Task 38615495

Name p38_2_A23_A28_r0_4-QUICO_ATM_GAFF2_NAGL_p38_2-0-6-RND4045_0
Workunit 31567795
Created 17 Apr 2026, 16:50:54 UTC
Sent 17 Apr 2026, 17:27:27 UTC
Report deadline 22 Apr 2026, 17:27:27 UTC
Received 18 Apr 2026, 6:06:37 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 619891
Run time 4 hours 51 min 42 sec
CPU time 4 hours 45 min 36 sec
Validate state Valid
Credit 750,000.00
Device peak FLOPS 16,318.67 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 722.42 MB
Peak swap size 11.34 GB
Peak disk usage 3.02 GB

Stderr output

<core_client_version>8.2.9</core_client_version>
<![CDATA[
<stderr_txt>
18:53:46 (13916): wrapper (7.9.26016): starting
18:53:46 (13916): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A23_A28_0.pdb
QB_A23_A28_0.xml
QB_A23_A28.inpcrd
QB_A23_A28_input.yaml
QB_A23_A28.pdb
QB_A23_A28.prmtop
QB_A23_A28_sys.xml
run.bat
run.sh
18:53:48 (13916): Library/usr/bin/tar.exe exited; CPU time 0.015625
18:53:48 (13916): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\25\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\25\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
00:06:14 (13916): C:/Windows/system32/cmd.exe exited; CPU time 17136.203125
00:06:14 (13916): called boinc_finish(0)
0 bytes in 0 Free Blocks.
256 bytes in 6 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 444767023 bytes.
Dumping objects ->
{3835292} normal block at 0x000001FA67D30160, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835281} normal block at 0x000001FA67D30550, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835270} normal block at 0x000001FA67D30010, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{3835259} normal block at 0x000001FA65625AC0, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835248} normal block at 0x000001FA65625A50, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{3835217} normal block at 0x000001FA67C21250, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
..\api\boinc_api.cpp(309) : {3835204} normal block at 0x000001FA656199D0, 8 bytes long.
 Data: <  \e&#250;   > 00 00 5C 65 FA 01 00 00 
{3833997} normal block at 0x000001FA65619980, 8 bytes long.
 Data: < &#241;&#210;g&#250;   > 00 F1 D2 67 FA 01 00 00 
..\zip\boinc_zip.cpp(122) : {330} normal block at 0x000001FA65612500, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{315} normal block at 0x000001FA6561C6D0, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{314} normal block at 0x000001FA65628240, 16 bytes long.
 Data: <x&#149;be&#250;           > 78 95 62 65 FA 01 00 00 00 00 00 00 00 00 00 00 
{313} normal block at 0x000001FA656280B0, 16 bytes long.
 Data: <P&#149;be&#250;           > 50 95 62 65 FA 01 00 00 00 00 00 00 00 00 00 00 
{312} normal block at 0x000001FA65626330, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{311} normal block at 0x000001FA65628A60, 16 bytes long.
 Data: <(&#149;be&#250;           > 28 95 62 65 FA 01 00 00 00 00 00 00 00 00 00 00 
{310} normal block at 0x000001FA65628060, 16 bytes long.
 Data: < &#149;be&#250;           > 00 95 62 65 FA 01 00 00 00 00 00 00 00 00 00 00 
{309} normal block at 0x000001FA65628FB0, 16 bytes long.
 Data: <&#216;&#148;be&#250;           > D8 94 62 65 FA 01 00 00 00 00 00 00 00 00 00 00 
{308} normal block at 0x000001FA65628A10, 16 bytes long.
 Data: <&#176;&#148;be&#250;           > B0 94 62 65 FA 01 00 00 00 00 00 00 00 00 00 00 
{307} normal block at 0x000001FA65625430, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{306} normal block at 0x000001FA65628EC0, 16 bytes long.
 Data: <8 ae&#250;           > 38 11 61 65 FA 01 00 00 00 00 00 00 00 00 00 00 
{305} normal block at 0x000001FA656266F0, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{304} normal block at 0x000001FA65628560, 16 bytes long.
 Data: <  ae&#250;           > 10 11 61 65 FA 01 00 00 00 00 00 00 00 00 00 00 
{302} normal block at 0x000001FA656289C0, 16 bytes long.
 Data: <&#232; ae&#250;           > E8 10 61 65 FA 01 00 00 00 00 00 00 00 00 00 00 
{301} normal block at 0x000001FA65628970, 16 bytes long.
 Data: <&#192; ae&#250;           > C0 10 61 65 FA 01 00 00 00 00 00 00 00 00 00 00 
{300} normal block at 0x000001FA65628920, 16 bytes long.
 Data: <  ae&#250;           > 98 10 61 65 FA 01 00 00 00 00 00 00 00 00 00 00 
{299} normal block at 0x000001FA65628E20, 16 bytes long.
 Data: <p ae&#250;           > 70 10 61 65 FA 01 00 00 00 00 00 00 00 00 00 00 
{298} normal block at 0x000001FA656288D0, 16 bytes long.
 Data: <H ae&#250;           > 48 10 61 65 FA 01 00 00 00 00 00 00 00 00 00 00 
{297} normal block at 0x000001FA65625DF0, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{296} normal block at 0x000001FA656287E0, 16 bytes long.
