Task 38617428

Name HIF2A_2_A39_A14_r0_5-QUICO_ATM_GAFF2_NAGL_hif2a_2-1-6-RND7422_2
Workunit 31569025
Created 18 Apr 2026, 4:19:10 UTC
Sent 18 Apr 2026, 4:19:18 UTC
Report deadline 23 Apr 2026, 4:19:18 UTC
Received 18 Apr 2026, 13:06:22 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 629577
Run time 1 hours 37 min 58 sec
CPU time 1 hours 28 min 18 sec
Validate state Valid
Credit 750,000.00
Device peak FLOPS 53,463.85 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 490.79 MB
Peak swap size 9.62 GB
Peak disk usage 2.90 GB

Stderr output

<core_client_version>8.2.9</core_client_version>
<![CDATA[
<stderr_txt>
07:28:42 (21296): wrapper (7.9.26016): starting
07:28:42 (21296): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A39_A14_0.pdb
QB_A39_A14_0.xml
QB_A39_A14.inpcrd
QB_A39_A14_input.yaml
QB_A39_A14.pdb
QB_A39_A14.prmtop
QB_A39_A14_sys.xml
run.bat
run.sh
07:28:43 (21296): Library/usr/bin/tar.exe exited; CPU time 0.000000
07:28:43 (21296): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\15\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\15\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
09:06:03 (21296): C:/Windows/system32/cmd.exe exited; CPU time 5298.062500
09:06:03 (21296): called boinc_finish(0)
0 bytes in 0 Free Blocks.
460 bytes in 8 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 118488545 bytes.
Dumping objects ->
{3835547} normal block at 0x0000019FB3F154F0, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835536} normal block at 0x0000019FB3F15480, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835525} normal block at 0x0000019FB3F153A0, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{3835514} normal block at 0x0000019FB3F15330, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835503} normal block at 0x0000019FB3F15100, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{3835472} normal block at 0x0000019FB5CBA9B0, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835461} normal block at 0x0000019FB5CCECC0, 102 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
..\api\boinc_api.cpp(309) : {3835458} normal block at 0x0000019FB3F0E5E0, 8 bytes long.
 Data: <  &#151;&#181;&#159;   > 00 00 97 B5 9F 01 00 00 
{3834685} normal block at 0x0000019FB5CCEC10, 102 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
{3833963} normal block at 0x0000019FB3F0DBE0, 8 bytes long.
 Data: <P&#235;&#188;&#181;&#159;   > 50 EB BC B5 9F 01 00 00 
..\zip\boinc_zip.cpp(122) : {313} normal block at 0x0000019FB3F01F50, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{298} normal block at 0x0000019FB3EFFDA0, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{297} normal block at 0x0000019FB3F16150, 16 bytes long.
 Data: <Xm&#241;&#179;&#159;           > 58 6D F1 B3 9F 01 00 00 00 00 00 00 00 00 00 00 
{296} normal block at 0x0000019FB3F16010, 16 bytes long.
 Data: <0m&#241;&#179;&#159;           > 30 6D F1 B3 9F 01 00 00 00 00 00 00 00 00 00 00 
{295} normal block at 0x0000019FB3F10560, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{294} normal block at 0x0000019FB3F15FC0, 16 bytes long.
 Data: < m&#241;&#179;&#159;           > 08 6D F1 B3 9F 01 00 00 00 00 00 00 00 00 00 00 
{293} normal block at 0x0000019FB3F16060, 16 bytes long.
 Data: <&#224;l&#241;&#179;&#159;           > E0 6C F1 B3 9F 01 00 00 00 00 00 00 00 00 00 00 
{292} normal block at 0x0000019FB3F16650, 16 bytes long.
 Data: <&#184;l&#241;&#179;&#159;           > B8 6C F1 B3 9F 01 00 00 00 00 00 00 00 00 00 00 
{291} normal block at 0x0000019FB3F15CA0, 16 bytes long.
