Task 38626076

Name MCL1_RE_A04_A35_r0_5-QUICO_ATM_GAFF2_NAGL_MCL1_RE-0-6-RND1806_0
Workunit 31576184
Created 24 Apr 2026, 8:55:12 UTC
Sent 24 Apr 2026, 8:55:20 UTC
Report deadline 29 Apr 2026, 8:55:20 UTC
Received 24 Apr 2026, 10:50:05 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 622645
Run time 1 hours 54 min 45 sec
CPU time 1 hours 55 min 13 sec
Validate state Valid
Credit 750,000.00
Device peak FLOPS 46,098.30 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 492.08 MB
Peak swap size 6.62 GB
Peak disk usage 2.88 GB

Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
10:56:16 (12852): wrapper (7.9.26016): starting
10:56:16 (12852): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A04_A35_0.pdb
QB_A04_A35_0.xml
QB_A04_A35.inpcrd
QB_A04_A35_input.yaml
QB_A04_A35.pdb
QB_A04_A35.prmtop
QB_A04_A35_sys.xml
run.bat
run.sh
10:56:17 (12852): Library/usr/bin/tar.exe exited; CPU time 0.000000
10:56:17 (12852): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\1\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\1\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
12:49:23 (12852): C:/Windows/system32/cmd.exe exited; CPU time 6913.218750
12:49:23 (12852): called boinc_finish(0)
0 bytes in 0 Free Blocks.
460 bytes in 8 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 122440321 bytes.
Dumping objects ->
{3835275} normal block at 0x000002610E199AF0, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835264} normal block at 0x000002610E199C40, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835253} normal block at 0x000002610E175310, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{3835242} normal block at 0x000002610E175150, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835231} normal block at 0x000002610E1754D0, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{3835200} normal block at 0x000002610FD95150, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835189} normal block at 0x000002610FDAED40, 102 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
..\api\boinc_api.cpp(309) : {3835186} normal block at 0x000002610E16D510, 8 bytes long.
 Data: <  O a   > 00 00 4F 0E 61 02 00 00 
{3834568} normal block at 0x000002610FDAEBE0, 102 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
{3833959} normal block at 0x000002610E16D4C0, 8 bytes long.
 Data: < &#217;  a   > 10 D9 15 0E 61 02 00 00 
..\zip\boinc_zip.cpp(122) : {311} normal block at 0x000002610E161200, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{296} normal block at 0x000002610E1620C0, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{295} normal block at 0x000002610E175FE0, 16 bytes long.
 Data: < n  a           > 18 6E 17 0E 61 02 00 00 00 00 00 00 00 00 00 00 
{294} normal block at 0x000002610E176260, 16 bytes long.
 Data: <&#240;m  a           > F0 6D 17 0E 61 02 00 00 00 00 00 00 00 00 00 00 
{293} normal block at 0x000002610E1710D0, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{292} normal block at 0x000002610E176760, 16 bytes long.
 Data: <&#200;m  a           > C8 6D 17 0E 61 02 00 00 00 00 00 00 00 00 00 00 
{291} normal block at 0x000002610E175F40, 16 bytes long.
 Data: <&#160;m  a           > A0 6D 17 0E 61 02 00 00 00 00 00 00 00 00 00 00 
{290} normal block at 0x000002610E175EA0, 16 bytes long.
 Data: <xm  a           > 78 6D 17 0E 61 02 00 00 00 00 00 00 00 00 00 00 
{289} normal block at 0x000002610E175F90, 16 bytes long.
 Data: <Pm  a           > 50 6D 17 0E 61 02 00 00 00 00 00 00 00 00 00 00 
{288} normal block at 0x000002610E1751C0, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{287} normal block at 0x000002610E175E50, 16 bytes long.
 Data: <    a           > 88 0E 17 0E 61 02 00 00 00 00 00 00 00 00 00 00 
{286} normal block at 0x000002610E171D30, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{285} normal block at 0x000002610E1766C0, 16 bytes long.
 Data: <`   a           > 60 0E 17 0E 61 02 00 00 00 00 00 00 00 00 00 00 
{283} normal block at 0x000002610E1768A0, 16 bytes long.
 Data: <8   a           > 38 0E 17 0E 61 02 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x000002610E176490, 16 bytes long.
 Data: <    a           > 10 0E 17 0E 61 02 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x000002610E176300, 16 bytes long.
 Data: <&#232;   a           > E8 0D 17 0E 61 02 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x000002610E175B80, 16 bytes long.
 Data: <&#192;   a           > C0 0D 17 0E 61 02 00 00 00 00 00 00 00 00 00 00 
{279} normal block at 0x000002610E1768F0, 16 bytes long.
 Data: <    a           > 98 0D 17 0E 61 02 00 00 00 00 00 00 00 00 00 00 
{278} normal block at 0x000002610E171550, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{277} normal block at 0x000002610E176850, 16 bytes long.
 Data: <p   a           > 70 0D 17 0E 61 02 00 00 00 00 00 00 00 00 00 00 
{276} normal block at 0x000002610E170D70, 320 bytes long.
 Data: <Ph  a   P   a   > 50 68 17 0E 61 02 00 00 50 15 17 0E 61 02 00 00 
{275} normal block at 0x000002610E176670, 16 bytes long.
