Task 38621700

Name HIF2A_2_A28_A34_r0_1-QUICO_ATM_GAFF2_NAGL_hif2a_2-5-6-RND6086_0
Workunit 31572562
Created 20 Apr 2026, 10:55:38 UTC
Sent 20 Apr 2026, 10:55:41 UTC
Report deadline 25 Apr 2026, 10:55:41 UTC
Received 21 Apr 2026, 4:02:02 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 525469
Run time 3 hours 32 min 53 sec
CPU time 3 hours 30 min 38 sec
Validate state Valid
Credit 750,000.00
Device peak FLOPS 8,882.16 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 432.03 MB
Peak swap size 6.46 GB
Peak disk usage 2.90 GB

Stderr output

<core_client_version>8.2.9</core_client_version>
<![CDATA[
<stderr_txt>
17:29:12 (28508): wrapper (7.9.26016): starting
17:29:12 (28508): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A28_A34_0.pdb
QB_A28_A34_0.xml
QB_A28_A34.inpcrd
QB_A28_A34_input.yaml
QB_A28_A34.pdb
QB_A28_A34.prmtop
QB_A28_A34_sys.xml
run.bat
run.sh
17:29:13 (28508): Library/usr/bin/tar.exe exited; CPU time 0.000000
17:29:13 (28508): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
21:00:56 (28508): C:/Windows/system32/cmd.exe exited; CPU time 12638.109375
21:00:56 (28508): called boinc_finish(0)
0 bytes in 0 Free Blocks.
460 bytes in 8 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 242605841 bytes.
Dumping objects ->
{3835452} normal block at 0x000002DE443F50A0, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835441} normal block at 0x000002DE443F5730, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835430} normal block at 0x000002DE443F56C0, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{3835419} normal block at 0x000002DE443F5650, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835408} normal block at 0x000002DE443F55E0, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{3835377} normal block at 0x000002DE46106D30, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835366} normal block at 0x000002DE4611F0E0, 102 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
..\api\boinc_api.cpp(309) : {3835363} normal block at 0x000002DE443ED560, 8 bytes long.
 Data: <   D&#222;   > 00 00 88 44 DE 02 00 00 
{3834643} normal block at 0x000002DE4611ED70, 102 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
{3833951} normal block at 0x000002DE443EE2D0, 8 bytes long.
 Data: <0Q F&#222;   > 30 51 16 46 DE 02 00 00 
..\zip\boinc_zip.cpp(122) : {307} normal block at 0x000002DE443E0FA0, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{292} normal block at 0x000002DE443E20E0, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{291} normal block at 0x000002DE443F5E40, 16 bytes long.
 Data: < o?D&#222;           > 98 6F 3F 44 DE 02 00 00 00 00 00 00 00 00 00 00 
{290} normal block at 0x000002DE443F66B0, 16 bytes long.
 Data: <po?D&#222;           > 70 6F 3F 44 DE 02 00 00 00 00 00 00 00 00 00 00 
{289} normal block at 0x000002DE443EFCA0, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{288} normal block at 0x000002DE443F6A70, 16 bytes long.
 Data: <Ho?D&#222;           > 48 6F 3F 44 DE 02 00 00 00 00 00 00 00 00 00 00 
{287} normal block at 0x000002DE443F5F30, 16 bytes long.
 Data: < o?D&#222;           > 20 6F 3F 44 DE 02 00 00 00 00 00 00 00 00 00 00 
{286} normal block at 0x000002DE443F6B60, 16 bytes long.
 Data: <&#248;n?D&#222;           > F8 6E 3F 44 DE 02 00 00 00 00 00 00 00 00 00 00 
{285} normal block at 0x000002DE443F6070, 16 bytes long.
 Data: <&#208;n?D&#222;           > D0 6E 3F 44 DE 02 00 00 00 00 00 00 00 00 00 00 
{284} normal block at 0x000002DE443F52D0, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{283} normal block at 0x000002DE443F6660, 16 bytes long.
 Data: < &#244;=D&#222;           > 88 F4 3D 44 DE 02 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x000002DE443EFAC0, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{281} normal block at 0x000002DE443F6570, 16 bytes long.
 Data: <`&#244;=D&#222;           > 60 F4 3D 44 DE 02 00 00 00 00 00 00 00 00 00 00 
{279} normal block at 0x000002DE443F68E0, 16 bytes long.
 Data: <8&#244;=D&#222;           > 38 F4 3D 44 DE 02 00 00 00 00 00 00 00 00 00 00 
{278} normal block at 0x000002DE443F6890, 16 bytes long.
 Data: < &#244;=D&#222;           > 10 F4 3D 44 DE 02 00 00 00 00 00 00 00 00 00 00 
{277} normal block at 0x000002DE443F62F0, 16 bytes long.
 Data: <&#232;&#243;=D&#222;           > E8 F3 3D 44 DE 02 00 00 00 00 00 00 00 00 00 00 
{276} normal block at 0x000002DE443F6020, 16 bytes long.
 Data: <&#192;&#243;=D&#222;           > C0 F3 3D 44 DE 02 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x000002DE443F6A20, 16 bytes long.
 Data: < &#243;=D&#222;           > 98 F3 3D 44 DE 02 00 00 00 00 00 00 00 00 00 00 