 Data: < l&#241;&#179;&#159;           > 90 6C F1 B3 9F 01 00 00 00 00 00 00 00 00 00 00 
{290} normal block at 0x0000019FB3F14F40, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{289} normal block at 0x0000019FB3F16100, 16 bytes long.
 Data: <&#232; &#240;&#179;&#159;           > E8 0D F0 B3 9F 01 00 00 00 00 00 00 00 00 00 00 
{288} normal block at 0x0000019FB3F10680, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{287} normal block at 0x0000019FB3F15C50, 16 bytes long.
 Data: <&#192; &#240;&#179;&#159;           > C0 0D F0 B3 9F 01 00 00 00 00 00 00 00 00 00 00 
{285} normal block at 0x0000019FB3F15C00, 16 bytes long.
 Data: <  &#240;&#179;&#159;           > 98 0D F0 B3 9F 01 00 00 00 00 00 00 00 00 00 00 
{284} normal block at 0x0000019FB3F15BB0, 16 bytes long.
 Data: <p &#240;&#179;&#159;           > 70 0D F0 B3 9F 01 00 00 00 00 00 00 00 00 00 00 
{283} normal block at 0x0000019FB3F15B60, 16 bytes long.
 Data: <H &#240;&#179;&#159;           > 48 0D F0 B3 9F 01 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x0000019FB3F15B10, 16 bytes long.
 Data: <  &#240;&#179;&#159;           > 20 0D F0 B3 9F 01 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x0000019FB3F160B0, 16 bytes long.
 Data: <&#248; &#240;&#179;&#159;           > F8 0C F0 B3 9F 01 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x0000019FB3F0FDE0, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{279} normal block at 0x0000019FB3F15F70, 16 bytes long.
 Data: <&#208; &#240;&#179;&#159;           > D0 0C F0 B3 9F 01 00 00 00 00 00 00 00 00 00 00 
{278} normal block at 0x0000019FB3F00CD0, 320 bytes long.
 Data: <p_&#241;&#179;&#159;   &#224;&#253;&#240;&#179;&#159;   > 70 5F F1 B3 9F 01 00 00 E0 FD F0 B3 9F 01 00 00 
{277} normal block at 0x0000019FB3F161F0, 16 bytes long.
 Data: <pl&#241;&#179;&#159;           > 70 6C F1 B3 9F 01 00 00 00 00 00 00 00 00 00 00 
{276} normal block at 0x0000019FB3F161A0, 16 bytes long.
 Data: <Hl&#241;&#179;&#159;           > 48 6C F1 B3 9F 01 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x0000019FB3F0FD80, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{274} normal block at 0x0000019FB3F166A0, 16 bytes long.
 Data: < l&#241;&#179;&#159;           > 20 6C F1 B3 9F 01 00 00 00 00 00 00 00 00 00 00 
{273} normal block at 0x0000019FB3F0FFC0, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{272} normal block at 0x0000019FB3F16790, 16 bytes long.
 Data: <hk&#241;&#179;&#159;           > 68 6B F1 B3 9F 01 00 00 00 00 00 00 00 00 00 00 
{271} normal block at 0x0000019FB3F15AC0, 16 bytes long.
 Data: <@k&#241;&#179;&#159;           > 40 6B F1 B3 9F 01 00 00 00 00 00 00 00 00 00 00 
{270} normal block at 0x0000019FB3F15F20, 16 bytes long.
 Data: < k&#241;&#179;&#159;           > 18 6B F1 B3 9F 01 00 00 00 00 00 00 00 00 00 00 
{269} normal block at 0x0000019FB3F168D0, 16 bytes long.
 Data: <&#240;j&#241;&#179;&#159;           > F0 6A F1 B3 9F 01 00 00 00 00 00 00 00 00 00 00 
{268} normal block at 0x0000019FB3F15D90, 16 bytes long.
 Data: <&#200;j&#241;&#179;&#159;           > C8 6A F1 B3 9F 01 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x0000019FB3F16560, 16 bytes long.
 Data: <&#160;j&#241;&#179;&#159;           > A0 6A F1 B3 9F 01 00 00 00 00 00 00 00 00 00 00 
{265} normal block at 0x0000019FB3F169C0, 16 bytes long.
