Task 38619391

Name HIF2A_2_A39_A21_r0_2-QUICO_ATM_GAFF2_NAGL_hif2a_2-4-6-RND1597_0
Workunit 31570761
Created 18 Apr 2026, 21:32:27 UTC
Sent 18 Apr 2026, 21:32:32 UTC
Report deadline 23 Apr 2026, 21:32:32 UTC
Received 18 Apr 2026, 23:49:22 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 649774
Run time 2 hours 15 min 28 sec
CPU time 2 hours 11 min 1 sec
Validate state Valid
Credit 750,000.00
Device peak FLOPS 20,852.78 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 462.70 MB
Peak swap size 6.51 GB
Peak disk usage 2.90 GB

Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
15:33:22 (3764): wrapper (7.9.26016): starting
15:33:22 (3764): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A39_A21_0.pdb
QB_A39_A21_0.xml
QB_A39_A21.inpcrd
QB_A39_A21_input.yaml
QB_A39_A21.pdb
QB_A39_A21.prmtop
QB_A39_A21_sys.xml
run.bat
run.sh
15:33:23 (3764): Library/usr/bin/tar.exe exited; CPU time 0.000000
15:33:23 (3764): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
17:48:53 (3764): C:/Windows/system32/cmd.exe exited; CPU time 7861.359375
17:48:53 (3764): called boinc_finish(0)
0 bytes in 0 Free Blocks.
460 bytes in 8 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 106934717 bytes.
Dumping objects ->
{3835592} normal block at 0x0000024CB8E04670, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835581} normal block at 0x0000024CB6FE52D0, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835570} normal block at 0x0000024CB6FE51F0, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{3835559} normal block at 0x0000024CB6FE5110, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835548} normal block at 0x0000024CB6FE5180, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{3835517} normal block at 0x0000024CB8D76690, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835506} normal block at 0x0000024CB8D8F210, 102 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
..\api\boinc_api.cpp(309) : {3835503} normal block at 0x0000024CB6FDDCC0, 8 bytes long.
 Data: <  L&#183;L   > 00 00 4C B7 4C 02 00 00 
{3834709} normal block at 0x0000024CB8D8F420, 102 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
{3833957} normal block at 0x0000024CB6FDD860, 8 bytes long.
 Data: <@&#217;&#252;&#182;L   > 40 D9 FC B6 4C 02 00 00 
..\zip\boinc_zip.cpp(122) : {310} normal block at 0x0000024CB6FD0A80, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{295} normal block at 0x0000024CB6FD1B20, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{294} normal block at 0x0000024CB6FE6440, 16 bytes long.
 Data: <&#184;n&#254;&#182;L           > B8 6E FE B6 4C 02 00 00 00 00 00 00 00 00 00 00 
{293} normal block at 0x0000024CB6FE66C0, 16 bytes long.
 Data: < n&#254;&#182;L           > 90 6E FE B6 4C 02 00 00 00 00 00 00 00 00 00 00 
{292} normal block at 0x0000024CB6FE02F0, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{291} normal block at 0x0000024CB6FE63F0, 16 bytes long.
 Data: <hn&#254;&#182;L           > 68 6E FE B6 4C 02 00 00 00 00 00 00 00 00 00 00 
{290} normal block at 0x0000024CB6FE6170, 16 bytes long.
 Data: <@n&#254;&#182;L           > 40 6E FE B6 4C 02 00 00 00 00 00 00 00 00 00 00 
{289} normal block at 0x0000024CB6FE60D0, 16 bytes long.
 Data: < n&#254;&#182;L           > 18 6E FE B6 4C 02 00 00 00 00 00 00 00 00 00 00 
{288} normal block at 0x0000024CB6FE6AD0, 16 bytes long.
 Data: <&#240;m&#254;&#182;L           > F0 6D FE B6 4C 02 00 00 00 00 00 00 00 00 00 00 
{287} normal block at 0x0000024CB6FE5420, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{286} normal block at 0x0000024CB6FE6080, 16 bytes long.
