Task 38619084

Name HIF2A_2_A04_A06_r0_3-QUICO_ATM_GAFF2_NAGL_hif2a_2-2-6-RND1418_0
Workunit 31570488
Created 18 Apr 2026, 18:35:06 UTC
Sent 18 Apr 2026, 18:35:19 UTC
Report deadline 23 Apr 2026, 18:35:19 UTC
Received 19 Apr 2026, 11:43:36 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 644191
Run time 3 hours 11 min 28 sec
CPU time 3 hours 6 min 39 sec
Validate state Valid
Credit 750,000.00
Device peak FLOPS 5,721.73 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 422.52 MB
Peak swap size 3.39 GB
Peak disk usage 2.90 GB

Stderr output

<core_client_version>8.2.9</core_client_version>
<![CDATA[
<stderr_txt>
10:32:51 (10380): wrapper (7.9.26016): starting
10:32:51 (10380): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A04_A06_0.pdb
QB_A04_A06_0.xml
QB_A04_A06.inpcrd
QB_A04_A06_input.yaml
QB_A04_A06.pdb
QB_A04_A06.prmtop
QB_A04_A06_sys.xml
run.bat
run.sh
10:32:52 (10380): Library/usr/bin/tar.exe exited; CPU time 0.000000
10:32:52 (10380): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\2\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\2\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
13:43:22 (10380): C:/Windows/system32/cmd.exe exited; CPU time 11199.859375
13:43:22 (10380): called boinc_finish(0)
0 bytes in 0 Free Blocks.
726 bytes in 8 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 161045393 bytes.
Dumping objects ->
{3835298} normal block at 0x000002A3678F58B0, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835287} normal block at 0x000002A3678F55A0, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835276} normal block at 0x000002A3678F5840, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{3835265} normal block at 0x000002A3678F5530, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835254} normal block at 0x000002A3678F5760, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{3835223} normal block at 0x000002A369567270, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835212} normal block at 0x000002A3695C4090, 235 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
..\api\boinc_api.cpp(309) : {3835209} normal block at 0x000002A3678ED9E0, 8 bytes long.
 Data: <  &#198;g&#163;   > 00 00 C6 67 A3 02 00 00 
{3834587} normal block at 0x000002A3678F50A0, 235 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
{3833959} normal block at 0x000002A3678ED940, 8 bytes long.
 Data: < &#219; g&#163;   > 20 DB 8D 67 A3 02 00 00 
..\zip\boinc_zip.cpp(122) : {311} normal block at 0x000002A3678E1A50, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{296} normal block at 0x000002A3678E1D30, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{295} normal block at 0x000002A3678F60B0, 16 bytes long.
 Data: < q g&#163;           > 18 71 8F 67 A3 02 00 00 00 00 00 00 00 00 00 00 
{294} normal block at 0x000002A3678F6790, 16 bytes long.
 Data: <&#240;p g&#163;           > F0 70 8F 67 A3 02 00 00 00 00 00 00 00 00 00 00 
{293} normal block at 0x000002A3678F05F0, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{292} normal block at 0x000002A3678F6740, 16 bytes long.
 Data: <&#200;p g&#163;           > C8 70 8F 67 A3 02 00 00 00 00 00 00 00 00 00 00 
{291} normal block at 0x000002A3678F66F0, 16 bytes long.
 Data: <&#160;p g&#163;           > A0 70 8F 67 A3 02 00 00 00 00 00 00 00 00 00 00 
{290} normal block at 0x000002A3678F62E0, 16 bytes long.
 Data: <xp g&#163;           > 78 70 8F 67 A3 02 00 00 00 00 00 00 00 00 00 00 
{289} normal block at 0x000002A3678F64C0, 16 bytes long.
 Data: <Pp g&#163;           > 50 70 8F 67 A3 02 00 00 00 00 00 00 00 00 00 00 
{288} normal block at 0x000002A3678F5920, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{287} normal block at 0x000002A3678F6D30, 16 bytes long.
