Task 38619661

Name HIF2A_2_A39_A30_r0_4-QUICO_ATM_GAFF2_NAGL_hif2a_2-2-6-RND5413_1
Workunit 31570335
Created 19 Apr 2026, 0:21:55 UTC
Sent 19 Apr 2026, 0:22:02 UTC
Report deadline 24 Apr 2026, 0:22:02 UTC
Received 19 Apr 2026, 2:53:25 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 648183
Run time 2 hours 26 min 44 sec
CPU time 2 hours 26 min 44 sec
Validate state Valid
Credit 750,000.00
Device peak FLOPS 22,863.35 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 457.82 MB
Peak swap size 6.54 GB
Peak disk usage 2.90 GB

Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
20:29:06 (24788): wrapper (7.9.26016): starting
20:29:06 (24788): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A39_A30_0.pdb
QB_A39_A30_0.xml
QB_A39_A30.inpcrd
QB_A39_A30_input.yaml
QB_A39_A30.pdb
QB_A39_A30.prmtop
QB_A39_A30_sys.xml
run.bat
run.sh
20:29:07 (24788): Library/usr/bin/tar.exe exited; CPU time 0.015625
20:29:07 (24788): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
22:53:06 (24788): C:/Windows/system32/cmd.exe exited; CPU time 8804.609375
22:53:06 (24788): called boinc_finish(0)
0 bytes in 0 Free Blocks.
256 bytes in 6 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 140471481 bytes.
Dumping objects ->
{3835190} normal block at 0x000002B9E9B59180, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835179} normal block at 0x000002B9E9B58F50, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835168} normal block at 0x000002B9E9B59030, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{3835157} normal block at 0x000002B9E9B590A0, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835146} normal block at 0x000002B9E9B59810, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{3835115} normal block at 0x000002B9EB839290, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
..\api\boinc_api.cpp(309) : {3835102} normal block at 0x000002B9E9B2D450, 8 bytes long.
 Data: <   &#234;&#185;   > 00 00 01 EA B9 02 00 00 
{3833963} normal block at 0x000002B9E9B2D810, 8 bytes long.
 Data: < &#216;&#177;&#233;&#185;   > 20 D8 B1 E9 B9 02 00 00 
..\zip\boinc_zip.cpp(122) : {313} normal block at 0x000002B9E9B20CF0, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{298} normal block at 0x000002B9E9B21DC0, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{297} normal block at 0x000002B9E9B36110, 16 bytes long.
 Data: <&#232;j&#179;&#233;&#185;           > E8 6A B3 E9 B9 02 00 00 00 00 00 00 00 00 00 00 
{296} normal block at 0x000002B9E9B360C0, 16 bytes long.
 Data: <&#192;j&#179;&#233;&#185;           > C0 6A B3 E9 B9 02 00 00 00 00 00 00 00 00 00 00 
{295} normal block at 0x000002B9E9B2F5F0, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{294} normal block at 0x000002B9E9B36570, 16 bytes long.
 Data: < j&#179;&#233;&#185;           > 98 6A B3 E9 B9 02 00 00 00 00 00 00 00 00 00 00 
{293} normal block at 0x000002B9E9B36070, 16 bytes long.
 Data: <pj&#179;&#233;&#185;           > 70 6A B3 E9 B9 02 00 00 00 00 00 00 00 00 00 00 
{292} normal block at 0x000002B9E9B35F80, 16 bytes long.
 Data: <Hj&#179;&#233;&#185;           > 48 6A B3 E9 B9 02 00 00 00 00 00 00 00 00 00 00 
{291} normal block at 0x000002B9E9B36480, 16 bytes long.
 Data: < j&#179;&#233;&#185;           > 20 6A B3 E9 B9 02 00 00 00 00 00 00 00 00 00 00 
{290} normal block at 0x000002B9E9B31270, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{289} normal block at 0x000002B9E9B35C60, 16 bytes long.
