Task 38616501

Name CDK2_A16_A10_r0_1-QUICO_ATM_GAFF2_NAGL_CDK2-0-6-RND2362_1
Workunit 31560826
Created 17 Apr 2026, 20:57:56 UTC
Sent 17 Apr 2026, 20:58:14 UTC
Report deadline 22 Apr 2026, 20:58:14 UTC
Received 18 Apr 2026, 18:32:06 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 621628
Run time 3 hours 59 min 40 sec
CPU time 3 hours 41 min 13 sec
Validate state Valid
Credit 750,000.00
Device peak FLOPS 42,631.93 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 805.65 MB
Peak swap size 10.14 GB
Peak disk usage 3.07 GB

Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
17:33:10 (40184): wrapper (7.9.26016): starting
17:33:10 (40184): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A16_A10_0.pdb
QB_A16_A10_0.xml
QB_A16_A10.inpcrd
QB_A16_A10_input.yaml
QB_A16_A10.pdb
QB_A16_A10.prmtop
QB_A16_A10_sys.xml
run.bat
run.sh
17:33:11 (40184): Library/usr/bin/tar.exe exited; CPU time 0.015625
17:33:11 (40184): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'E:\BOINC\slots\1\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'E:\BOINC\slots\1\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
tar: r*/*.dcd: Cannot stat: No such file or directory
tar: Exiting with failure status due to previous errors
21:31:42 (40184): C:/Windows/system32/cmd.exe exited; CPU time 13272.984375
21:31:42 (40184): called boinc_finish(0)
0 bytes in 0 Free Blocks.
176 bytes in 6 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 311724649 bytes.
Dumping objects ->
{3835478} normal block at 0x00000272CEB59E70, 48 bytes long.
 Data: <PATH=E:\BOINC\sl> 50 41 54 48 3D 45 3A 5C 42 4F 49 4E 43 5C 73 6C 
{3835467} normal block at 0x00000272D0930070, 32 bytes long.
 Data: <HOME=E:\BOINC\sl> 48 4F 4D 45 3D 45 3A 5C 42 4F 49 4E 43 5C 73 6C 
{3835456} normal block at 0x00000272D09312D0, 32 bytes long.
 Data: <TMP=E:\BOINC\slo> 54 4D 50 3D 45 3A 5C 42 4F 49 4E 43 5C 73 6C 6F 
{3835445} normal block at 0x00000272D09304F0, 32 bytes long.
 Data: <TEMP=E:\BOINC\sl> 54 45 4D 50 3D 45 3A 5C 42 4F 49 4E 43 5C 73 6C 
{3835434} normal block at 0x00000272D0930E50, 32 bytes long.
 Data: <TMPDIR=E:\BOINC\> 54 4D 50 44 49 52 3D 45 3A 5C 42 4F 49 4E 43 5C 
{3835403} normal block at 0x00000272CEB59E00, 48 bytes long.
 Data: <PATH=E:\BOINC\sl> 50 41 54 48 3D 45 3A 5C 42 4F 49 4E 43 5C 73 6C 
..\api\boinc_api.cpp(309) : {3835390} normal block at 0x00000272CEB2E2D0, 8 bytes long.
 Data: <   &#207;r   > 00 00 03 CF 72 02 00 00 
{3833973} normal block at 0x00000272CEB2E910, 8 bytes long.
 Data: <&#192;&#224;&#177;&#206;r   > C0 E0 B1 CE 72 02 00 00 
..\zip\boinc_zip.cpp(122) : {318} normal block at 0x00000272CEB21250, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{303} normal block at 0x00000272CEB226E0, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{302} normal block at 0x00000272CEB36C30, 16 bytes long.
 Data: <X{&#179;&#206;r           > 58 7B B3 CE 72 02 00 00 00 00 00 00 00 00 00 00 
{301} normal block at 0x00000272CEB37400, 16 bytes long.
 Data: <0{&#179;&#206;r           > 30 7B B3 CE 72 02 00 00 00 00 00 00 00 00 00 00 
{300} normal block at 0x00000272CEB304C0, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{299} normal block at 0x00000272CEB368C0, 16 bytes long.
 Data: < {&#179;&#206;r           > 08 7B B3 CE 72 02 00 00 00 00 00 00 00 00 00 00 
{298} normal block at 0x00000272CEB37090, 16 bytes long.
