Task 38627270

Stderr output

<core_client_version>8.2.9</core_client_version>
<![CDATA[
<message>
The operating system cannot run (null).
 (0xc3) - exit code 195 (0xc3)</message>
<stderr_txt>
04:18:23 (15748): wrapper (7.9.26016): starting
04:18:23 (15748): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A14_A15_0.pdb
QB_A14_A15_0.xml
QB_A14_A15.inpcrd
QB_A14_A15_input.yaml
QB_A14_A15.pdb
QB_A14_A15.prmtop
QB_A14_A15_sys.xml
run.bat
run.sh
04:18:25 (15748): Library/usr/bin/tar.exe exited; CPU time 0.000000
04:18:25 (15748): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\5\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\5\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
Detected memory leaks!
Dumping objects ->
..\api\boinc_api.cpp(309) : {3835171} normal block at 0x000001DEB495D500, 8 bytes long.
 Data: <        > 00 00 E1 B4 DE 01 00 00 
..\lib\diagnostics_win.cpp(417) : {3833956} normal block at 0x000001DEB494D9A0, 1080 bytes long.
 Data: < n              > 20 6E 00 00 CD CD CD CD E0 01 00 00 00 00 00 00 
..\zip\boinc_zip.cpp(122) : {310} normal block at 0x000001DEB4951150, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
Object dump complete.
05:04:39 (26332): wrapper (7.9.26016): starting
05:04:39 (26332): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
A subdirectory or file C:\ProgramData\BOINC\slots\5\tmp already exists.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
Traceback (most recent call last):
  File "<frozen runpy>", line 198, in _run_module_as_main
  File "<frozen runpy>", line 88, in _run_code
  File "C:\ProgramData\BOINC\slots\5\Scripts\rbfe_production.exe\__main__.py", line 7, in <module>
  File "C:\ProgramData\BOINC\slots\5\Lib\site-packages\atom_openmm\rbfe_production.py", line 29, in rbfe_production
    rx = openmm_job_RBFE(
         ^^^^^^^^^^^^^^^^
  File "C:\ProgramData\BOINC\slots\5\Lib\site-packages\atom_openmm\openmm_async_re.py", line 427, in __init__
    self.service_worker = ommworkercls(self.basename, service_ommsys, self.keywords, compute = False, logger = self.logger)
                          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\ProgramData\BOINC\slots\5\Lib\site-packages\atom_openmm\ommworker.py", line 53, in __init__
    self.start_worker()
  File "C:\ProgramData\BOINC\slots\5\Lib\site-packages\atom_openmm\ommworker.py", line 444, in start_worker
    self._openmm_worker_makecontext()
  File "C:\ProgramData\BOINC\slots\5\Lib\site-packages\atom_openmm\ommworker.py", line 265, in _openmm_worker_makecontext
    self.simulation.loadState(self.basename + "_0.xml")
  File "C:\ProgramData\BOINC\slots\5\Lib\site-packages\openmm\app\simulation.py", line 363, in loadState
    self.context.setState(mm.XmlSerializer.deserialize(xml))
                          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\ProgramData\BOINC\slots\5\Lib\site-packages\openmm\openmm.py", line 19627, in deserialize
    return XmlSerializer._deserializeState(inputString)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\ProgramData\BOINC\slots\5\Lib\site-packages\openmm\openmm.py", line 19590, in _deserializeState
    return _openmm.XmlSerializer__deserializeState(inputString)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
openmm.OpenMMException: bad allocation
05:05:02 (26332): C:/Windows/system32/cmd.exe exited; CPU time 19.390625
05:05:02 (26332): app exit status: 0x16
05:05:02 (26332): called boinc_finish(195)
0 bytes in 0 Free Blocks.
256 bytes in 6 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 527454 bytes.
Dumping objects ->
{1606} normal block at 0x00000224B4745670, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{1595} normal block at 0x00000224B4745600, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{1584} normal block at 0x00000224B4744F70, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{1573} normal block at 0x00000224B47450C0, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{1562} normal block at 0x00000224B4745360, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{1531} normal block at 0x00000224B4730100, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
..\api\boinc_api.cpp(309) : {1518} normal block at 0x00000224B47462B0, 8 bytes long.
