Task 38622165

Name CDK2_A09_A01_r0_5-QUICO_ATM_GAFF2_NAGL_CDK2-5-6-RND0865_0
Workunit 31572967
Created 20 Apr 2026, 14:45:27 UTC
Sent 20 Apr 2026, 14:45:34 UTC
Report deadline 25 Apr 2026, 14:45:34 UTC
Received 20 Apr 2026, 19:48:17 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 535048
Run time 5 hours 1 min 26 sec
CPU time 4 hours 39 min 59 sec
Validate state Valid
Credit 750,000.00
Device peak FLOPS 29,358.27 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 821.57 MB
Peak swap size 13.16 GB
Peak disk usage 3.14 GB

Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
07:46:36 (18728): wrapper (7.9.26016): starting
07:46:36 (18728): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A09_A01_0.pdb
QB_A09_A01_0.xml
QB_A09_A01.inpcrd
QB_A09_A01_input.yaml
QB_A09_A01.pdb
QB_A09_A01.prmtop
QB_A09_A01_sys.xml
run.bat
run.sh
07:46:39 (18728): Library/usr/bin/tar.exe exited; CPU time 0.000000
07:46:39 (18728): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\1\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\1\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
tar: r*/*.dcd: Cannot stat: No such file or directory
tar: Exiting with failure status due to previous errors
12:47:08 (18728): C:/Windows/system32/cmd.exe exited; CPU time 16799.359375
12:47:08 (18728): called boinc_finish(0)
0 bytes in 0 Free Blocks.
460 bytes in 8 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 231195139 bytes.
Dumping objects ->
{3835316} normal block at 0x000002E197345140, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835305} normal block at 0x000002E1973453E0, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835294} normal block at 0x000002E1973455A0, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{3835283} normal block at 0x000002E1973450D0, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835272} normal block at 0x000002E1973454C0, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{3835241} normal block at 0x000002E199139A10, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835230} normal block at 0x000002E19914E730, 102 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
..\api\boinc_api.cpp(309) : {3835227} normal block at 0x000002E19733D480, 8 bytes long.
 Data: <   &#151;&#225;   > 00 00 9D 97 E1 02 00 00 
{3834576} normal block at 0x000002E19914F180, 102 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
{3833959} normal block at 0x000002E19733DBB0, 8 bytes long.
 Data: <@&#216;2&#151;&#225;   > 40 D8 32 97 E1 02 00 00 
..\zip\boinc_zip.cpp(122) : {311} normal block at 0x000002E197331270, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{296} normal block at 0x000002E197332860, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{295} normal block at 0x000002E197346330, 16 bytes long.
 Data: <&#200;k4&#151;&#225;           > C8 6B 34 97 E1 02 00 00 00 00 00 00 00 00 00 00 
{294} normal block at 0x000002E197346600, 16 bytes long.
 Data: <&#160;k4&#151;&#225;           > A0 6B 34 97 E1 02 00 00 00 00 00 00 00 00 00 00 
{293} normal block at 0x000002E197341610, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{292} normal block at 0x000002E197346290, 16 bytes long.
 Data: <xk4&#151;&#225;           > 78 6B 34 97 E1 02 00 00 00 00 00 00 00 00 00 00 
{291} normal block at 0x000002E1973465B0, 16 bytes long.
 Data: <Pk4&#151;&#225;           > 50 6B 34 97 E1 02 00 00 00 00 00 00 00 00 00 00 
{290} normal block at 0x000002E197345C00, 16 bytes long.
 Data: <(k4&#151;&#225;           > 28 6B 34 97 E1 02 00 00 00 00 00 00 00 00 00 00 
{289} normal block at 0x000002E197345BB0, 16 bytes long.
 Data: < k4&#151;&#225;           > 00 6B 34 97 E1 02 00 00 00 00 00 00 00 00 00 00 
{288} normal block at 0x000002E197345290, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{287} normal block at 0x000002E197345AC0, 16 bytes long.
 Data: < &#243;2&#151;&#225;           > 98 F3 32 97 E1 02 00 00 00 00 00 00 00 00 00 00 
{286} normal block at 0x000002E197340FB0, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{285} normal block at 0x000002E197345A70, 16 bytes long.
 Data: <p&#243;2&#151;&#225;           > 70 F3 32 97 E1 02 00 00 00 00 00 00 00 00 00 00 
{283} normal block at 0x000002E197345A20, 16 bytes long.
 Data: <H&#243;2&#151;&#225;           > 48 F3 32 97 E1 02 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x000002E1973464C0, 16 bytes long.
 Data: < &#243;2&#151;&#225;           > 20 F3 32 97 E1 02 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x000002E197345DE0, 16 bytes long.
 Data: <&#248;&#242;2&#151;&#225;           > F8 F2 32 97 E1 02 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x000002E197345B60, 16 bytes long.
 Data: <&#208;&#242;2&#151;&#225;           > D0 F2 32 97 E1 02 00 00 00 00 00 00 00 00 00 00 
{279} normal block at 0x000002E197345930, 16 bytes long.
 Data: <&#168;&#242;2&#151;&#225;           > A8 F2 32 97 E1 02 00 00 00 00 00 00 00 00 00 00 
{278} normal block at 0x000002E1973419D0, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{277} normal block at 0x000002E197346790, 16 bytes long.
 Data: < &#242;2&#151;&#225;           > 80 F2 32 97 E1 02 00 00 00 00 00 00 00 00 00 00 
{276} normal block at 0x000002E19732F280, 320 bytes long.
 Data: < g4&#151;&#225;   &#208; 4&#151;&#225;   > 90 67 34 97 E1 02 00 00 D0 19 34 97 E1 02 00 00 
{275} normal block at 0x000002E197346060, 16 bytes long.