 Data: <h&#244;&#252;&#182;L           > 68 F4 FC B6 4C 02 00 00 00 00 00 00 00 00 00 00 
{285} normal block at 0x0000024CB6FDF7B0, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{284} normal block at 0x0000024CB6FE6530, 16 bytes long.
 Data: <@&#244;&#252;&#182;L           > 40 F4 FC B6 4C 02 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x0000024CB6FE63A0, 16 bytes long.
 Data: < &#244;&#252;&#182;L           > 18 F4 FC B6 4C 02 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x0000024CB6FE6350, 16 bytes long.
 Data: <&#240;&#243;&#252;&#182;L           > F0 F3 FC B6 4C 02 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x0000024CB6FE69E0, 16 bytes long.
 Data: <&#200;&#243;&#252;&#182;L           > C8 F3 FC B6 4C 02 00 00 00 00 00 00 00 00 00 00 
{279} normal block at 0x0000024CB6FE5CC0, 16 bytes long.
 Data: <&#160;&#243;&#252;&#182;L           > A0 F3 FC B6 4C 02 00 00 00 00 00 00 00 00 00 00 
{278} normal block at 0x0000024CB6FE5F40, 16 bytes long.
 Data: <x&#243;&#252;&#182;L           > 78 F3 FC B6 4C 02 00 00 00 00 00 00 00 00 00 00 
{277} normal block at 0x0000024CB6FDFF30, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{276} normal block at 0x0000024CB6FE6A80, 16 bytes long.
 Data: <P&#243;&#252;&#182;L           > 50 F3 FC B6 4C 02 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x0000024CB6FCF350, 320 bytes long.
 Data: < j&#254;&#182;L   0&#255;&#253;&#182;L   > 80 6A FE B6 4C 02 00 00 30 FF FD B6 4C 02 00 00 
{274} normal block at 0x0000024CB6FE6120, 16 bytes long.
 Data: <&#208;m&#254;&#182;L           > D0 6D FE B6 4C 02 00 00 00 00 00 00 00 00 00 00 
{273} normal block at 0x0000024CB6FE6210, 16 bytes long.
 Data: <&#168;m&#254;&#182;L           > A8 6D FE B6 4C 02 00 00 00 00 00 00 00 00 00 00 
{272} normal block at 0x0000024CB6FE0050, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{271} normal block at 0x0000024CB6FE61C0, 16 bytes long.
 Data: < m&#254;&#182;L           > 80 6D FE B6 4C 02 00 00 00 00 00 00 00 00 00 00 
{270} normal block at 0x0000024CB6FE01D0, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{269} normal block at 0x0000024CB6FE5EF0, 16 bytes long.
 Data: <&#200;l&#254;&#182;L           > C8 6C FE B6 4C 02 00 00 00 00 00 00 00 00 00 00 
{268} normal block at 0x0000024CB6FE5E50, 16 bytes long.
 Data: <&#160;l&#254;&#182;L           > A0 6C FE B6 4C 02 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x0000024CB6FE6260, 16 bytes long.
 Data: <xl&#254;&#182;L           > 78 6C FE B6 4C 02 00 00 00 00 00 00 00 00 00 00 
{266} normal block at 0x0000024CB6FE5E00, 16 bytes long.
 Data: <Pl&#254;&#182;L           > 50 6C FE B6 4C 02 00 00 00 00 00 00 00 00 00 00 
{265} normal block at 0x0000024CB6FE62B0, 16 bytes long.
 Data: <(l&#254;&#182;L           > 28 6C FE B6 4C 02 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x0000024CB6FE5EA0, 16 bytes long.
 Data: < l&#254;&#182;L           > 00 6C FE B6 4C 02 00 00 00 00 00 00 00 00 00 00 
{262} normal block at 0x0000024CB6FE5F90, 16 bytes long.
 Data: <&#224;U&#254;&#182;L           > E0 55 FE B6 4C 02 00 00 00 00 00 00 00 00 00 00 
{261} normal block at 0x0000024CB6FE55E0, 40 bytes long.