{274} normal block at 0x000002DE443EF880, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{273} normal block at 0x000002DE443F6930, 16 bytes long.
 Data: <p&#243;=D&#222;           > 70 F3 3D 44 DE 02 00 00 00 00 00 00 00 00 00 00 
{272} normal block at 0x000002DE443DF370, 320 bytes long.
 Data: <0i?D&#222;    &#248;>D&#222;   > 30 69 3F 44 DE 02 00 00 80 F8 3E 44 DE 02 00 00 
{271} normal block at 0x000002DE443F62A0, 16 bytes long.
 Data: <&#176;n?D&#222;           > B0 6E 3F 44 DE 02 00 00 00 00 00 00 00 00 00 00 
{270} normal block at 0x000002DE443F69D0, 16 bytes long.
 Data: < n?D&#222;           > 88 6E 3F 44 DE 02 00 00 00 00 00 00 00 00 00 00 
{269} normal block at 0x000002DE443F0000, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{268} normal block at 0x000002DE443F6840, 16 bytes long.
 Data: <`n?D&#222;           > 60 6E 3F 44 DE 02 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x000002DE443EF7C0, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{266} normal block at 0x000002DE443F6520, 16 bytes long.
 Data: <&#168;m?D&#222;           > A8 6D 3F 44 DE 02 00 00 00 00 00 00 00 00 00 00 
{265} normal block at 0x000002DE443F6700, 16 bytes long.
 Data: < m?D&#222;           > 80 6D 3F 44 DE 02 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x000002DE443F6200, 16 bytes long.
 Data: <Xm?D&#222;           > 58 6D 3F 44 DE 02 00 00 00 00 00 00 00 00 00 00 
{263} normal block at 0x000002DE443F5CB0, 16 bytes long.
 Data: <0m?D&#222;           > 30 6D 3F 44 DE 02 00 00 00 00 00 00 00 00 00 00 
{262} normal block at 0x000002DE443F64D0, 16 bytes long.
 Data: < m?D&#222;           > 08 6D 3F 44 DE 02 00 00 00 00 00 00 00 00 00 00 
{261} normal block at 0x000002DE443F67F0, 16 bytes long.
 Data: <&#224;l?D&#222;           > E0 6C 3F 44 DE 02 00 00 00 00 00 00 00 00 00 00 
{259} normal block at 0x000002DE443F6110, 16 bytes long.
 Data: < U?D&#222;           > 00 55 3F 44 DE 02 00 00 00 00 00 00 00 00 00 00 
{258} normal block at 0x000002DE443F5500, 40 bytes long.
 Data: < a?D&#222;   0m F&#222;   > 10 61 3F 44 DE 02 00 00 30 6D 10 46 DE 02 00 00 
{257} normal block at 0x000002DE443F6980, 16 bytes long.
 Data: <&#192;l?D&#222;           > C0 6C 3F 44 DE 02 00 00 00 00 00 00 00 00 00 00 
{256} normal block at 0x000002DE443F61B0, 16 bytes long.
 Data: < l?D&#222;           > 98 6C 3F 44 DE 02 00 00 00 00 00 00 00 00 00 00 
{255} normal block at 0x000002DE443EFD60, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{254} normal block at 0x000002DE443F6610, 16 bytes long.
 Data: <pl?D&#222;           > 70 6C 3F 44 DE 02 00 00 00 00 00 00 00 00 00 00 
{253} normal block at 0x000002DE443F6C70, 992 bytes long.
 Data: < f?D&#222;   `&#253;>D&#222;   > 10 66 3F 44 DE 02 00 00 60 FD 3E 44 DE 02 00 00 
{89} normal block at 0x000002DE443F0120, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{88} normal block at 0x000002DE443ED7E0, 16 bytes long.
 Data: < &#225;=D&#222;           > 20 E1 3D 44 DE 02 00 00 00 00 00 00 00 00 00 00 
{87} normal block at 0x000002DE443DE120, 40 bytes long.
 Data: <&#224;&#215;>D&#222;     ?D&#222;   > E0 D7 3E 44 DE 02 00 00 20 01 3F 44 DE 02 00 00 
{66} normal block at 0x000002DE443EE280, 16 bytes long.
 Data: < &#234;]g&#247;           > 80 EA 5D 67 F7 7F 00 00 00 00 00 00 00 00 00 00 
{65} normal block at 0x000002DE443EDD30, 16 bytes long.
 Data: <@&#233;]g&#247;           > 40 E9 5D 67 F7 7F 00 00 00 00 00 00 00 00 00 00 
{64} normal block at 0x000002DE443ED970, 16 bytes long.
 Data: <&#248;WZg&#247;           > F8 57 5A 67 F7 7F 00 00 00 00 00 00 00 00 00 00 
{63} normal block at 0x000002DE443ED880, 16 bytes long.
 Data: <&#216;WZg&#247;           > D8 57 5A 67 F7 7F 00 00 00 00 00 00 00 00 00 00 
{62} normal block at 0x000002DE443EDCE0, 16 bytes long.
 Data: <P Zg&#247;           > 50 04 5A 67 F7 7F 00 00 00 00 00 00 00 00 00 00 
{61} normal block at 0x000002DE443EE140, 16 bytes long.
 Data: <0 Zg&#247;           > 30 04 5A 67 F7 7F 00 00 00 00 00 00 00 00 00 00 
{60} normal block at 0x000002DE443EE230, 16 bytes long.
 Data: <&#224; Zg&#247;           > E0 02 5A 67 F7 7F 00 00 00 00 00 00 00 00 00 00 
{59} normal block at 0x000002DE443EDA60, 16 bytes long.
 Data: <  Zg&#247;           > 10 04 5A 67 F7 7F 00 00 00 00 00 00 00 00 00 00 
{58} normal block at 0x000002DE443ED790, 16 bytes long.
 Data: <p Zg&#247;           > 70 04 5A 67 F7 7F 00 00 00 00 00 00 00 00 00 00 
{57} normal block at 0x000002DE443EDDD0, 16 bytes long.
 Data: < &#192;Xg&#247;           > 18 C0 58 67 F7 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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