Task 38624961
| Name | cdk8_A22_A11_r0_2-QUICO_ATM_OpenFF23_NAGL_cdk8-0-6-RND6380_0 |
| Workunit | 31575289 |
| Created | 23 Apr 2026, 8:51:09 UTC |
| Sent | 23 Apr 2026, 8:51:15 UTC |
| Report deadline | 28 Apr 2026, 8:51:15 UTC |
| Received | 23 Apr 2026, 8:58:11 UTC |
| Server state | Over |
| Outcome | Computation error |
| Client state | Compute error |
| Exit status | 195 (0x000000C3) EXIT_CHILD_FAILED |
| Computer ID | 645421 |
| Run time | 4 min 50 sec |
| CPU time | 3 min 9 sec |
| Validate state | Invalid |
| Credit | 0.00 |
| Device peak FLOPS | 1,392.78 GFLOPS |
| Application version | ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121) windows_x86_64 |
| Peak working set size | 885.77 MB |
| Peak swap size | 5.33 GB |
| Peak disk usage | 1.42 GB |
Stderr output
<core_client_version>8.2.8</core_client_version>
<![CDATA[
<message>
The operating system cannot run (null).
(0xc3) - exit code 195 (0xc3)</message>
<stderr_txt>
01:51:48 (8272): wrapper (7.9.26016): starting
01:51:48 (8272): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A22_A11_0.pdb
QB_A22_A11_0.xml
QB_A22_A11.inpcrd
QB_A22_A11_input.yaml
QB_A22_A11.pdb
QB_A22_A11.prmtop
QB_A22_A11_sys.xml
run.bat
run.sh
01:51:50 (8272): Library/usr/bin/tar.exe exited; CPU time 0.000000
01:51:50 (8272): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\14\Scripts' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\14\Scripts' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated. Import 'openmm' instead.
Traceback (most recent call last):
File "<frozen runpy>", line 198, in _run_module_as_main
File "<frozen runpy>", line 88, in _run_code
File "C:\ProgramData\BOINC\slots\14\Scripts\rbfe_production.exe\__main__.py", line 7, in <module>
File "C:\ProgramData\BOINC\slots\14\Lib\site-packages\atom_openmm\rbfe_production.py", line 33, in rbfe_production
rx.scheduleJobs()
File "C:\ProgramData\BOINC\slots\14\Lib\site-packages\atom_openmm\async_re.py", line 321, in scheduleJobs
self.transport.ProcessJobQueue(min_time,cycle_time)
File "C:\ProgramData\BOINC\slots\14\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 186, in ProcessJobQueue
self.isDone(repl,0)
File "C:\ProgramData\BOINC\slots\14\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 287, in isDone
retcode = self._update_replica(job)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ProgramData\BOINC\slots\14\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 212, in _update_replica
pot = job['openmm_worker'].get_energy()
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ProgramData\BOINC\slots\14\Lib\site-packages\atom_openmm\ommworker.py", line 451, in get_energy
return self._worker_getenergy()
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ProgramData\BOINC\slots\14\Lib\site-packages\atom_openmm\ommworker.py", line 400, in _worker_getenergy
state = self.simulation.context.getState(getEnergy = True)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ProgramData\BOINC\slots\14\Lib\site-packages\openmm\openmm.py", line 5022, in getState
state = _openmm.Context_getState(self, types, enforcePeriodicBox, groups_mask)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
openmm.OpenMMException: Particle coordinate is NaN. For more information, see https://github.com/openmm/openmm/wiki/Frequently-Asked-Questions#nan
01:55:19 (8272): C:/Windows/system32/cmd.exe exited; CPU time 189.140625
01:55:19 (8272): app exit status: 0x16
01:55:19 (8272): called boinc_finish(195)
0 bytes in 0 Free Blocks.
256 bytes in 6 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 3544581 bytes.
Dumping objects ->
{3835201} normal block at 0x0000021FE9DDCAB0, 48 bytes long.
Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44
{3835190} normal block at 0x0000021FE8234C30, 48 bytes long.
Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44
{3835179} normal block at 0x0000021FE8234CA0, 48 bytes long.
Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61
{3835168} normal block at 0x0000021FE8234BC0, 48 bytes long.
Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44
{3835157} normal block at 0x0000021FE8234990, 48 bytes long.
Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61
{3835126} normal block at 0x0000021FE9E29F00, 64 bytes long.
Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44
..\api\boinc_api.cpp(309) : {3835113} normal block at 0x0000021FE822DD00, 8 bytes long.
