Task 38613700

Name hif2a_A26_A11_r0_1-QUICO_ATM_GAFF2_NAGL_hif2a-5-6-RND7616_1
Workunit 31566087
Created 17 Apr 2026, 0:17:20 UTC
Sent 17 Apr 2026, 0:17:39 UTC
Report deadline 22 Apr 2026, 0:17:39 UTC
Received 17 Apr 2026, 10:11:27 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 651346
Run time 3 hours 58 min 36 sec
CPU time 3 hours 32 min 35 sec
Validate state Valid
Credit 750,000.00
Device peak FLOPS 29,331.45 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 458.39 MB
Peak swap size 12.55 GB
Peak disk usage 2.90 GB

Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
01:02:31 (9876): wrapper (7.9.26016): starting
01:02:31 (9876): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A26_A11_0.pdb
QB_A26_A11_0.xml
QB_A26_A11.inpcrd
QB_A26_A11_input.yaml
QB_A26_A11.pdb
QB_A26_A11.prmtop
QB_A26_A11_sys.xml
run.bat
run.sh
01:02:32 (9876): Library/usr/bin/tar.exe exited; CPU time 0.000000
01:02:32 (9876): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\1\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\1\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
05:00:31 (9876): C:/Windows/system32/cmd.exe exited; CPU time 12755.359375
05:00:31 (9876): called boinc_finish(0)
0 bytes in 0 Free Blocks.
726 bytes in 8 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 170179495 bytes.
Dumping objects ->
{3835568} normal block at 0x0000026C4FF42FE0, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835557} normal block at 0x0000026C4FF431A0, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835546} normal block at 0x0000026C4FF430C0, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{3835535} normal block at 0x0000026C4FF42E90, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835524} normal block at 0x0000026C4FF43130, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{3835493} normal block at 0x0000026C51D09D40, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835482} normal block at 0x0000026C4FF6A100, 235 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
..\api\boinc_api.cpp(309) : {3835479} normal block at 0x0000026C4FF3D960, 8 bytes long.
 Data: <  NPl   > 00 00 4E 50 6C 02 00 00 
{3834703} normal block at 0x0000026C4FF2B910, 235 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
{3833955} normal block at 0x0000026C4FF3D280, 8 bytes long.
 Data: < &#213;&#242;Ol   > 00 D5 F2 4F 6C 02 00 00 
..\zip\boinc_zip.cpp(122) : {309} normal block at 0x0000026C4FF30670, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{294} normal block at 0x0000026C4FF31F80, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{293} normal block at 0x0000026C4FF44020, 16 bytes long.
 Data: <&#216;O&#244;Ol           > D8 4F F4 4F 6C 02 00 00 00 00 00 00 00 00 00 00 
{292} normal block at 0x0000026C4FF43FD0, 16 bytes long.
 Data: <&#176;O&#244;Ol           > B0 4F F4 4F 6C 02 00 00 00 00 00 00 00 00 00 00 
{291} normal block at 0x0000026C4FF40E60, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{290} normal block at 0x0000026C4FF447F0, 16 bytes long.
 Data: < O&#244;Ol           > 88 4F F4 4F 6C 02 00 00 00 00 00 00 00 00 00 00 
{289} normal block at 0x0000026C4FF43D50, 16 bytes long.
 Data: <`O&#244;Ol           > 60 4F F4 4F 6C 02 00 00 00 00 00 00 00 00 00 00 
{288} normal block at 0x0000026C4FF44390, 16 bytes long.
 Data: <8O&#244;Ol           > 38 4F F4 4F 6C 02 00 00 00 00 00 00 00 00 00 00 
{287} normal block at 0x0000026C4FF43D00, 16 bytes long.
 Data: < O&#244;Ol           > 10 4F F4 4F 6C 02 00 00 00 00 00 00 00 00 00 00 
{286} normal block at 0x0000026C4FF2C470, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{285} normal block at 0x0000026C4FF44700, 16 bytes long.