 Data: < _&#254;&#182;L    f&#215;&#184;L   > 90 5F FE B6 4C 02 00 00 90 66 D7 B8 4C 02 00 00 
{260} normal block at 0x0000024CB6FE6850, 16 bytes long.
 Data: <&#224;k&#254;&#182;L           > E0 6B FE B6 4C 02 00 00 00 00 00 00 00 00 00 00 
{259} normal block at 0x0000024CB6FE5FE0, 16 bytes long.
 Data: <&#184;k&#254;&#182;L           > B8 6B FE B6 4C 02 00 00 00 00 00 00 00 00 00 00 
{258} normal block at 0x0000024CB6FDFC90, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{257} normal block at 0x0000024CB6FE6030, 16 bytes long.
 Data: < k&#254;&#182;L           > 90 6B FE B6 4C 02 00 00 00 00 00 00 00 00 00 00 
{256} normal block at 0x0000024CB6FE6B90, 992 bytes long.
 Data: <0`&#254;&#182;L    &#252;&#253;&#182;L   > 30 60 FE B6 4C 02 00 00 90 FC FD B6 4C 02 00 00 
{92} normal block at 0x0000024CB6FDFC30, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{91} normal block at 0x0000024CB6FDDD10, 16 bytes long.
 Data: <&#176;&#200;&#252;&#182;L           > B0 C8 FC B6 4C 02 00 00 00 00 00 00 00 00 00 00 
{90} normal block at 0x0000024CB6FCC8B0, 40 bytes long.
 Data: < &#221;&#253;&#182;L   0&#252;&#253;&#182;L   > 10 DD FD B6 4C 02 00 00 30 FC FD B6 4C 02 00 00 
{69} normal block at 0x0000024CB6FDDAE0, 16 bytes long.
 Data: < &#234;&#233; &#246;           > 80 EA E9 11 F6 7F 00 00 00 00 00 00 00 00 00 00 
{68} normal block at 0x0000024CB6FDE260, 16 bytes long.
 Data: <@&#233;&#233; &#246;           > 40 E9 E9 11 F6 7F 00 00 00 00 00 00 00 00 00 00 
{67} normal block at 0x0000024CB6FDDF40, 16 bytes long.
 Data: <&#248;W&#230; &#246;           > F8 57 E6 11 F6 7F 00 00 00 00 00 00 00 00 00 00 
{66} normal block at 0x0000024CB6FDD4A0, 16 bytes long.
 Data: <&#216;W&#230; &#246;           > D8 57 E6 11 F6 7F 00 00 00 00 00 00 00 00 00 00 
{65} normal block at 0x0000024CB6FDE2B0, 16 bytes long.
 Data: <P &#230; &#246;           > 50 04 E6 11 F6 7F 00 00 00 00 00 00 00 00 00 00 
{64} normal block at 0x0000024CB6FDE170, 16 bytes long.
 Data: <0 &#230; &#246;           > 30 04 E6 11 F6 7F 00 00 00 00 00 00 00 00 00 00 
{63} normal block at 0x0000024CB6FDD450, 16 bytes long.
 Data: <&#224; &#230; &#246;           > E0 02 E6 11 F6 7F 00 00 00 00 00 00 00 00 00 00 
{62} normal block at 0x0000024CB6FDDEF0, 16 bytes long.
 Data: <  &#230; &#246;           > 10 04 E6 11 F6 7F 00 00 00 00 00 00 00 00 00 00 
{61} normal block at 0x0000024CB6FDDB80, 16 bytes long.
 Data: <p &#230; &#246;           > 70 04 E6 11 F6 7F 00 00 00 00 00 00 00 00 00 00 
{60} normal block at 0x0000024CB6FDD5E0, 16 bytes long.
 Data: < &#192;&#228; &#246;           > 18 C0 E4 11 F6 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


©2026 Universitat Pompeu Fabra