0 02 80 AE F6 7F 00 00 00 00 00 00 00 00 00 00 
{82} normal block at 0x0000022CB7F69D90, 16 bytes long.
 Data: <   &#174;&#246;           > 10 04 80 AE F6 7F 00 00 00 00 00 00 00 00 00 00 
{81} normal block at 0x0000022CB7F69A20, 16 bytes long.
 Data: <p  &#174;&#246;           > 70 04 80 AE F6 7F 00 00 00 00 00 00 00 00 00 00 
{80} normal block at 0x0000022CB7F69E80, 16 bytes long.
 Data: < &#192;~&#174;&#246;           > 18 C0 7E AE F6 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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