Task 38620994

Name p38_2_A02_A08_r0_3-QUICO_ATM_GAFF2_NAGL_p38_2-4-6-RND5888_0
Workunit 31572077
Created 19 Apr 2026, 14:34:02 UTC
Sent 19 Apr 2026, 14:34:07 UTC
Report deadline 24 Apr 2026, 14:34:07 UTC
Received 20 Apr 2026, 9:06:13 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 632099
Run time 4 hours 24 min 36 sec
CPU time 4 hours 24 min 36 sec
Validate state Valid
Credit 750,000.00
Device peak FLOPS 30,034.22 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 714.63 MB
Peak swap size 12.93 GB
Peak disk usage 3.08 GB

Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
20:49:26 (20860): wrapper (7.9.26016): starting
20:49:26 (20860): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A02_A08_0.pdb
QB_A02_A08_0.xml
QB_A02_A08.inpcrd
QB_A02_A08_input.yaml
QB_A02_A08.pdb
QB_A02_A08.prmtop
QB_A02_A08_sys.xml
run.bat
run.sh
20:49:28 (20860): Library/usr/bin/tar.exe exited; CPU time 0.000000
20:49:28 (20860): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\2\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\2\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
00:57:34 (20860): C:/Windows/system32/cmd.exe exited; CPU time 15876.453125
00:57:34 (20860): called boinc_finish(0)
0 bytes in 0 Free Blocks.
576 bytes in 8 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 188581637 bytes.
Dumping objects ->
{3835332} normal block at 0x000002D6129B0A00, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835321} normal block at 0x000002D6129B0B50, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835310} normal block at 0x000002D6129B1100, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{3835299} normal block at 0x000002D6129B16B0, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835288} normal block at 0x000002D6129B1640, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{3835257} normal block at 0x000002D612A5B1B0, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835246} normal block at 0x000002D612A52B00, 160 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
..\api\boinc_api.cpp(309) : {3835243} normal block at 0x000002D610E98030, 8 bytes long.
 Data: <  &#225; &#214;   > 00 00 E1 10 D6 02 00 00 
{3834597} normal block at 0x000002D612A52400, 160 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
{3833967} normal block at 0x000002D610E97680, 8 bytes long.
 Data: <&#176; &#165; &#214;   > B0 0C A5 12 D6 02 00 00 
..\zip\boinc_zip.cpp(122) : {315} normal block at 0x000002D610EA1120, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{300} normal block at 0x000002D610E9D910, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{299} normal block at 0x000002D610EA2110, 16 bytes long.
 Data: <X7&#234; &#214;           > 58 37 EA 10 D6 02 00 00 00 00 00 00 00 00 00 00 
{298} normal block at 0x000002D610EA2610, 16 bytes long.
 Data: <07&#234; &#214;           > 30 37 EA 10 D6 02 00 00 00 00 00 00 00 00 00 00 
{297} normal block at 0x000002D610E9DE60, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{296} normal block at 0x000002D610EA20C0, 16 bytes long.
 Data: < 7&#234; &#214;           > 08 37 EA 10 D6 02 00 00 00 00 00 00 00 00 00 00 
{295} normal block at 0x000002D610EA2070, 16 bytes long.
 Data: <&#224;6&#234; &#214;           > E0 36 EA 10 D6 02 00 00 00 00 00 00 00 00 00 00 
{294} normal block at 0x000002D610EA2520, 16 bytes long.
 Data: <&#184;6&#234; &#214;           > B8 36 EA 10 D6 02 00 00 00 00 00 00 00 00 00 00 
{293} normal block at 0x000002D610EA2DE0, 16 bytes long.
 Data: < 6&#234; &#214;           > 90 36 EA 10 D6 02 00 00 00 00 00 00 00 00 00 00 
{292} normal block at 0x000002D610E9C380, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{291} normal block at 0x000002D610EA2660, 16 bytes long.
 Data: < &#181;&#232; &#214;           > 88 B5 E8 10 D6 02 00 00 00 00 00 00 00 00 00 00 
{290} normal block at 0x000002D610E9E7C0, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{289} normal block at 0x000002D610EA2D90, 16 bytes long.
 Data: <`&#181;&#232; &#214;           > 60 B5 E8 10 D6 02 00 00 00 00 00 00 00 00 00 00 
{287} normal block at 0x000002D610EA2D40, 16 bytes long.
 Data: <8&#181;&#232; &#214;           > 38 B5 E8 10 D6 02 00 00 00 00 00 00 00 00 00 00 
{286} normal block at 0x000002D610EA2CF0, 16 bytes long.
 Data: < &#181;&#232; &#214;           > 10 B5 E8 10 D6 02 00 00 00 00 00 00 00 00 00 00 
{285} normal block at 0x000002D610EA2750, 16 bytes long.
 Data: <&#232;&#180;&#232; &#214;           > E8 B4 E8 10 D6 02 00 00 00 00 00 00 00 00 00 00 
{284} normal block at 0x000002D610EA2C50, 16 bytes long.
 Data: <&#192;&#180;&#232; &#214;           > C0 B4 E8 10 D6 02 00 00 00 00 00 00 00 00 00 00 
{283} normal block at 0x000002D610EA2A70, 16 bytes long.
 Data: < &#180;&#232; &#214;           > 98 B4 E8 10 D6 02 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x000002D610E9E2E0, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{281} normal block at 0x000002D610EA2A20, 16 bytes long.
 Data: <p&#180;&#232; &#214;           > 70 B4 E8 10 D6 02 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x000002D610E8B470, 320 bytes long.
 Data: < *&#234; &#214;   &#224;&#226;&#233; &#214;   > 20 2A EA 10 D6 02 00 00 E0 E2 E9 10 D6 02 00 00 
{279} normal block at 0x000002D610EA24D0, 16 bytes long.