 Data: <X&#240;&#242;Ol           > 58 F0 F2 4F 6C 02 00 00 00 00 00 00 00 00 00 00 
{284} normal block at 0x0000026C4FF407A0, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{283} normal block at 0x0000026C4FF44570, 16 bytes long.
 Data: <0&#240;&#242;Ol           > 30 F0 F2 4F 6C 02 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x0000026C4FF44610, 16 bytes long.
 Data: < &#240;&#242;Ol           > 08 F0 F2 4F 6C 02 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x0000026C4FF43EE0, 16 bytes long.
 Data: <&#224;&#239;&#242;Ol           > E0 EF F2 4F 6C 02 00 00 00 00 00 00 00 00 00 00 
{279} normal block at 0x0000026C4FF43990, 16 bytes long.
 Data: <&#184;&#239;&#242;Ol           > B8 EF F2 4F 6C 02 00 00 00 00 00 00 00 00 00 00 
{278} normal block at 0x0000026C4FF43CB0, 16 bytes long.
 Data: < &#239;&#242;Ol           > 90 EF F2 4F 6C 02 00 00 00 00 00 00 00 00 00 00 
{277} normal block at 0x0000026C4FF43940, 16 bytes long.
 Data: <h&#239;&#242;Ol           > 68 EF F2 4F 6C 02 00 00 00 00 00 00 00 00 00 00 
{276} normal block at 0x0000026C4FF40C80, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{275} normal block at 0x0000026C4FF44250, 16 bytes long.
 Data: <@&#239;&#242;Ol           > 40 EF F2 4F 6C 02 00 00 00 00 00 00 00 00 00 00 
{274} normal block at 0x0000026C4FF2EF40, 320 bytes long.
 Data: <PB&#244;Ol     &#244;Ol   > 50 42 F4 4F 6C 02 00 00 80 0C F4 4F 6C 02 00 00 
{273} normal block at 0x0000026C4FF43E40, 16 bytes long.
 Data: <&#240;N&#244;Ol           > F0 4E F4 4F 6C 02 00 00 00 00 00 00 00 00 00 00 
{272} normal block at 0x0000026C4FF43A80, 16 bytes long.
 Data: <&#200;N&#244;Ol           > C8 4E F4 4F 6C 02 00 00 00 00 00 00 00 00 00 00 
{271} normal block at 0x0000026C4FF40AA0, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{270} normal block at 0x0000026C4FF43F80, 16 bytes long.
 Data: <&#160;N&#244;Ol           > A0 4E F4 4F 6C 02 00 00 00 00 00 00 00 00 00 00 
{269} normal block at 0x0000026C4FF403E0, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{268} normal block at 0x0000026C4FF44480, 16 bytes long.
 Data: <&#232;M&#244;Ol           > E8 4D F4 4F 6C 02 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x0000026C4FF43AD0, 16 bytes long.
 Data: <&#192;M&#244;Ol           > C0 4D F4 4F 6C 02 00 00 00 00 00 00 00 00 00 00 
{266} normal block at 0x0000026C4FF43F30, 16 bytes long.
 Data: < M&#244;Ol           > 98 4D F4 4F 6C 02 00 00 00 00 00 00 00 00 00 00 
{265} normal block at 0x0000026C4FF446B0, 16 bytes long.
 Data: <pM&#244;Ol           > 70 4D F4 4F 6C 02 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x0000026C4FF44840, 16 bytes long.
 Data: <HM&#244;Ol           > 48 4D F4 4F 6C 02 00 00 00 00 00 00 00 00 00 00 
{263} normal block at 0x0000026C4FF43BC0, 16 bytes long.
 Data: < M&#244;Ol           > 20 4D F4 4F 6C 02 00 00 00 00 00 00 00 00 00 00 
{261} normal block at 0x0000026C4FF43C10, 16 bytes long.