Data: < Qè > 00 00 51 E8 1F 02 00 00
{3833961} normal block at 0x0000021FE822DC60, 8 bytes long.
Data: < Ö!è > 10 D6 21 E8 1F 02 00 00
..\zip\boinc_zip.cpp(122) : {312} normal block at 0x0000021FE8221040, 260 bytes long.
Data: < > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00
{297} normal block at 0x0000021FE8221F70, 80 bytes long.
Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C
{296} normal block at 0x0000021FE8235C40, 16 bytes long.
Data: <xe#è > 78 65 23 E8 1F 02 00 00 00 00 00 00 00 00 00 00
{295} normal block at 0x0000021FE8235EC0, 16 bytes long.
Data: <Pe#è > 50 65 23 E8 1F 02 00 00 00 00 00 00 00 00 00 00
{294} normal block at 0x0000021FE8230D40, 32 bytes long.
Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D
{293} normal block at 0x0000021FE8235BF0, 16 bytes long.
Data: <(e#è > 28 65 23 E8 1F 02 00 00 00 00 00 00 00 00 00 00
{292} normal block at 0x0000021FE8235E70, 16 bytes long.
Data: < e#è > 00 65 23 E8 1F 02 00 00 00 00 00 00 00 00 00 00
{291} normal block at 0x0000021FE82359C0, 16 bytes long.
Data: <Ød#è > D8 64 23 E8 1F 02 00 00 00 00 00 00 00 00 00 00
{290} normal block at 0x0000021FE82358D0, 16 bytes long.
Data: <°d#è > B0 64 23 E8 1F 02 00 00 00 00 00 00 00 00 00 00
{289} normal block at 0x0000021FE82348B0, 48 bytes long.
Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F
{288} normal block at 0x0000021FE8235E20, 16 bytes long.
Data: <hñ!è > 68 F1 21 E8 1F 02 00 00 00 00 00 00 00 00 00 00
{287} normal block at 0x0000021FE8230DA0, 32 bytes long.
Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69
{286} normal block at 0x0000021FE8235380, 16 bytes long.
Data: <@ñ!è > 40 F1 21 E8 1F 02 00 00 00 00 00 00 00 00 00 00
{284} normal block at 0x0000021FE8235290, 16 bytes long.
Data: < ñ!è > 18 F1 21 E8 1F 02 00 00 00 00 00 00 00 00 00 00
{283} normal block at 0x0000021FE82361E0, 16 bytes long.
Data: <ðð!è > F0 F0 21 E8 1F 02 00 00 00 00 00 00 00 00 00 00
{282} normal block at 0x0000021FE8235DD0, 16 bytes long.
Data: <Èð!è > C8 F0 21 E8 1F 02 00 00 00 00 00 00 00 00 00 00
{281} normal block at 0x0000021FE8235880, 16 bytes long.
Data: < ð!è > A0 F0 21 E8 1F 02 00 00 00 00 00 00 00 00 00 00
{280} normal block at 0x0000021FE8236140, 16 bytes long.
Data: <xð!è > 78 F0 21 E8 1F 02 00 00 00 00 00 00 00 00 00 00
{279} normal block at 0x0000021FE8230AA0, 32 bytes long.
Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55
{278} normal block at 0x0000021FE82356F0, 16 bytes long.
Data: <Pð!è > 50 F0 21 E8 1F 02 00 00 00 00 00 00 00 00 00 00
{277} normal block at 0x0000021FE821F050, 320 bytes long.
Data: <ðV#è   #è > F0 56 23 E8 1F 02 00 00 A0 0A 23 E8 1F 02 00 00
{276} normal block at 0x0000021FE82360F0, 16 bytes long.
Data: < d#è > 90 64 23 E8 1F 02 00 00 00 00 00 00 00 00 00 00
{275} normal block at 0x0000021FE82360A0, 16 bytes long.
Data: <hd#è > 68 64 23 E8 1F 02 00 00 00 00 00 00 00 00 00 00
{274} normal block at 0x0000021FE8231220, 32 bytes long.
Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65
{273} normal block at 0x0000021FE8236050, 16 bytes long.
Data: <@d#è > 40 64 23 E8 1F 02 00 00 00 00 00 00 00 00 00 00
{272} normal block at 0x0000021FE82307A0, 32 bytes long.
Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62
{271} normal block at 0x0000021FE8235330, 16 bytes long.
Data: < c#è > 88 63 23 E8 1F 02 00 00 00 00 00 00 00 00 00 00
{270} normal block at 0x0000021FE8235BA0, 16 bytes long.