 Data: <x-&#142;g&#163;           > 78 2D 8E 67 A3 02 00 00 00 00 00 00 00 00 00 00 
{286} normal block at 0x000002A3678F0230, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{285} normal block at 0x000002A3678F6100, 16 bytes long.
 Data: <P-&#142;g&#163;           > 50 2D 8E 67 A3 02 00 00 00 00 00 00 00 00 00 00 
{283} normal block at 0x000002A3678F6BA0, 16 bytes long.
 Data: <(-&#142;g&#163;           > 28 2D 8E 67 A3 02 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x000002A3678F6290, 16 bytes long.
 Data: < -&#142;g&#163;           > 00 2D 8E 67 A3 02 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x000002A3678F6B00, 16 bytes long.
 Data: <&#216;,&#142;g&#163;           > D8 2C 8E 67 A3 02 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x000002A3678F6650, 16 bytes long.
 Data: <&#176;,&#142;g&#163;           > B0 2C 8E 67 A3 02 00 00 00 00 00 00 00 00 00 00 
{279} normal block at 0x000002A3678F5F20, 16 bytes long.
 Data: < ,&#142;g&#163;           > 88 2C 8E 67 A3 02 00 00 00 00 00 00 00 00 00 00 
{278} normal block at 0x000002A3678EFE10, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{277} normal block at 0x000002A3678F6AB0, 16 bytes long.
 Data: <`,&#142;g&#163;           > 60 2C 8E 67 A3 02 00 00 00 00 00 00 00 00 00 00 
{276} normal block at 0x000002A3678E2C60, 320 bytes long.
 Data: <&#176;j g&#163;    &#254;&#142;g&#163;   > B0 6A 8F 67 A3 02 00 00 10 FE 8E 67 A3 02 00 00 
{275} normal block at 0x000002A3678F6600, 16 bytes long.
 Data: <0p g&#163;           > 30 70 8F 67 A3 02 00 00 00 00 00 00 00 00 00 00 
{274} normal block at 0x000002A3678F61F0, 16 bytes long.
 Data: < p g&#163;           > 08 70 8F 67 A3 02 00 00 00 00 00 00 00 00 00 00 
{273} normal block at 0x000002A3678F01D0, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{272} normal block at 0x000002A3678F6A60, 16 bytes long.
 Data: <&#224;o g&#163;           > E0 6F 8F 67 A3 02 00 00 00 00 00 00 00 00 00 00 
{271} normal block at 0x000002A3678F0770, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{270} normal block at 0x000002A3678F6240, 16 bytes long.
 Data: <(o g&#163;           > 28 6F 8F 67 A3 02 00 00 00 00 00 00 00 00 00 00 
{269} normal block at 0x000002A3678F6BF0, 16 bytes long.
 Data: < o g&#163;           > 00 6F 8F 67 A3 02 00 00 00 00 00 00 00 00 00 00 
{268} normal block at 0x000002A3678F65B0, 16 bytes long.
 Data: <&#216;n g&#163;           > D8 6E 8F 67 A3 02 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x000002A3678F61A0, 16 bytes long.
 Data: <&#176;n g&#163;           > B0 6E 8F 67 A3 02 00 00 00 00 00 00 00 00 00 00 
{266} normal block at 0x000002A3678F6420, 16 bytes long.
 Data: < n g&#163;           > 88 6E 8F 67 A3 02 00 00 00 00 00 00 00 00 00 00 
{265} normal block at 0x000002A3678F68D0, 16 bytes long.
 Data: <`n g&#163;           > 60 6E 8F 67 A3 02 00 00 00 00 00 00 00 00 00 00 
{263} normal block at 0x000002A3678F6560, 16 bytes long.
