Task 38622607

Name p38_2_A05_A33_r0_5-QUICO_ATM_GAFF2_NAGL_p38_2-2-6-RND3720_1
Workunit 31573328
Created 20 Apr 2026, 20:17:05 UTC
Sent 20 Apr 2026, 20:17:10 UTC
Report deadline 25 Apr 2026, 20:17:10 UTC
Received 21 Apr 2026, 4:04:29 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 618582
Run time 4 hours 52 min 23 sec
CPU time 4 hours 52 min 23 sec
Validate state Valid
Credit 750,000.00
Device peak FLOPS 83,073.52 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 281.11 MB
Peak swap size 13.15 GB
Peak disk usage 3.07 GB

Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
16:13:11 (13976): wrapper (7.9.26016): starting
16:13:11 (13976): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A05_A33_0.pdb
QB_A05_A33_0.xml
QB_A05_A33.inpcrd
QB_A05_A33_input.yaml
QB_A05_A33.pdb
QB_A05_A33.prmtop
QB_A05_A33_sys.xml
run.bat
run.sh
16:13:13 (13976): Library/usr/bin/tar.exe exited; CPU time 0.000000
16:13:13 (13976): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
21:01:01 (13976): C:/Windows/system32/cmd.exe exited; CPU time 17543.968750
21:01:01 (13976): called boinc_finish(0)
0 bytes in 0 Free Blocks.
566 bytes in 8 Normal Blocks.
2288 bytes in 2 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 227322539 bytes.
Dumping objects ->
{3835322} normal block at 0x00000190C56D3770, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835311} normal block at 0x00000190C56D3C40, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835300} normal block at 0x00000190C56D41F0, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{3835289} normal block at 0x00000190C3885310, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835278} normal block at 0x00000190C38852A0, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{3835247} normal block at 0x00000190C5644A50, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835236} normal block at 0x00000190C55703B0, 155 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
..\api\boinc_api.cpp(309) : {3835233} normal block at 0x00000190C387DD70, 8 bytes long.
 Data: <   &#195;    > 00 00 80 C3 90 01 00 00 
{3834585} normal block at 0x00000190C5570570, 155 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
{3833961} normal block at 0x00000190C387D820, 8 bytes long.
 Data: < &#215;&#134;&#195;    > 80 D7 86 C3 90 01 00 00 
..\zip\boinc_zip.cpp(122) : {312} normal block at 0x00000190C3870F30, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{297} normal block at 0x00000190C3871E10, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{296} normal block at 0x00000190C3885AA0, 16 bytes long.
 Data: < j &#195;            > 18 6A 88 C3 90 01 00 00 00 00 00 00 00 00 00 00 
{295} normal block at 0x00000190C38864A0, 16 bytes long.
 Data: <&#240;i &#195;            > F0 69 88 C3 90 01 00 00 00 00 00 00 00 00 00 00 
{294} normal block at 0x00000190C38809D0, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{293} normal block at 0x00000190C3885C80, 16 bytes long.
 Data: <&#200;i &#195;            > C8 69 88 C3 90 01 00 00 00 00 00 00 00 00 00 00 
{292} normal block at 0x00000190C3885A50, 16 bytes long.
 Data: <&#160;i &#195;            > A0 69 88 C3 90 01 00 00 00 00 00 00 00 00 00 00 
{291} normal block at 0x00000190C3885870, 16 bytes long.
 Data: <xi &#195;            > 78 69 88 C3 90 01 00 00 00 00 00 00 00 00 00 00 
{290} normal block at 0x00000190C3886360, 16 bytes long.
 Data: <Pi &#195;            > 50 69 88 C3 90 01 00 00 00 00 00 00 00 00 00 00 
{289} normal block at 0x00000190C3885620, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{288} normal block at 0x00000190C3885D20, 16 bytes long.
 Data: <&#216;&#242;&#134;&#195;            > D8 F2 86 C3 90 01 00 00 00 00 00 00 00 00 00 00 
{287} normal block at 0x00000190C3881330, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{286} normal block at 0x00000190C3885E60, 16 bytes long.
 Data: <&#176;&#242;&#134;&#195;            > B0 F2 86 C3 90 01 00 00 00 00 00 00 00 00 00 00 
{284} normal block at 0x00000190C3885C30, 16 bytes long.
 Data: < &#242;&#134;&#195;            > 88 F2 86 C3 90 01 00 00 00 00 00 00 00 00 00 00 
{283} normal block at 0x00000190C3885730, 16 bytes long.
 Data: <`&#242;&#134;&#195;            > 60 F2 86 C3 90 01 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x00000190C3886310, 16 bytes long.
 Data: <8&#242;&#134;&#195;            > 38 F2 86 C3 90 01 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x00000190C3885CD0, 16 bytes long.
 Data: < &#242;&#134;&#195;            > 10 F2 86 C3 90 01 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x00000190C3885B90, 16 bytes long.
 Data: <&#232;&#241;&#134;&#195;            > E8 F1 86 C3 90 01 00 00 00 00 00 00 00 00 00 00 
{279} normal block at 0x00000190C38812D0, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{278} normal block at 0x00000190C3886450, 16 bytes long.
 Data: <&#192;&#241;&#134;&#195;            > C0 F1 86 C3 90 01 00 00 00 00 00 00 00 00 00 00 
{277} normal block at 0x00000190C386F1C0, 320 bytes long.