 Data: <    $   > 00 00 A6 B4 24 02 00 00 
{304} normal block at 0x00000224B4745C70, 8 bytes long.
 Data: <`ot $   > 60 6F 74 B4 24 02 00 00 
{295} normal block at 0x00000224B4732300, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{294} normal block at 0x00000224B4746260, 16 bytes long.
 Data: <hnt $           > 68 6E 74 B4 24 02 00 00 00 00 00 00 00 00 00 00 
{293} normal block at 0x00000224B4746760, 16 bytes long.
 Data: <@nt $           > 40 6E 74 B4 24 02 00 00 00 00 00 00 00 00 00 00 
{292} normal block at 0x00000224B473FD60, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{291} normal block at 0x00000224B4746530, 16 bytes long.
 Data: < nt $           > 18 6E 74 B4 24 02 00 00 00 00 00 00 00 00 00 00 
{290} normal block at 0x00000224B47460D0, 16 bytes long.
 Data: < mt $           > F0 6D 74 B4 24 02 00 00 00 00 00 00 00 00 00 00 
{289} normal block at 0x00000224B47467B0, 16 bytes long.
 Data: < mt $           > C8 6D 74 B4 24 02 00 00 00 00 00 00 00 00 00 00 
{288} normal block at 0x00000224B4746940, 16 bytes long.
 Data: < mt $           > A0 6D 74 B4 24 02 00 00 00 00 00 00 00 00 00 00 
{287} normal block at 0x00000224B4745210, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{286} normal block at 0x00000224B4746210, 16 bytes long.
 Data: <  r $           > F8 F4 72 B4 24 02 00 00 00 00 00 00 00 00 00 00 
{285} normal block at 0x00000224B473FD00, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{284} normal block at 0x00000224B4746AD0, 16 bytes long.
 Data: <  r $           > D0 F4 72 B4 24 02 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x00000224B4745EF0, 16 bytes long.
 Data: <  r $           > A8 F4 72 B4 24 02 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x00000224B4746080, 16 bytes long.
 Data: <  r $           > 80 F4 72 B4 24 02 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x00000224B47461C0, 16 bytes long.
 Data: <X r $           > 58 F4 72 B4 24 02 00 00 00 00 00 00 00 00 00 00 
{279} normal block at 0x00000224B4745C20, 16 bytes long.
 Data: <0 r $           > 30 F4 72 B4 24 02 00 00 00 00 00 00 00 00 00 00 
{278} normal block at 0x00000224B4745E50, 16 bytes long.
 Data: <  r $           > 08 F4 72 B4 24 02 00 00 00 00 00 00 00 00 00 00 
{277} normal block at 0x00000224B473FAC0, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{276} normal block at 0x00000224B4746030, 16 bytes long.
 Data: <  r $           > E0 F3 72 B4 24 02 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x00000224B472F3E0, 320 bytes long.
 Data: <0`t $     s $   > 30 60 74 B4 24 02 00 00 C0 FA 73 B4 24 02 00 00 
{274} normal block at 0x00000224B4745F40, 16 bytes long.
 Data: < mt $           > 80 6D 74 B4 24 02 00 00 00 00 00 00 00 00 00 00 
{273} normal block at 0x00000224B4746850, 16 bytes long.
 Data: <Xmt $           > 58 6D 74 B4 24 02 00 00 00 00 00 00 00 00 00 00 
{272} normal block at 0x00000224B473FA60, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{271} normal block at 0x00000224B4746120, 16 bytes long.
 Data: <0mt $           > 30 6D 74 B4 24 02 00 00 00 00 00 00 00 00 00 00 
{270} normal block at 0x00000224B473F9A0, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{269} normal block at 0x00000224B4745D10, 16 bytes long.
 Data: <xlt $           > 78 6C 74 B4 24 02 00 00 00 00 00 00 00 00 00 00 
{268} normal block at 0x00000224B47463F0, 16 bytes long.
 Data: <Plt $           > 50 6C 74 B4 24 02 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x00000224B4746A80, 16 bytes long.