 Data: <&#224;z&#179;&#206;r           > E0 7A B3 CE 72 02 00 00 00 00 00 00 00 00 00 00 
{297} normal block at 0x00000272CEB36870, 16 bytes long.
 Data: <&#184;z&#179;&#206;r           > B8 7A B3 CE 72 02 00 00 00 00 00 00 00 00 00 00 
{296} normal block at 0x00000272CEB37220, 16 bytes long.
 Data: <&#144;z&#179;&#206;r           > 90 7A B3 CE 72 02 00 00 00 00 00 00 00 00 00 00 
{295} normal block at 0x00000272CEB34F30, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{294} normal block at 0x00000272CEB37540, 16 bytes long.
 Data: <&#232; &#178;&#206;r           > E8 07 B2 CE 72 02 00 00 00 00 00 00 00 00 00 00 
{293} normal block at 0x00000272CEB303A0, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{292} normal block at 0x00000272CEB36FF0, 16 bytes long.
 Data: <&#192; &#178;&#206;r           > C0 07 B2 CE 72 02 00 00 00 00 00 00 00 00 00 00 
{290} normal block at 0x00000272CEB37180, 16 bytes long.
 Data: <  &#178;&#206;r           > 98 07 B2 CE 72 02 00 00 00 00 00 00 00 00 00 00 
{289} normal block at 0x00000272CEB36FA0, 16 bytes long.
 Data: <p &#178;&#206;r           > 70 07 B2 CE 72 02 00 00 00 00 00 00 00 00 00 00 
{288} normal block at 0x00000272CEB371D0, 16 bytes long.
 Data: <H &#178;&#206;r           > 48 07 B2 CE 72 02 00 00 00 00 00 00 00 00 00 00 
{287} normal block at 0x00000272CEB377C0, 16 bytes long.
 Data: <  &#178;&#206;r           > 20 07 B2 CE 72 02 00 00 00 00 00 00 00 00 00 00 
{286} normal block at 0x00000272CEB36F00, 16 bytes long.
 Data: <&#248; &#178;&#206;r           > F8 06 B2 CE 72 02 00 00 00 00 00 00 00 00 00 00 
{285} normal block at 0x00000272CEB30E80, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{284} normal block at 0x00000272CEB36EB0, 16 bytes long.
 Data: <&#208; &#178;&#206;r           > D0 06 B2 CE 72 02 00 00 00 00 00 00 00 00 00 00 
{283} normal block at 0x00000272CEB206D0, 320 bytes long.
 Data: <&#176;n&#179;&#206;r   &#128; &#179;&#206;r   > B0 6E B3 CE 72 02 00 00 80 0E B3 CE 72 02 00 00 
{282} normal block at 0x00000272CEB36D20, 16 bytes long.
 Data: <pz&#179;&#206;r           > 70 7A B3 CE 72 02 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x00000272CEB36C80, 16 bytes long.
 Data: <Hz&#179;&#206;r           > 48 7A B3 CE 72 02 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x00000272CEB30BE0, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{279} normal block at 0x00000272CEB36AA0, 16 bytes long.
 Data: < z&#179;&#206;r           > 20 7A B3 CE 72 02 00 00 00 00 00 00 00 00 00 00 
{278} normal block at 0x00000272CEB30460, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{277} normal block at 0x00000272CEB37770, 16 bytes long.
 Data: <hy&#179;&#206;r           > 68 79 B3 CE 72 02 00 00 00 00 00 00 00 00 00 00 
{276} normal block at 0x00000272CEB36E60, 16 bytes long.
 Data: <@y&#179;&#206;r           > 40 79 B3 CE 72 02 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x00000272CEB37360, 16 bytes long.
 Data: < y&#179;&#206;r           > 18 79 B3 CE 72 02 00 00 00 00 00 00 00 00 00 00 
{274} normal block at 0x00000272CEB374F0, 16 bytes long.
 Data: <&#240;x&#179;&#206;r           > F0 78 B3 CE 72 02 00 00 00 00 00 00 00 00 00 00 
{273} normal block at 0x00000272CEB374A0, 16 bytes long.
