Task 38622425

Name p38_2_A04_A01_r0_1-QUICO_ATM_GAFF2_NAGL_p38_2-3-6-RND3140_0
Workunit 31573189
Created 20 Apr 2026, 17:54:27 UTC
Sent 20 Apr 2026, 17:54:32 UTC
Report deadline 25 Apr 2026, 17:54:32 UTC
Received 21 Apr 2026, 14:42:09 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 525469
Run time 7 hours 5 min 36 sec
CPU time 7 hours 5 min 36 sec
Validate state Valid
Credit 750,000.00
Device peak FLOPS 8,882.16 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 669.97 MB
Peak swap size 6.77 GB
Peak disk usage 4.15 GB

Stderr output

<core_client_version>8.2.9</core_client_version>
<![CDATA[
<stderr_txt>
00:42:40 (64036): wrapper (7.9.26016): starting
00:42:40 (64036): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A04_A01_0.pdb
QB_A04_A01_0.xml
QB_A04_A01.inpcrd
QB_A04_A01_input.yaml
QB_A04_A01.pdb
QB_A04_A01.prmtop
QB_A04_A01_sys.xml
run.bat
run.sh
00:42:42 (64036): Library/usr/bin/tar.exe exited; CPU time 0.000000
00:42:42 (64036): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
07:41:15 (64036): C:/Windows/system32/cmd.exe exited; CPU time 25536.781250
07:41:15 (64036): called boinc_finish(0)
0 bytes in 0 Free Blocks.
460 bytes in 8 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 479369091 bytes.
Dumping objects ->
{3835452} normal block at 0x0000029D11035110, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835441} normal block at 0x0000029D110350A0, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835430} normal block at 0x0000029D11035340, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{3835419} normal block at 0x0000029D110357A0, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835408} normal block at 0x0000029D11035730, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{3835377} normal block at 0x0000029D12C24EB0, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835366} normal block at 0x0000029D12C3F500, 102 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
..\api\boinc_api.cpp(309) : {3835363} normal block at 0x0000029D1102D6F0, 8 bytes long.
 Data: <  &#253;     > 00 00 FD 10 9D 02 00 00 
{3834643} normal block at 0x0000029D12C3EAB0, 102 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
{3833951} normal block at 0x0000029D1102D650, 8 bytes long.
 Data: <0Q&#200;     > 30 51 C8 12 9D 02 00 00 
..\zip\boinc_zip.cpp(122) : {307} normal block at 0x0000029D110210E0, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{292} normal block at 0x0000029D11021B40, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{291} normal block at 0x0000029D11035E90, 16 bytes long.
 Data: < o              > 98 6F 03 11 9D 02 00 00 00 00 00 00 00 00 00 00 
{290} normal block at 0x0000029D11035DA0, 16 bytes long.
 Data: <po              > 70 6F 03 11 9D 02 00 00 00 00 00 00 00 00 00 00 
{289} normal block at 0x0000029D11030420, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{288} normal block at 0x0000029D11035D00, 16 bytes long.
 Data: <Ho              > 48 6F 03 11 9D 02 00 00 00 00 00 00 00 00 00 00 
{287} normal block at 0x0000029D11036610, 16 bytes long.
 Data: < o              > 20 6F 03 11 9D 02 00 00 00 00 00 00 00 00 00 00 
{286} normal block at 0x0000029D110363E0, 16 bytes long.
 Data: <&#248;n              > F8 6E 03 11 9D 02 00 00 00 00 00 00 00 00 00 00 
{285} normal block at 0x0000029D11035E40, 16 bytes long.
 Data: <&#208;n              > D0 6E 03 11 9D 02 00 00 00 00 00 00 00 00 00 00 
{284} normal block at 0x0000029D110355E0, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{283} normal block at 0x0000029D11036660, 16 bytes long.
 Data: < &#244;              > 88 F4 01 11 9D 02 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x0000029D11030120, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{281} normal block at 0x0000029D11035CB0, 16 bytes long.
 Data: <`&#244;              > 60 F4 01 11 9D 02 00 00 00 00 00 00 00 00 00 00 
{279} normal block at 0x0000029D110365C0, 16 bytes long.
 Data: <8&#244;              > 38 F4 01 11 9D 02 00 00 00 00 00 00 00 00 00 00 
{278} normal block at 0x0000029D11036C00, 16 bytes long.
 Data: < &#244;              > 10 F4 01 11 9D 02 00 00 00 00 00 00 00 00 00 00 
{277} normal block at 0x0000029D110362A0, 16 bytes long.
 Data: <&#232;&#243;              > E8 F3 01 11 9D 02 00 00 00 00 00 00 00 00 00 00 
{276} normal block at 0x0000029D11036B60, 16 bytes long.
 Data: <&#192;&#243;              > C0 F3 01 11 9D 02 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x0000029D11036700, 16 bytes long.
 Data: < &#243;              > 98 F3 01 11 9D 02 00 00 00 00 00 00 00 00 00 00 