Data: <`c#è > 60 63 23 E8 1F 02 00 00 00 00 00 00 00 00 00 00
{269} normal block at 0x0000021FE8235970, 16 bytes long.
Data: <8c#è > 38 63 23 E8 1F 02 00 00 00 00 00 00 00 00 00 00
{268} normal block at 0x0000021FE8235F10, 16 bytes long.
Data: < c#è > 10 63 23 E8 1F 02 00 00 00 00 00 00 00 00 00 00
{267} normal block at 0x0000021FE8235D30, 16 bytes long.
Data: <èb#è > E8 62 23 E8 1F 02 00 00 00 00 00 00 00 00 00 00
{266} normal block at 0x0000021FE82357E0, 16 bytes long.
Data: <Àb#è > C0 62 23 E8 1F 02 00 00 00 00 00 00 00 00 00 00
{264} normal block at 0x0000021FE8235830, 16 bytes long.
Data: < M#è > 80 4D 23 E8 1F 02 00 00 00 00 00 00 00 00 00 00
{263} normal block at 0x0000021FE8234D80, 40 bytes long.
Data: <0X#è Ÿâé > 30 58 23 E8 1F 02 00 00 00 9F E2 E9 1F 02 00 00
{262} normal block at 0x0000021FE8235CE0, 16 bytes long.
Data: < b#è > A0 62 23 E8 1F 02 00 00 00 00 00 00 00 00 00 00
{261} normal block at 0x0000021FE8236000, 16 bytes long.
Data: <xb#è > 78 62 23 E8 1F 02 00 00 00 00 00 00 00 00 00 00
{260} normal block at 0x0000021FE8230740, 32 bytes long.
Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F
{259} normal block at 0x0000021FE8235FB0, 16 bytes long.
Data: <Pb#è > 50 62 23 E8 1F 02 00 00 00 00 00 00 00 00 00 00
{258} normal block at 0x0000021FE8236250, 992 bytes long.
Data: <°_#è @ #è > B0 5F 23 E8 1F 02 00 00 40 07 23 E8 1F 02 00 00
{94} normal block at 0x0000021FE8230F20, 32 bytes long.
Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F
{93} normal block at 0x0000021FE822DDF0, 16 bytes long.
Data: <Pí!è > 50 ED 21 E8 1F 02 00 00 00 00 00 00 00 00 00 00
{92} normal block at 0x0000021FE821ED50, 40 bytes long.
Data: <ðÝ"è #è > F0 DD 22 E8 1F 02 00 00 20 0F 23 E8 1F 02 00 00
{71} normal block at 0x0000021FE822DE90, 16 bytes long.
Data: < ê‚­÷ > 80 EA 82 AD F7 7F 00 00 00 00 00 00 00 00 00 00
{70} normal block at 0x0000021FE822D670, 16 bytes long.
Data: <@é‚­÷ > 40 E9 82 AD F7 7F 00 00 00 00 00 00 00 00 00 00
{69} normal block at 0x0000021FE822D580, 16 bytes long.
Data: <øW ­÷ > F8 57 7F AD F7 7F 00 00 00 00 00 00 00 00 00 00
{68} normal block at 0x0000021FE822DCB0, 16 bytes long.
Data: <ØW ­÷ > D8 57 7F AD F7 7F 00 00 00 00 00 00 00 00 00 00
{67} normal block at 0x0000021FE822D350, 16 bytes long.
Data: <P ­÷ > 50 04 7F AD F7 7F 00 00 00 00 00 00 00 00 00 00
{66} normal block at 0x0000021FE822D3A0, 16 bytes long.
Data: <0 ­÷ > 30 04 7F AD F7 7F 00 00 00 00 00 00 00 00 00 00
{65} normal block at 0x0000021FE822D990, 16 bytes long.
Data: <à ­÷ > E0 02 7F AD F7 7F 00 00 00 00 00 00 00 00 00 00
{64} normal block at 0x0000021FE822D2B0, 16 bytes long.
Data: < ­÷ > 10 04 7F AD F7 7F 00 00 00 00 00 00 00 00 00 00
{63} normal block at 0x0000021FE822DB20, 16 bytes long.
Data: <p ­÷ > 70 04 7F AD F7 7F 00 00 00 00 00 00 00 00 00 00
{62} normal block at 0x0000021FE822D940, 16 bytes long.
Data: < À}­÷ > 18 C0 7D AD F7 7F 00 00 00 00 00 00 00 00 00 00
Object dump complete.
</stderr_txt>
]]>
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