 Data: <&#200;x&#179;&#206;r           > C8 78 B3 CE 72 02 00 00 00 00 00 00 00 00 00 00 
{272} normal block at 0x00000272CEB375E0, 16 bytes long.
 Data: <&#160;x&#179;&#206;r           > A0 78 B3 CE 72 02 00 00 00 00 00 00 00 00 00 00 
{270} normal block at 0x00000272CEB36F50, 16 bytes long.
 Data: < L&#179;&#206;r           > 20 4C B3 CE 72 02 00 00 00 00 00 00 00 00 00 00 
{269} normal block at 0x00000272CEB34C20, 40 bytes long.
 Data: <Po&#179;&#206;r    &#158;&#181;&#206;r   > 50 6F B3 CE 72 02 00 00 00 9E B5 CE 72 02 00 00 
{268} normal block at 0x00000272CEB37040, 16 bytes long.
 Data: <&#128;x&#179;&#206;r           > 80 78 B3 CE 72 02 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x00000272CEB376D0, 16 bytes long.
 Data: <Xx&#179;&#206;r           > 58 78 B3 CE 72 02 00 00 00 00 00 00 00 00 00 00 
{266} normal block at 0x00000272CEB30880, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{265} normal block at 0x00000272CEB370E0, 16 bytes long.
 Data: <0x&#179;&#206;r           > 30 78 B3 CE 72 02 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x00000272CEB37830, 992 bytes long.
 Data: <&#224;p&#179;&#206;r   &#128; &#179;&#206;r   > E0 70 B3 CE 72 02 00 00 80 08 B3 CE 72 02 00 00 
{100} normal block at 0x00000272CEB30DC0, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{99} normal block at 0x00000272CEB2EE10, 16 bytes long.
 Data: <&#176;K&#179;&#206;r           > B0 4B B3 CE 72 02 00 00 00 00 00 00 00 00 00 00 
{98} normal block at 0x00000272CEB34BB0, 40 bytes long.
 Data: < &#238;&#178;&#206;r   &#192; &#179;&#206;r   > 10 EE B2 CE 72 02 00 00 C0 0D B3 CE 72 02 00 00 
{77} normal block at 0x00000272CEB2E230, 16 bytes long.
 Data: <&#128;&#234; &#238;&#247;           > 80 EA B9 EE F7 7F 00 00 00 00 00 00 00 00 00 00 
{76} normal block at 0x00000272CEB2E4B0, 16 bytes long.
 Data: <@&#233; &#238;&#247;           > 40 E9 B9 EE F7 7F 00 00 00 00 00 00 00 00 00 00 
{75} normal block at 0x00000272CEB2E870, 16 bytes long.
 Data: <&#248;W&#182;&#238;&#247;           > F8 57 B6 EE F7 7F 00 00 00 00 00 00 00 00 00 00 
{74} normal block at 0x00000272CEB2EBE0, 16 bytes long.
 Data: <&#216;W&#182;&#238;&#247;           > D8 57 B6 EE F7 7F 00 00 00 00 00 00 00 00 00 00 
{73} normal block at 0x00000272CEB2EAF0, 16 bytes long.
 Data: <P &#182;&#238;&#247;           > 50 04 B6 EE F7 7F 00 00 00 00 00 00 00 00 00 00 
{72} normal block at 0x00000272CEB2EC30, 16 bytes long.
 Data: <0 &#182;&#238;&#247;           > 30 04 B6 EE F7 7F 00 00 00 00 00 00 00 00 00 00 
{71} normal block at 0x00000272CEB2E1E0, 16 bytes long.
 Data: <&#224; &#182;&#238;&#247;           > E0 02 B6 EE F7 7F 00 00 00 00 00 00 00 00 00 00 
{70} normal block at 0x00000272CEB2E640, 16 bytes long.
 Data: <  &#182;&#238;&#247;           > 10 04 B6 EE F7 7F 00 00 00 00 00 00 00 00 00 00 
{69} normal block at 0x00000272CEB2E050, 16 bytes long.
 Data: <p &#182;&#238;&#247;           > 70 04 B6 EE F7 7F 00 00 00 00 00 00 00 00 00 00 
{68} normal block at 0x00000272CEB2E0F0, 16 bytes long.
 Data: < &#192;&#180;&#238;&#247;           > 18 C0 B4 EE F7 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


©2026 Universitat Pompeu Fabra