 Data: <p6&#234; &#214;           > 70 36 EA 10 D6 02 00 00 00 00 00 00 00 00 00 00 
{278} normal block at 0x000002D610EA25C0, 16 bytes long.
 Data: <H6&#234; &#214;           > 48 36 EA 10 D6 02 00 00 00 00 00 00 00 00 00 00 
{277} normal block at 0x000002D610E9E1C0, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{276} normal block at 0x000002D610EA27F0, 16 bytes long.
 Data: < 6&#234; &#214;           > 20 36 EA 10 D6 02 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x000002D610E9E160, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{274} normal block at 0x000002D610EA2CA0, 16 bytes long.
 Data: <h5&#234; &#214;           > 68 35 EA 10 D6 02 00 00 00 00 00 00 00 00 00 00 
{273} normal block at 0x000002D610EA2F20, 16 bytes long.
 Data: <@5&#234; &#214;           > 40 35 EA 10 D6 02 00 00 00 00 00 00 00 00 00 00 
{272} normal block at 0x000002D610EA28E0, 16 bytes long.
 Data: < 5&#234; &#214;           > 18 35 EA 10 D6 02 00 00 00 00 00 00 00 00 00 00 
{271} normal block at 0x000002D610EA2B10, 16 bytes long.
 Data: <&#240;4&#234; &#214;           > F0 34 EA 10 D6 02 00 00 00 00 00 00 00 00 00 00 
{270} normal block at 0x000002D610EA29D0, 16 bytes long.
 Data: <&#200;4&#234; &#214;           > C8 34 EA 10 D6 02 00 00 00 00 00 00 00 00 00 00 
{269} normal block at 0x000002D610EA2BB0, 16 bytes long.
 Data: <&#160;4&#234; &#214;           > A0 34 EA 10 D6 02 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x000002D610EA2480, 16 bytes long.
 Data: <0&#194;&#233; &#214;           > 30 C2 E9 10 D6 02 00 00 00 00 00 00 00 00 00 00 
{266} normal block at 0x000002D610E9C230, 40 bytes long.
 Data: < $&#234; &#214;   &#176;&#177;&#165; &#214;   > 80 24 EA 10 D6 02 00 00 B0 B1 A5 12 D6 02 00 00 
{265} normal block at 0x000002D610EA2250, 16 bytes long.
 Data: < 4&#234; &#214;           > 80 34 EA 10 D6 02 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x000002D610EA2C00, 16 bytes long.
 Data: <X4&#234; &#214;           > 58 34 EA 10 D6 02 00 00 00 00 00 00 00 00 00 00 
{263} normal block at 0x000002D610E9DDA0, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{262} normal block at 0x000002D610EA2B60, 16 bytes long.
 Data: <04&#234; &#214;           > 30 34 EA 10 D6 02 00 00 00 00 00 00 00 00 00 00 
{261} normal block at 0x000002D610EA3430, 992 bytes long.
 Data: <`+&#234; &#214;   &#160;&#221;&#233; &#214;   > 60 2B EA 10 D6 02 00 00 A0 DD E9 10 D6 02 00 00 
{97} normal block at 0x000002D610E9E880, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{96} normal block at 0x000002D610E979F0, 16 bytes long.
 Data: <@&#197;&#233; &#214;           > 40 C5 E9 10 D6 02 00 00 00 00 00 00 00 00 00 00 
{95} normal block at 0x000002D610E9C540, 40 bytes long.
 Data: <&#240;y&#233; &#214;    &#232;&#233; &#214;   > F0 79 E9 10 D6 02 00 00 80 E8 E9 10 D6 02 00 00 
{74} normal block at 0x000002D610E983A0, 16 bytes long.
 Data: < &#234;&#178;]&#247;           > 80 EA B2 5D F7 7F 00 00 00 00 00 00 00 00 00 00 
{73} normal block at 0x000002D610E98260, 16 bytes long.
 Data: <@&#233;&#178;]&#247;           > 40 E9 B2 5D F7 7F 00 00 00 00 00 00 00 00 00 00 
{72} normal block at 0x000002D610E98300, 16 bytes long.
 Data: <&#248;W&#175;]&#247;           > F8 57 AF 5D F7 7F 00 00 00 00 00 00 00 00 00 00 
{71} normal block at 0x000002D610E97D60, 16 bytes long.
 Data: <&#216;W&#175;]&#247;           > D8 57 AF 5D F7 7F 00 00 00 00 00 00 00 00 00 00 
{70} normal block at 0x000002D610E98350, 16 bytes long.
 Data: <P &#175;]&#247;           > 50 04 AF 5D F7 7F 00 00 00 00 00 00 00 00 00 00 
{69} normal block at 0x000002D610E97FE0, 16 bytes long.
 Data: <0 &#175;]&#247;           > 30 04 AF 5D F7 7F 00 00 00 00 00 00 00 00 00 00 
{68} normal block at 0x000002D610E98120, 16 bytes long.
 Data: <&#224; &#175;]&#247;           > E0 02 AF 5D F7 7F 00 00 00 00 00 00 00 00 00 00 
{67} normal block at 0x000002D610E98210, 16 bytes long.
 Data: <  &#175;]&#247;           > 10 04 AF 5D F7 7F 00 00 00 00 00 00 00 00 00 00 
{66} normal block at 0x000002D610E97590, 16 bytes long.
 Data: <p &#175;]&#247;           > 70 04 AF 5D F7 7F 00 00 00 00 00 00 00 00 00 00 
{65} normal block at 0x000002D610E97D10, 16 bytes long.
 Data: < &#192;&#173;]&#247;           > 18 C0 AD 5D F7 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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