 Data: <Pd &#195;    &#208;  &#195;    > 50 64 88 C3 90 01 00 00 D0 12 88 C3 90 01 00 00 
{276} normal block at 0x00000190C3885820, 16 bytes long.
 Data: <0i &#195;            > 30 69 88 C3 90 01 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x00000190C3885A00, 16 bytes long.
 Data: < i &#195;            > 08 69 88 C3 90 01 00 00 00 00 00 00 00 00 00 00 
{274} normal block at 0x00000190C3880EB0, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{273} normal block at 0x00000190C3885B40, 16 bytes long.
 Data: <&#224;h &#195;            > E0 68 88 C3 90 01 00 00 00 00 00 00 00 00 00 00 
{272} normal block at 0x00000190C38818D0, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{271} normal block at 0x00000190C3885DC0, 16 bytes long.
 Data: <(h &#195;            > 28 68 88 C3 90 01 00 00 00 00 00 00 00 00 00 00 
{270} normal block at 0x00000190C3885EB0, 16 bytes long.
 Data: < h &#195;            > 00 68 88 C3 90 01 00 00 00 00 00 00 00 00 00 00 
{269} normal block at 0x00000190C3886680, 16 bytes long.
 Data: <&#216;g &#195;            > D8 67 88 C3 90 01 00 00 00 00 00 00 00 00 00 00 
{268} normal block at 0x00000190C3885BE0, 16 bytes long.
 Data: <&#176;g &#195;            > B0 67 88 C3 90 01 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x00000190C38865E0, 16 bytes long.
 Data: < g &#195;            > 88 67 88 C3 90 01 00 00 00 00 00 00 00 00 00 00 
{266} normal block at 0x00000190C3886400, 16 bytes long.
 Data: <`g &#195;            > 60 67 88 C3 90 01 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x00000190C38862C0, 16 bytes long.
 Data: <`T &#195;            > 60 54 88 C3 90 01 00 00 00 00 00 00 00 00 00 00 
{263} normal block at 0x00000190C3885460, 40 bytes long.
 Data: <&#192;b &#195;    PJd&#197;    > C0 62 88 C3 90 01 00 00 50 4A 64 C5 90 01 00 00 
{262} normal block at 0x00000190C3885F00, 16 bytes long.
 Data: <@g &#195;            > 40 67 88 C3 90 01 00 00 00 00 00 00 00 00 00 00 
{261} normal block at 0x00000190C38864F0, 16 bytes long.
 Data: < g &#195;            > 18 67 88 C3 90 01 00 00 00 00 00 00 00 00 00 00 
{260} normal block at 0x00000190C3881210, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{259} normal block at 0x00000190C38863B0, 16 bytes long.
 Data: <&#240;f &#195;            > F0 66 88 C3 90 01 00 00 00 00 00 00 00 00 00 00 
{258} normal block at 0x00000190C38866F0, 992 bytes long.
 Data: <&#176;c &#195;       &#195;    > B0 63 88 C3 90 01 00 00 10 12 88 C3 90 01 00 00 
{94} normal block at 0x00000190C3880FD0, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{93} normal block at 0x00000190C387D780, 16 bytes long.
 Data: <pP &#195;            > 70 50 88 C3 90 01 00 00 00 00 00 00 00 00 00 00 
{92} normal block at 0x00000190C3885070, 40 bytes long.
 Data: < &#215;&#135;&#195;    &#208;  &#195;    > 80 D7 87 C3 90 01 00 00 D0 0F 88 C3 90 01 00 00 
{71} normal block at 0x00000190C387D690, 16 bytes long.
 Data: < &#234;&#193; &#247;           > 80 EA C1 8F F7 7F 00 00 00 00 00 00 00 00 00 00 
{70} normal block at 0x00000190C387DF00, 16 bytes long.
 Data: <@&#233;&#193; &#247;           > 40 E9 C1 8F F7 7F 00 00 00 00 00 00 00 00 00 00 
{69} normal block at 0x00000190C387D550, 16 bytes long.
 Data: <&#248;W&#190; &#247;           > F8 57 BE 8F F7 7F 00 00 00 00 00 00 00 00 00 00 
{68} normal block at 0x00000190C387DA50, 16 bytes long.
 Data: <&#216;W&#190; &#247;           > D8 57 BE 8F F7 7F 00 00 00 00 00 00 00 00 00 00 
{67} normal block at 0x00000190C387D460, 16 bytes long.
 Data: <P &#190; &#247;           > 50 04 BE 8F F7 7F 00 00 00 00 00 00 00 00 00 00 
{66} normal block at 0x00000190C387DE10, 16 bytes long.
 Data: <0 &#190; &#247;           > 30 04 BE 8F F7 7F 00 00 00 00 00 00 00 00 00 00 
{65} normal block at 0x00000190C387D5F0, 16 bytes long.
 Data: <&#224; &#190; &#247;           > E0 02 BE 8F F7 7F 00 00 00 00 00 00 00 00 00 00 
{64} normal block at 0x00000190C387D4B0, 16 bytes long.
 Data: <  &#190; &#247;           > 10 04 BE 8F F7 7F 00 00 00 00 00 00 00 00 00 00 
{63} normal block at 0x00000190C387DA00, 16 bytes long.
 Data: <p &#190; &#247;           > 70 04 BE 8F F7 7F 00 00 00 00 00 00 00 00 00 00 
{62} normal block at 0x00000190C387DAF0, 16 bytes long.
 Data: < &#192;&#188; &#247;           > 18 C0 BC 8F F7 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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