 Data: <  ae&#250;           > 20 10 61 65 FA 01 00 00 00 00 00 00 00 00 00 00 
{295} normal block at 0x000001FA65611020, 320 bytes long.
 Data: <&#224;&#135;be&#250;   &#240;]be&#250;   > E0 87 62 65 FA 01 00 00 F0 5D 62 65 FA 01 00 00 
{294} normal block at 0x000001FA656281A0, 16 bytes long.
 Data: < &#148;be&#250;           > 90 94 62 65 FA 01 00 00 00 00 00 00 00 00 00 00 
{293} normal block at 0x000001FA65628510, 16 bytes long.
 Data: <h&#148;be&#250;           > 68 94 62 65 FA 01 00 00 00 00 00 00 00 00 00 00 
{292} normal block at 0x000001FA65625D30, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{291} normal block at 0x000001FA65628880, 16 bytes long.
 Data: <@&#148;be&#250;           > 40 94 62 65 FA 01 00 00 00 00 00 00 00 00 00 00 
{290} normal block at 0x000001FA65626A50, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{289} normal block at 0x000001FA65628740, 16 bytes long.
 Data: < &#147;be&#250;           > 88 93 62 65 FA 01 00 00 00 00 00 00 00 00 00 00 
{288} normal block at 0x000001FA65628150, 16 bytes long.
 Data: <`&#147;be&#250;           > 60 93 62 65 FA 01 00 00 00 00 00 00 00 00 00 00 
{287} normal block at 0x000001FA65628D80, 16 bytes long.
 Data: <8&#147;be&#250;           > 38 93 62 65 FA 01 00 00 00 00 00 00 00 00 00 00 
{286} normal block at 0x000001FA65628100, 16 bytes long.
 Data: < &#147;be&#250;           > 10 93 62 65 FA 01 00 00 00 00 00 00 00 00 00 00 
{285} normal block at 0x000001FA65628BA0, 16 bytes long.
 Data: <&#232;&#146;be&#250;           > E8 92 62 65 FA 01 00 00 00 00 00 00 00 00 00 00 
{284} normal block at 0x000001FA656286F0, 16 bytes long.
 Data: <&#192;&#146;be&#250;           > C0 92 62 65 FA 01 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x000001FA65628790, 16 bytes long.
 Data: < Ube&#250;           > 80 55 62 65 FA 01 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x000001FA65625580, 40 bytes long.
 Data: < &#135;be&#250;   P &#194;g&#250;   > 90 87 62 65 FA 01 00 00 50 12 C2 67 FA 01 00 00 
{280} normal block at 0x000001FA656286A0, 16 bytes long.
 Data: <&#160;&#146;be&#250;           > A0 92 62 65 FA 01 00 00 00 00 00 00 00 00 00 00 
{279} normal block at 0x000001FA65628B50, 16 bytes long.
 Data: <x&#146;be&#250;           > 78 92 62 65 FA 01 00 00 00 00 00 00 00 00 00 00 
{278} normal block at 0x000001FA65626090, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{277} normal block at 0x000001FA65628B00, 16 bytes long.
 Data: <P&#146;be&#250;           > 50 92 62 65 FA 01 00 00 00 00 00 00 00 00 00 00 
{276} normal block at 0x000001FA65629250, 992 bytes long.
 Data: < &#139;be&#250;    `be&#250;   > 00 8B 62 65 FA 01 00 00 90 60 62 65 FA 01 00 00 
{112} normal block at 0x000001FA65626870, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{111} normal block at 0x000001FA6561A790, 16 bytes long.
 Data: < Xbe&#250;           > 90 58 62 65 FA 01 00 00 00 00 00 00 00 00 00 00 
{110} normal block at 0x000001FA65625890, 40 bytes long.
 Data: < &#167;ae&#250;   phbe&#250;   > 90 A7 61 65 FA 01 00 00 70 68 62 65 FA 01 00 00 
{89} normal block at 0x000001FA65619F70, 16 bytes long.
 Data: < &#234;&#202;A&#247;           > 80 EA CA 41 F7 7F 00 00 00 00 00 00 00 00 00 00 
{88} normal block at 0x000001FA6561A010, 16 bytes long.
 Data: <@&#233;&#202;A&#247;           > 40 E9 CA 41 F7 7F 00 00 00 00 00 00 00 00 00 00 
{87} normal block at 0x000001FA6561A150, 16 bytes long.
 Data: <&#248;W&#199;A&#247;           > F8 57 C7 41 F7 7F 00 00 00 00 00 00 00 00 00 00 
{86} normal block at 0x000001FA6561A100, 16 bytes long.
 Data: <&#216;W&#199;A&#247;           > D8 57 C7 41 F7 7F 00 00 00 00 00 00 00 00 00 00 
{85} normal block at 0x000001FA6561A740, 16 bytes long.
 Data: <P &#199;A&#247;           > 50 04 C7 41 F7 7F 00 00 00 00 00 00 00 00 00 00 
{84} normal block at 0x000001FA6561A6F0, 16 bytes long.
 Data: <0 &#199;A&#247;           > 30 04 C7 41 F7 7F 00 00 00 00 00 00 00 00 00 00 
{83} normal block at 0x000001FA6561A6A0, 16 bytes long.
 Data: <&#224; &#199;A&#247;           > E0 02 C7 41 F7 7F 00 00 00 00 00 00 00 00 00 00 
{82} normal block at 0x000001FA65619C00, 16 bytes long.
 Data: <  &#199;A&#247;           > 10 04 C7 41 F7 7F 00 00 00 00 00 00 00 00 00 00 
{81} normal block at 0x000001FA6561A0B0, 16 bytes long.
 Data: <p &#199;A&#247;           > 70 04 C7 41 F7 7F 00 00 00 00 00 00 00 00 00 00 
{80} normal block at 0x000001FA65619CF0, 16 bytes long.
 Data: < &#192;&#197;A&#247;           > 18 C0 C5 41 F7 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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