 Data: <0m  a           > 30 6D 17 0E 61 02 00 00 00 00 00 00 00 00 00 00 
{274} normal block at 0x000002610E176A30, 16 bytes long.
 Data: < m  a           > 08 6D 17 0E 61 02 00 00 00 00 00 00 00 00 00 00 
{273} normal block at 0x000002610E171670, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{272} normal block at 0x000002610E176080, 16 bytes long.
 Data: <&#224;l  a           > E0 6C 17 0E 61 02 00 00 00 00 00 00 00 00 00 00 
{271} normal block at 0x000002610E171070, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{270} normal block at 0x000002610E1763A0, 16 bytes long.
 Data: <(l  a           > 28 6C 17 0E 61 02 00 00 00 00 00 00 00 00 00 00 
{269} normal block at 0x000002610E176030, 16 bytes long.
 Data: < l  a           > 00 6C 17 0E 61 02 00 00 00 00 00 00 00 00 00 00 
{268} normal block at 0x000002610E176350, 16 bytes long.
 Data: <&#216;k  a           > D8 6B 17 0E 61 02 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x000002610E175CC0, 16 bytes long.
 Data: <&#176;k  a           > B0 6B 17 0E 61 02 00 00 00 00 00 00 00 00 00 00 
{266} normal block at 0x000002610E175E00, 16 bytes long.
 Data: < k  a           > 88 6B 17 0E 61 02 00 00 00 00 00 00 00 00 00 00 
{265} normal block at 0x000002610E176990, 16 bytes long.
 Data: <`k  a           > 60 6B 17 0E 61 02 00 00 00 00 00 00 00 00 00 00 
{263} normal block at 0x000002610E176800, 16 bytes long.
 Data: <&#176;U  a           > B0 55 17 0E 61 02 00 00 00 00 00 00 00 00 00 00 
{262} normal block at 0x000002610E1755B0, 40 bytes long.
 Data: < h  a   PQ&#217; a   > 00 68 17 0E 61 02 00 00 50 51 D9 0F 61 02 00 00 
{261} normal block at 0x000002610E175D10, 16 bytes long.
 Data: <@k  a           > 40 6B 17 0E 61 02 00 00 00 00 00 00 00 00 00 00 
{260} normal block at 0x000002610E176710, 16 bytes long.
 Data: < k  a           > 18 6B 17 0E 61 02 00 00 00 00 00 00 00 00 00 00 
{259} normal block at 0x000002610E170FB0, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{258} normal block at 0x000002610E176120, 16 bytes long.
 Data: <&#240;j  a           > F0 6A 17 0E 61 02 00 00 00 00 00 00 00 00 00 00 
{257} normal block at 0x000002610E176AF0, 992 bytes long.
 Data: < a  a   &#176;   a   > 20 61 17 0E 61 02 00 00 B0 0F 17 0E 61 02 00 00 
{93} normal block at 0x000002610E1718B0, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{92} normal block at 0x000002610E16DBA0, 16 bytes long.
 Data: < &#200;  a           > 80 C8 15 0E 61 02 00 00 00 00 00 00 00 00 00 00 
{91} normal block at 0x000002610E15C880, 40 bytes long.
 Data: <&#160;&#219;  a   &#176;   a   > A0 DB 16 0E 61 02 00 00 B0 18 17 0E 61 02 00 00 
{70} normal block at 0x000002610E16DFB0, 16 bytes long.
 Data: < &#234;w&#145;&#247;           > 80 EA 77 91 F7 7F 00 00 00 00 00 00 00 00 00 00 
{69} normal block at 0x000002610E16D7E0, 16 bytes long.
 Data: <@&#233;w&#145;&#247;           > 40 E9 77 91 F7 7F 00 00 00 00 00 00 00 00 00 00 
{68} normal block at 0x000002610E16D740, 16 bytes long.
 Data: <&#248;Wt&#145;&#247;           > F8 57 74 91 F7 7F 00 00 00 00 00 00 00 00 00 00 
{67} normal block at 0x000002610E16D880, 16 bytes long.
 Data: <&#216;Wt&#145;&#247;           > D8 57 74 91 F7 7F 00 00 00 00 00 00 00 00 00 00 
{66} normal block at 0x000002610E16D9C0, 16 bytes long.
 Data: <P t&#145;&#247;           > 50 04 74 91 F7 7F 00 00 00 00 00 00 00 00 00 00 
{65} normal block at 0x000002610E16D6F0, 16 bytes long.
 Data: <0 t&#145;&#247;           > 30 04 74 91 F7 7F 00 00 00 00 00 00 00 00 00 00 
{64} normal block at 0x000002610E16E000, 16 bytes long.
 Data: <&#224; t&#145;&#247;           > E0 02 74 91 F7 7F 00 00 00 00 00 00 00 00 00 00 
{63} normal block at 0x000002610E16DF60, 16 bytes long.
 Data: <  t&#145;&#247;           > 10 04 74 91 F7 7F 00 00 00 00 00 00 00 00 00 00 
{62} normal block at 0x000002610E16DCE0, 16 bytes long.
 Data: <p t&#145;&#247;           > 70 04 74 91 F7 7F 00 00 00 00 00 00 00 00 00 00 
{61} normal block at 0x000002610E16E0F0, 16 bytes long.
 Data: < &#192;r&#145;&#247;           > 18 C0 72 91 F7 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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