 Data: <&#224;j4&#151;&#225;           > E0 6A 34 97 E1 02 00 00 00 00 00 00 00 00 00 00 
{274} normal block at 0x000002E1973461F0, 16 bytes long.
 Data: <&#184;j4&#151;&#225;           > B8 6A 34 97 E1 02 00 00 00 00 00 00 00 00 00 00 
{273} normal block at 0x000002E197340F50, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{272} normal block at 0x000002E197346100, 16 bytes long.
 Data: < j4&#151;&#225;           > 90 6A 34 97 E1 02 00 00 00 00 00 00 00 00 00 00 
{271} normal block at 0x000002E197340D10, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{270} normal block at 0x000002E197345CA0, 16 bytes long.
 Data: <&#216;i4&#151;&#225;           > D8 69 34 97 E1 02 00 00 00 00 00 00 00 00 00 00 
{269} normal block at 0x000002E1973467E0, 16 bytes long.
 Data: <&#176;i4&#151;&#225;           > B0 69 34 97 E1 02 00 00 00 00 00 00 00 00 00 00 
{268} normal block at 0x000002E197345B10, 16 bytes long.
 Data: < i4&#151;&#225;           > 88 69 34 97 E1 02 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x000002E197346510, 16 bytes long.
 Data: <`i4&#151;&#225;           > 60 69 34 97 E1 02 00 00 00 00 00 00 00 00 00 00 
{266} normal block at 0x000002E197345F20, 16 bytes long.
 Data: <8i4&#151;&#225;           > 38 69 34 97 E1 02 00 00 00 00 00 00 00 00 00 00 
{265} normal block at 0x000002E197346150, 16 bytes long.
 Data: < i4&#151;&#225;           > 10 69 34 97 E1 02 00 00 00 00 00 00 00 00 00 00 
{263} normal block at 0x000002E197345ED0, 16 bytes long.
 Data: <PT4&#151;&#225;           > 50 54 34 97 E1 02 00 00 00 00 00 00 00 00 00 00 
{262} normal block at 0x000002E197345450, 40 bytes long.
 Data: <&#208;^4&#151;&#225;    &#154;  &#225;   > D0 5E 34 97 E1 02 00 00 10 9A 13 99 E1 02 00 00 
{261} normal block at 0x000002E197346740, 16 bytes long.
 Data: <&#240;h4&#151;&#225;           > F0 68 34 97 E1 02 00 00 00 00 00 00 00 00 00 00 
{260} normal block at 0x000002E197346560, 16 bytes long.
 Data: <&#200;h4&#151;&#225;           > C8 68 34 97 E1 02 00 00 00 00 00 00 00 00 00 00 
{259} normal block at 0x000002E197341010, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{258} normal block at 0x000002E197346830, 16 bytes long.
 Data: <&#160;h4&#151;&#225;           > A0 68 34 97 E1 02 00 00 00 00 00 00 00 00 00 00 
{257} normal block at 0x000002E1973468A0, 992 bytes long.
 Data: <0h4&#151;&#225;     4&#151;&#225;   > 30 68 34 97 E1 02 00 00 10 10 34 97 E1 02 00 00 
{93} normal block at 0x000002E197340EF0, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{92} normal block at 0x000002E19733D5C0, 16 bytes long.
 Data: <0&#230;2&#151;&#225;           > 30 E6 32 97 E1 02 00 00 00 00 00 00 00 00 00 00 
{91} normal block at 0x000002E19732E630, 40 bytes long.
 Data: <&#192;&#213;3&#151;&#225;   &#240; 4&#151;&#225;   > C0 D5 33 97 E1 02 00 00 F0 0E 34 97 E1 02 00 00 
{70} normal block at 0x000002E19733D660, 16 bytes long.
 Data: < &#234;&#147;&#199;&#246;           > 80 EA 93 C7 F6 7F 00 00 00 00 00 00 00 00 00 00 
{69} normal block at 0x000002E19733D430, 16 bytes long.
 Data: <@&#233;&#147;&#199;&#246;           > 40 E9 93 C7 F6 7F 00 00 00 00 00 00 00 00 00 00 
{68} normal block at 0x000002E19733D9D0, 16 bytes long.
 Data: <&#248;W &#199;&#246;           > F8 57 90 C7 F6 7F 00 00 00 00 00 00 00 00 00 00 
{67} normal block at 0x000002E19733DA70, 16 bytes long.
 Data: <&#216;W &#199;&#246;           > D8 57 90 C7 F6 7F 00 00 00 00 00 00 00 00 00 00 
{66} normal block at 0x000002E19733DED0, 16 bytes long.
 Data: <P  &#199;&#246;           > 50 04 90 C7 F6 7F 00 00 00 00 00 00 00 00 00 00 
{65} normal block at 0x000002E19733E0B0, 16 bytes long.
 Data: <0  &#199;&#246;           > 30 04 90 C7 F6 7F 00 00 00 00 00 00 00 00 00 00 
{64} normal block at 0x000002E19733DC50, 16 bytes long.
 Data: <&#224;  &#199;&#246;           > E0 02 90 C7 F6 7F 00 00 00 00 00 00 00 00 00 00 
{63} normal block at 0x000002E19733D200, 16 bytes long.
 Data: <   &#199;&#246;           > 10 04 90 C7 F6 7F 00 00 00 00 00 00 00 00 00 00 
{62} normal block at 0x000002E19733E060, 16 bytes long.
 Data: <p  &#199;&#246;           > 70 04 90 C7 F6 7F 00 00 00 00 00 00 00 00 00 00 
{61} normal block at 0x000002E19733E100, 16 bytes long.
 Data: < &#192;&#142;&#199;&#246;           > 18 C0 8E C7 F6 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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