{274} normal block at 0x0000029D11030540, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{273} normal block at 0x0000029D11036BB0, 16 bytes long.
 Data: <p&#243;              > 70 F3 01 11 9D 02 00 00 00 00 00 00 00 00 00 00 
{272} normal block at 0x0000029D1101F370, 320 bytes long.
 Data: <&#176;k      @       > B0 6B 03 11 9D 02 00 00 40 05 03 11 9D 02 00 00 
{271} normal block at 0x0000029D11036480, 16 bytes long.
 Data: <&#176;n              > B0 6E 03 11 9D 02 00 00 00 00 00 00 00 00 00 00 
{270} normal block at 0x0000029D11036570, 16 bytes long.
 Data: < n              > 88 6E 03 11 9D 02 00 00 00 00 00 00 00 00 00 00 
{269} normal block at 0x0000029D1102FA00, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{268} normal block at 0x0000029D110367A0, 16 bytes long.
 Data: <`n              > 60 6E 03 11 9D 02 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x0000029D1102FBE0, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{266} normal block at 0x0000029D11036AC0, 16 bytes long.
 Data: <&#168;m              > A8 6D 03 11 9D 02 00 00 00 00 00 00 00 00 00 00 
{265} normal block at 0x0000029D11035DF0, 16 bytes long.
 Data: < m              > 80 6D 03 11 9D 02 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x0000029D11036A20, 16 bytes long.
 Data: <Xm              > 58 6D 03 11 9D 02 00 00 00 00 00 00 00 00 00 00 
{263} normal block at 0x0000029D11035D50, 16 bytes long.
 Data: <0m              > 30 6D 03 11 9D 02 00 00 00 00 00 00 00 00 00 00 
{262} normal block at 0x0000029D11036520, 16 bytes long.
 Data: < m              > 08 6D 03 11 9D 02 00 00 00 00 00 00 00 00 00 00 
{261} normal block at 0x0000029D11036980, 16 bytes long.
 Data: <&#224;l              > E0 6C 03 11 9D 02 00 00 00 00 00 00 00 00 00 00 
{259} normal block at 0x0000029D110361B0, 16 bytes long.
 Data: < T              > 90 54 03 11 9D 02 00 00 00 00 00 00 00 00 00 00 
{258} normal block at 0x0000029D11035490, 40 bytes long.
 Data: <&#176;a      &#176;N&#194;     > B0 61 03 11 9D 02 00 00 B0 4E C2 12 9D 02 00 00 
{257} normal block at 0x0000029D11036A70, 16 bytes long.
 Data: <&#192;l              > C0 6C 03 11 9D 02 00 00 00 00 00 00 00 00 00 00 
{256} normal block at 0x0000029D11036110, 16 bytes long.
 Data: < l              > 98 6C 03 11 9D 02 00 00 00 00 00 00 00 00 00 00 
{255} normal block at 0x0000029D1102F7C0, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{254} normal block at 0x0000029D11036750, 16 bytes long.
 Data: <pl              > 70 6C 03 11 9D 02 00 00 00 00 00 00 00 00 00 00 
{253} normal block at 0x0000029D11036C70, 992 bytes long.
 Data: <Pg      &#192;&#247;      > 50 67 03 11 9D 02 00 00 C0 F7 02 11 9D 02 00 00 
{89} normal block at 0x0000029D1102F9A0, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{88} normal block at 0x0000029D1102DD80, 16 bytes long.
 Data: <P&#229;              > 50 E5 01 11 9D 02 00 00 00 00 00 00 00 00 00 00 
{87} normal block at 0x0000029D1101E550, 40 bytes long.
 Data: < &#221;      &#160;&#249;      > 80 DD 02 11 9D 02 00 00 A0 F9 02 11 9D 02 00 00 
{66} normal block at 0x0000029D1102D510, 16 bytes long.
 Data: < &#234;]g&#247;           > 80 EA 5D 67 F7 7F 00 00 00 00 00 00 00 00 00 00 
{65} normal block at 0x0000029D1102D920, 16 bytes long.
 Data: <@&#233;]g&#247;           > 40 E9 5D 67 F7 7F 00 00 00 00 00 00 00 00 00 00 
{64} normal block at 0x0000029D1102DEC0, 16 bytes long.
 Data: <&#248;WZg&#247;           > F8 57 5A 67 F7 7F 00 00 00 00 00 00 00 00 00 00 
{63} normal block at 0x0000029D1102D4C0, 16 bytes long.
 Data: <&#216;WZg&#247;           > D8 57 5A 67 F7 7F 00 00 00 00 00 00 00 00 00 00 
{62} normal block at 0x0000029D1102E0A0, 16 bytes long.
 Data: <P Zg&#247;           > 50 04 5A 67 F7 7F 00 00 00 00 00 00 00 00 00 00 
{61} normal block at 0x0000029D1102E140, 16 bytes long.
 Data: <0 Zg&#247;           > 30 04 5A 67 F7 7F 00 00 00 00 00 00 00 00 00 00 
{60} normal block at 0x0000029D1102DBA0, 16 bytes long.
 Data: <&#224; Zg&#247;           > E0 02 5A 67 F7 7F 00 00 00 00 00 00 00 00 00 00 
{59} normal block at 0x0000029D1102DE20, 16 bytes long.
 Data: <  Zg&#247;           > 10 04 5A 67 F7 7F 00 00 00 00 00 00 00 00 00 00 
{58} normal block at 0x0000029D1102DD30, 16 bytes long.
 Data: <p Zg&#247;           > 70 04 5A 67 F7 7F 00 00 00 00 00 00 00 00 00 00 
{57} normal block at 0x0000029D1102D6A0, 16 bytes long.
 Data: < &#192;Xg&#247;           > 18 C0 58 67 F7 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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