 Data: <`N&#241;&#179;&#159;           > 60 4E F1 B3 9F 01 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x0000019FB3F14E60, 40 bytes long.
 Data: <&#192;i&#241;&#179;&#159;   &#176;&#169;&#203;&#181;&#159;   > C0 69 F1 B3 9F 01 00 00 B0 A9 CB B5 9F 01 00 00 
{263} normal block at 0x0000019FB3F15A70, 16 bytes long.
 Data: < j&#241;&#179;&#159;           > 80 6A F1 B3 9F 01 00 00 00 00 00 00 00 00 00 00 
{262} normal block at 0x0000019FB3F16240, 16 bytes long.
 Data: <Xj&#241;&#179;&#159;           > 58 6A F1 B3 9F 01 00 00 00 00 00 00 00 00 00 00 
{261} normal block at 0x0000019FB3F10440, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{260} normal block at 0x0000019FB3F16380, 16 bytes long.
 Data: <0j&#241;&#179;&#159;           > 30 6A F1 B3 9F 01 00 00 00 00 00 00 00 00 00 00 
{259} normal block at 0x0000019FB3F16A30, 992 bytes long.
 Data: < c&#241;&#179;&#159;   @ &#241;&#179;&#159;   > 80 63 F1 B3 9F 01 00 00 40 04 F1 B3 9F 01 00 00 
{95} normal block at 0x0000019FB3F0FAE0, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{94} normal block at 0x0000019FB3F0E1D0, 16 bytes long.
 Data: <&#160;&#201;&#239;&#179;&#159;           > A0 C9 EF B3 9F 01 00 00 00 00 00 00 00 00 00 00 
{93} normal block at 0x0000019FB3EFC9A0, 40 bytes long.
 Data: <&#208;&#225;&#240;&#179;&#159;   &#224;&#250;&#240;&#179;&#159;   > D0 E1 F0 B3 9F 01 00 00 E0 FA F0 B3 9F 01 00 00 
{72} normal block at 0x0000019FB3F0E220, 16 bytes long.
 Data: < &#234;2y&#246;           > 80 EA 32 79 F6 7F 00 00 00 00 00 00 00 00 00 00 
{71} normal block at 0x0000019FB3F0D910, 16 bytes long.
 Data: <@&#233;2y&#246;           > 40 E9 32 79 F6 7F 00 00 00 00 00 00 00 00 00 00 
{70} normal block at 0x0000019FB3F0DEB0, 16 bytes long.
 Data: <&#248;W/y&#246;           > F8 57 2F 79 F6 7F 00 00 00 00 00 00 00 00 00 00 
{69} normal block at 0x0000019FB3F0DF50, 16 bytes long.
 Data: <&#216;W/y&#246;           > D8 57 2F 79 F6 7F 00 00 00 00 00 00 00 00 00 00 
{68} normal block at 0x0000019FB3F0E450, 16 bytes long.
 Data: <P /y&#246;           > 50 04 2F 79 F6 7F 00 00 00 00 00 00 00 00 00 00 
{67} normal block at 0x0000019FB3F0D870, 16 bytes long.
 Data: <0 /y&#246;           > 30 04 2F 79 F6 7F 00 00 00 00 00 00 00 00 00 00 
{66} normal block at 0x0000019FB3F0DB90, 16 bytes long.
 Data: <&#224; /y&#246;           > E0 02 2F 79 F6 7F 00 00 00 00 00 00 00 00 00 00 
{65} normal block at 0x0000019FB3F0E180, 16 bytes long.
 Data: <  /y&#246;           > 10 04 2F 79 F6 7F 00 00 00 00 00 00 00 00 00 00 
{64} normal block at 0x0000019FB3F0E040, 16 bytes long.
 Data: <p /y&#246;           > 70 04 2F 79 F6 7F 00 00 00 00 00 00 00 00 00 00 
{63} normal block at 0x0000019FB3F0DE10, 16 bytes long.
 Data: < &#192;-y&#246;           > 18 C0 2D 79 F6 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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