 Data: <&#216;&#238;&#177;&#233;&#185;           > D8 EE B1 E9 B9 02 00 00 00 00 00 00 00 00 00 00 
{288} normal block at 0x000002B9E9B2FCB0, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{287} normal block at 0x000002B9E9B35F30, 16 bytes long.
 Data: <&#176;&#238;&#177;&#233;&#185;           > B0 EE B1 E9 B9 02 00 00 00 00 00 00 00 00 00 00 
{285} normal block at 0x000002B9E9B35FD0, 16 bytes long.
 Data: < &#238;&#177;&#233;&#185;           > 88 EE B1 E9 B9 02 00 00 00 00 00 00 00 00 00 00 
{284} normal block at 0x000002B9E9B35EE0, 16 bytes long.
 Data: <`&#238;&#177;&#233;&#185;           > 60 EE B1 E9 B9 02 00 00 00 00 00 00 00 00 00 00 
{283} normal block at 0x000002B9E9B35BC0, 16 bytes long.
 Data: <8&#238;&#177;&#233;&#185;           > 38 EE B1 E9 B9 02 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x000002B9E9B36700, 16 bytes long.
 Data: < &#238;&#177;&#233;&#185;           > 10 EE B1 E9 B9 02 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x000002B9E9B366B0, 16 bytes long.
 Data: <&#232;&#237;&#177;&#233;&#185;           > E8 ED B1 E9 B9 02 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x000002B9E9B2F890, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{279} normal block at 0x000002B9E9B35E90, 16 bytes long.
 Data: <&#192;&#237;&#177;&#233;&#185;           > C0 ED B1 E9 B9 02 00 00 00 00 00 00 00 00 00 00 
{278} normal block at 0x000002B9E9B1EDC0, 320 bytes long.
 Data: < ^&#179;&#233;&#185;    &#248;&#178;&#233;&#185;   > 90 5E B3 E9 B9 02 00 00 90 F8 B2 E9 B9 02 00 00 
{277} normal block at 0x000002B9E9B35990, 16 bytes long.
 Data: < j&#179;&#233;&#185;           > 00 6A B3 E9 B9 02 00 00 00 00 00 00 00 00 00 00 
{276} normal block at 0x000002B9E9B358F0, 16 bytes long.
 Data: <&#216;i&#179;&#233;&#185;           > D8 69 B3 E9 B9 02 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x000002B9E9B30370, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{274} normal block at 0x000002B9E9B36520, 16 bytes long.
 Data: <&#176;i&#179;&#233;&#185;           > B0 69 B3 E9 B9 02 00 00 00 00 00 00 00 00 00 00 
{273} normal block at 0x000002B9E9B302B0, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{272} normal block at 0x000002B9E9B36390, 16 bytes long.
 Data: <&#248;h&#179;&#233;&#185;           > F8 68 B3 E9 B9 02 00 00 00 00 00 00 00 00 00 00 
{271} normal block at 0x000002B9E9B35800, 16 bytes long.
 Data: <&#208;h&#179;&#233;&#185;           > D0 68 B3 E9 B9 02 00 00 00 00 00 00 00 00 00 00 
{270} normal block at 0x000002B9E9B36020, 16 bytes long.
 Data: <&#168;h&#179;&#233;&#185;           > A8 68 B3 E9 B9 02 00 00 00 00 00 00 00 00 00 00 
{269} normal block at 0x000002B9E9B364D0, 16 bytes long.
 Data: < h&#179;&#233;&#185;           > 80 68 B3 E9 B9 02 00 00 00 00 00 00 00 00 00 00 
{268} normal block at 0x000002B9E9B35850, 16 bytes long.
 Data: <Xh&#179;&#233;&#185;           > 58 68 B3 E9 B9 02 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x000002B9E9B359E0, 16 bytes long.
 Data: <0h&#179;&#233;&#185;           > 30 68 B3 E9 B9 02 00 00 00 00 00 00 00 00 00 00 
{265} normal block at 0x000002B9E9B35B20, 16 bytes long.