 Data: <&#224;S g&#163;           > E0 53 8F 67 A3 02 00 00 00 00 00 00 00 00 00 00 
{262} normal block at 0x000002A3678F53E0, 40 bytes long.
 Data: <`e g&#163;   prVi&#163;   > 60 65 8F 67 A3 02 00 00 70 72 56 69 A3 02 00 00 
{261} normal block at 0x000002A3678F63D0, 16 bytes long.
 Data: <@n g&#163;           > 40 6E 8F 67 A3 02 00 00 00 00 00 00 00 00 00 00 
{260} normal block at 0x000002A3678F6A10, 16 bytes long.
 Data: < n g&#163;           > 18 6E 8F 67 A3 02 00 00 00 00 00 00 00 00 00 00 
{259} normal block at 0x000002A3678EFF90, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{258} normal block at 0x000002A3678F5ED0, 16 bytes long.
 Data: <&#240;m g&#163;           > F0 6D 8F 67 A3 02 00 00 00 00 00 00 00 00 00 00 
{257} normal block at 0x000002A3678F6DF0, 992 bytes long.
 Data: <&#208;^ g&#163;    &#255;&#142;g&#163;   > D0 5E 8F 67 A3 02 00 00 90 FF 8E 67 A3 02 00 00 
{93} normal block at 0x000002A3678F02F0, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{92} normal block at 0x000002A3678ED620, 16 bytes long.
 Data: <@&#231; g&#163;           > 40 E7 8D 67 A3 02 00 00 00 00 00 00 00 00 00 00 
{91} normal block at 0x000002A3678DE740, 40 bytes long.
 Data: < &#214;&#142;g&#163;   &#240;  g&#163;   > 20 D6 8E 67 A3 02 00 00 F0 02 8F 67 A3 02 00 00 
{70} normal block at 0x000002A3678ED6C0, 16 bytes long.
 Data: < &#234;&#169;&#183;&#247;           > 80 EA A9 B7 F7 7F 00 00 00 00 00 00 00 00 00 00 
{69} normal block at 0x000002A3678ED850, 16 bytes long.
 Data: <@&#233;&#169;&#183;&#247;           > 40 E9 A9 B7 F7 7F 00 00 00 00 00 00 00 00 00 00 
{68} normal block at 0x000002A3678EDC60, 16 bytes long.
 Data: <&#248;W&#166;&#183;&#247;           > F8 57 A6 B7 F7 7F 00 00 00 00 00 00 00 00 00 00 
{67} normal block at 0x000002A3678EDFD0, 16 bytes long.
 Data: <&#216;W&#166;&#183;&#247;           > D8 57 A6 B7 F7 7F 00 00 00 00 00 00 00 00 00 00 
{66} normal block at 0x000002A3678EDE40, 16 bytes long.
 Data: <P &#166;&#183;&#247;           > 50 04 A6 B7 F7 7F 00 00 00 00 00 00 00 00 00 00 
{65} normal block at 0x000002A3678ED710, 16 bytes long.
 Data: <0 &#166;&#183;&#247;           > 30 04 A6 B7 F7 7F 00 00 00 00 00 00 00 00 00 00 
{64} normal block at 0x000002A3678EE160, 16 bytes long.
 Data: <&#224; &#166;&#183;&#247;           > E0 02 A6 B7 F7 7F 00 00 00 00 00 00 00 00 00 00 
{63} normal block at 0x000002A3678EDC10, 16 bytes long.
 Data: <  &#166;&#183;&#247;           > 10 04 A6 B7 F7 7F 00 00 00 00 00 00 00 00 00 00 
{62} normal block at 0x000002A3678EDBC0, 16 bytes long.
 Data: <p &#166;&#183;&#247;           > 70 04 A6 B7 F7 7F 00 00 00 00 00 00 00 00 00 00 
{61} normal block at 0x000002A3678EE250, 16 bytes long.
 Data: < &#192;&#164;&#183;&#247;           > 18 C0 A4 B7 F7 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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