 Data: <(lt $           > 28 6C 74 B4 24 02 00 00 00 00 00 00 00 00 00 00 
{266} normal block at 0x00000224B4745CC0, 16 bytes long.
 Data: < lt $           > 00 6C 74 B4 24 02 00 00 00 00 00 00 00 00 00 00 
{265} normal block at 0x00000224B4745BD0, 16 bytes long.
 Data: < kt $           > D8 6B 74 B4 24 02 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x00000224B47469E0, 16 bytes long.
 Data: < kt $           > B0 6B 74 B4 24 02 00 00 00 00 00 00 00 00 00 00 
{262} normal block at 0x00000224B4745FE0, 16 bytes long.
 Data: <PPt $           > 50 50 74 B4 24 02 00 00 00 00 00 00 00 00 00 00 
{261} normal block at 0x00000224B4745050, 40 bytes long.
 Data: < _t $     s $   > E0 5F 74 B4 24 02 00 00 00 01 73 B4 24 02 00 00 
{260} normal block at 0x00000224B4746A30, 16 bytes long.
 Data: < kt $           > 90 6B 74 B4 24 02 00 00 00 00 00 00 00 00 00 00 
{259} normal block at 0x00000224B4745B80, 16 bytes long.
 Data: <hkt $           > 68 6B 74 B4 24 02 00 00 00 00 00 00 00 00 00 00 
{258} normal block at 0x00000224B4740300, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{257} normal block at 0x00000224B4745F90, 16 bytes long.
 Data: <@kt $           > 40 6B 74 B4 24 02 00 00 00 00 00 00 00 00 00 00 
{256} normal block at 0x00000224B4746B40, 992 bytes long.
 Data: < _t $     t $   > 90 5F 74 B4 24 02 00 00 00 03 74 B4 24 02 00 00 
{92} normal block at 0x00000224B473FB80, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{91} normal block at 0x00000224B473E270, 16 bytes long.
 Data: <  t $           > 00 10 74 B4 24 02 00 00 00 00 00 00 00 00 00 00 
{90} normal block at 0x00000224B4741000, 40 bytes long.
 Data: <p s $     s $   > 70 E2 73 B4 24 02 00 00 80 FB 73 B4 24 02 00 00 
{69} normal block at 0x00000224B473DA00, 16 bytes long.
 Data: <   O            > 80 EA 1D 4F F6 7F 00 00 00 00 00 00 00 00 00 00 
{68} normal block at 0x00000224B473D870, 16 bytes long.
 Data: <@  O            > 40 E9 1D 4F F6 7F 00 00 00 00 00 00 00 00 00 00 
{67} normal block at 0x00000224B473DFA0, 16 bytes long.
 Data: < W O            > F8 57 1A 4F F6 7F 00 00 00 00 00 00 00 00 00 00 
{66} normal block at 0x00000224B473E220, 16 bytes long.
 Data: < W O            > D8 57 1A 4F F6 7F 00 00 00 00 00 00 00 00 00 00 
{65} normal block at 0x00000224B473E130, 16 bytes long.
 Data: <P  O            > 50 04 1A 4F F6 7F 00 00 00 00 00 00 00 00 00 00 
{64} normal block at 0x00000224B473DF50, 16 bytes long.
 Data: <0  O            > 30 04 1A 4F F6 7F 00 00 00 00 00 00 00 00 00 00 
{63} normal block at 0x00000224B473DDC0, 16 bytes long.
 Data: <   O            > E0 02 1A 4F F6 7F 00 00 00 00 00 00 00 00 00 00 
{62} normal block at 0x00000224B473E360, 16 bytes long.
 Data: <   O            > 10 04 1A 4F F6 7F 00 00 00 00 00 00 00 00 00 00 
{61} normal block at 0x00000224B473DEB0, 16 bytes long.
 Data: <p  O            > 70 04 1A 4F F6 7F 00 00 00 00 00 00 00 00 00 00 
{60} normal block at 0x00000224B473D780, 16 bytes long.
 Data: <   O            > 18 C0 18 4F F6 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>

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