 Data: <&#192; &#179;&#233;&#185;           > C0 13 B3 E9 B9 02 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x000002B9E9B313C0, 40 bytes long.
 Data: < [&#179;&#233;&#185;    &#146;&#131;&#235;&#185;   > 20 5B B3 E9 B9 02 00 00 90 92 83 EB B9 02 00 00 
{263} normal block at 0x000002B9E9B36250, 16 bytes long.
 Data: < h&#179;&#233;&#185;           > 10 68 B3 E9 B9 02 00 00 00 00 00 00 00 00 00 00 
{262} normal block at 0x000002B9E9B358A0, 16 bytes long.
 Data: <&#232;g&#179;&#233;&#185;           > E8 67 B3 E9 B9 02 00 00 00 00 00 00 00 00 00 00 
{261} normal block at 0x000002B9E9B2FDD0, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{260} normal block at 0x000002B9E9B35940, 16 bytes long.
 Data: <&#192;g&#179;&#233;&#185;           > C0 67 B3 E9 B9 02 00 00 00 00 00 00 00 00 00 00 
{259} normal block at 0x000002B9E9B367C0, 992 bytes long.
 Data: <@Y&#179;&#233;&#185;   &#208;&#253;&#178;&#233;&#185;   > 40 59 B3 E9 B9 02 00 00 D0 FD B2 E9 B9 02 00 00 
{95} normal block at 0x000002B9E9B301F0, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{94} normal block at 0x000002B9E9B2D9A0, 16 bytes long.
 Data: <&#208; &#179;&#233;&#185;           > D0 0F B3 E9 B9 02 00 00 00 00 00 00 00 00 00 00 
{93} normal block at 0x000002B9E9B30FD0, 40 bytes long.
 Data: <&#160;&#217;&#178;&#233;&#185;   &#240; &#179;&#233;&#185;   > A0 D9 B2 E9 B9 02 00 00 F0 01 B3 E9 B9 02 00 00 
{72} normal block at 0x000002B9E9B2DC20, 16 bytes long.
 Data: < &#234; &#132;&#247;           > 80 EA 1F 84 F7 7F 00 00 00 00 00 00 00 00 00 00 
{71} normal block at 0x000002B9E9B2D1D0, 16 bytes long.
 Data: <@&#233; &#132;&#247;           > 40 E9 1F 84 F7 7F 00 00 00 00 00 00 00 00 00 00 
{70} normal block at 0x000002B9E9B2DE00, 16 bytes long.
 Data: <&#248;W &#132;&#247;           > F8 57 1C 84 F7 7F 00 00 00 00 00 00 00 00 00 00 
{69} normal block at 0x000002B9E9B2DF40, 16 bytes long.
 Data: <&#216;W &#132;&#247;           > D8 57 1C 84 F7 7F 00 00 00 00 00 00 00 00 00 00 
{68} normal block at 0x000002B9E9B2D310, 16 bytes long.
 Data: <P  &#132;&#247;           > 50 04 1C 84 F7 7F 00 00 00 00 00 00 00 00 00 00 
{67} normal block at 0x000002B9E9B2D270, 16 bytes long.
 Data: <0  &#132;&#247;           > 30 04 1C 84 F7 7F 00 00 00 00 00 00 00 00 00 00 
{66} normal block at 0x000002B9E9B2DCC0, 16 bytes long.
 Data: <&#224;  &#132;&#247;           > E0 02 1C 84 F7 7F 00 00 00 00 00 00 00 00 00 00 
{65} normal block at 0x000002B9E9B2D900, 16 bytes long.
 Data: <   &#132;&#247;           > 10 04 1C 84 F7 7F 00 00 00 00 00 00 00 00 00 00 
{64} normal block at 0x000002B9E9B2D220, 16 bytes long.
 Data: <p  &#132;&#247;           > 70 04 1C 84 F7 7F 00 00 00 00 00 00 00 00 00 00 
{63} normal block at 0x000002B9E9B2D770, 16 bytes long.
 Data: < &#192; &#132;&#247;           > 18 C0 1A 84 F7 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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