 Data: < &#225;&#242;Ol           > 20 E1 F2 4F 6C 02 00 00 00 00 00 00 00 00 00 00 
{260} normal block at 0x0000026C4FF2E120, 40 bytes long.
 Data: < <&#244;Ol   @ &#208;Ql   > 10 3C F4 4F 6C 02 00 00 40 9D D0 51 6C 02 00 00 
{259} normal block at 0x0000026C4FF44430, 16 bytes long.
 Data: < M&#244;Ol           > 00 4D F4 4F 6C 02 00 00 00 00 00 00 00 00 00 00 
{258} normal block at 0x0000026C4FF444D0, 16 bytes long.
 Data: <&#216;L&#244;Ol           > D8 4C F4 4F 6C 02 00 00 00 00 00 00 00 00 00 00 
{257} normal block at 0x0000026C4FF40A40, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{256} normal block at 0x0000026C4FF447A0, 16 bytes long.
 Data: <&#176;L&#244;Ol           > B0 4C F4 4F 6C 02 00 00 00 00 00 00 00 00 00 00 
{255} normal block at 0x0000026C4FF44CB0, 992 bytes long.
 Data: <&#160;G&#244;Ol   @ &#244;Ol   > A0 47 F4 4F 6C 02 00 00 40 0A F4 4F 6C 02 00 00 
{91} normal block at 0x0000026C4FF41100, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{90} normal block at 0x0000026C4FF3D5A0, 16 bytes long.
 Data: < &#174;&#242;Ol           > 80 AE F2 4F 6C 02 00 00 00 00 00 00 00 00 00 00 
{89} normal block at 0x0000026C4FF2AE80, 40 bytes long.
 Data: <&#160;&#213;&#243;Ol     &#244;Ol   > A0 D5 F3 4F 6C 02 00 00 00 11 F4 4F 6C 02 00 00 
{68} normal block at 0x0000026C4FF3D1E0, 16 bytes long.
 Data: < &#234;&#147;&#217;&#247;           > 80 EA 93 D9 F7 7F 00 00 00 00 00 00 00 00 00 00 
{67} normal block at 0x0000026C4FF3DD20, 16 bytes long.
 Data: <@&#233;&#147;&#217;&#247;           > 40 E9 93 D9 F7 7F 00 00 00 00 00 00 00 00 00 00 
{66} normal block at 0x0000026C4FF3DCD0, 16 bytes long.
 Data: <&#248;W &#217;&#247;           > F8 57 90 D9 F7 7F 00 00 00 00 00 00 00 00 00 00 
{65} normal block at 0x0000026C4FF3D190, 16 bytes long.
 Data: <&#216;W &#217;&#247;           > D8 57 90 D9 F7 7F 00 00 00 00 00 00 00 00 00 00 
{64} normal block at 0x0000026C4FF3D780, 16 bytes long.
 Data: <P  &#217;&#247;           > 50 04 90 D9 F7 7F 00 00 00 00 00 00 00 00 00 00 
{63} normal block at 0x0000026C4FF3DC30, 16 bytes long.
 Data: <0  &#217;&#247;           > 30 04 90 D9 F7 7F 00 00 00 00 00 00 00 00 00 00 
{62} normal block at 0x0000026C4FF3DBE0, 16 bytes long.
 Data: <&#224;  &#217;&#247;           > E0 02 90 D9 F7 7F 00 00 00 00 00 00 00 00 00 00 
{61} normal block at 0x0000026C4FF3D640, 16 bytes long.
 Data: <   &#217;&#247;           > 10 04 90 D9 F7 7F 00 00 00 00 00 00 00 00 00 00 
{60} normal block at 0x0000026C4FF3D230, 16 bytes long.
 Data: <p  &#217;&#247;           > 70 04 90 D9 F7 7F 00 00 00 00 00 00 00 00 00 00 
{59} normal block at 0x0000026C4FF3CF60, 16 bytes long.
 Data: < &#192;&#142;&#217;&#247;           > 18 C0 8E D9 F7 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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