Task 38613666
| Name | p38_A22_A16_r0_1-QUICO_ATM_OpenFF_p38-2-6-RND5726_1 |
| Workunit | 31566108 |
| Created | 16 Apr 2026, 23:48:38 UTC |
| Sent | 16 Apr 2026, 23:48:43 UTC |
| Report deadline | 21 Apr 2026, 23:48:43 UTC |
| Received | 17 Apr 2026, 7:10:38 UTC |
| Server state | Over |
| Outcome | Computation error |
| Client state | Compute error |
| Exit status | 195 (0x000000C3) EXIT_CHILD_FAILED |
| Computer ID | 651966 |
| Run time | 4 hours 23 min 45 sec |
| CPU time | 4 hours 23 min 45 sec |
| Validate state | Invalid |
| Credit | 0.00 |
| Device peak FLOPS | 9,653.11 GFLOPS |
| Application version | ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121) windows_x86_64 |
| Peak working set size | 752.87 MB |
| Peak swap size | 12.92 GB |
| Peak disk usage | 3.07 GB |
Stderr output
<core_client_version>8.0.2</core_client_version>
<![CDATA[
<message>
(null) nelze spustit.
(0xc3) - exit code 195 (0xc3)</message>
<stderr_txt>
04:45:58 (5100): wrapper (7.9.26016): starting
04:45:58 (5100): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A22_A16_0.pdb
QB_A22_A16_0.xml
QB_A22_A16.inpcrd
QB_A22_A16_input.yaml
QB_A22_A16.pdb
QB_A22_A16.prmtop
QB_A22_A16_sys.xml
run.bat
run.sh
04:45:59 (5100): Library/usr/bin/tar.exe exited; CPU time 0.000000
04:45:59 (5100): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\2\Scripts' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\2\Scripts' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated. Import 'openmm' instead.
Traceback (most recent call last):
File "<frozen runpy>", line 198, in _run_module_as_main
File "<frozen runpy>", line 88, in _run_code
File "C:\ProgramData\BOINC\slots\2\Scripts\rbfe_production.exe\__main__.py", line 7, in <module>
File "C:\ProgramData\BOINC\slots\2\Lib\site-packages\atom_openmm\rbfe_production.py", line 33, in rbfe_production
rx.scheduleJobs()
File "C:\ProgramData\BOINC\slots\2\Lib\site-packages\atom_openmm\async_re.py", line 321, in scheduleJobs
self.transport.ProcessJobQueue(min_time,cycle_time)
File "C:\ProgramData\BOINC\slots\2\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 186, in ProcessJobQueue
self.isDone(repl,0)
File "C:\ProgramData\BOINC\slots\2\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 287, in isDone
retcode = self._update_replica(job)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ProgramData\BOINC\slots\2\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 212, in _update_replica
pot = job['openmm_worker'].get_energy()
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ProgramData\BOINC\slots\2\Lib\site-packages\atom_openmm\ommworker.py", line 451, in get_energy
return self._worker_getenergy()
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ProgramData\BOINC\slots\2\Lib\site-packages\atom_openmm\ommworker.py", line 400, in _worker_getenergy
state = self.simulation.context.getState(getEnergy = True)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ProgramData\BOINC\slots\2\Lib\site-packages\openmm\openmm.py", line 5022, in getState
state = _openmm.Context_getState(self, types, enforcePeriodicBox, groups_mask)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
openmm.OpenMMException: Particle coordinate is NaN. For more information, see https://github.com/openmm/openmm/wiki/Frequently-Asked-Questions#nan
09:08:48 (5100): C:/Windows/system32/cmd.exe exited; CPU time 15825.890625
09:08:48 (5100): app exit status: 0x16
09:08:48 (5100): called boinc_finish(195)
0 bytes in 0 Free Blocks.
656 bytes in 8 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 226556887 bytes.
Dumping objects ->
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{3835668} normal block at 0x0000022037F8CB20, 48 bytes long.
Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44
{3835657} normal block at 0x00000220363B4BB0, 48 bytes long.
Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61
{3835646} normal block at 0x00000220363B4670, 48 bytes long.
Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44
{3835635} normal block at 0x00000220363B4A60, 48 bytes long.
Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61
{3835604} normal block at 0x0000022037FD38C0, 64 bytes long.
Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44
{3835593} normal block at 0x00000220363AAB00, 200 bytes long.
Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65
..\api\boinc_api.cpp(309) : {3835590} normal block at 0x00000220363AD060, 8 bytes long.
Data: < 16 > 00 00 31 36 20 02 00 00
{3834756} normal block at 0x00000220363AA9F0, 200 bytes long.
Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65
{3833957} normal block at 0x00000220363AD470, 8 bytes long.
Data: < Ö96 > 20 D6 39 36 20 02 00 00
..\zip\boinc_zip.cpp(122) : {310} normal block at 0x00000220363A0CC0, 260 bytes long.
Data: < > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00
{295} normal block at 0x00000220363A2040, 80 bytes long.
Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C
{294} normal block at 0x00000220363B53C0, 16 bytes long.
Data: <he;6 > 68 65 3B 36 20 02 00 00 00 00 00 00 00 00 00 00
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Data: <@e;6 > 40 65 3B 36 20 02 00 00 00 00 00 00 00 00 00 00
{292} normal block at 0x00000220363B0F10, 32 bytes long.
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{289} normal block at 0x00000220363B6180, 16 bytes long.
Data: <Èd;6 > C8 64 3B 36 20 02 00 00 00 00 00 00 00 00 00 00
{288} normal block at 0x00000220363B6130, 16 bytes long.
Data: < d;6 > A0 64 3B 36 20 02 00 00 00 00 00 00 00 00 00 00
{287} normal block at 0x00000220363B4910, 48 bytes long.
Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F
{286} normal block at 0x00000220363B5B90, 16 bytes long.
Data: <hý96 > 68 FD 39 36 20 02 00 00 00 00 00 00 00 00 00 00
{285} normal block at 0x00000220363B1150, 32 bytes long.
Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69
{284} normal block at 0x00000220363B60E0, 16 bytes long.
Data: <@ý96 > 40 FD 39 36 20 02 00 00 00 00 00 00 00 00 00 00
{282} normal block at 0x00000220363B57D0, 16 bytes long.
Data: < ý96 > 18 FD 39 36 20 02 00 00 00 00 00 00 00 00 00 00
{281} normal block at 0x00000220363B52D0, 16 bytes long.
Data: <ðü96 > F0 FC 39 36 20 02 00 00 00 00 00 00 00 00 00 00
{280} normal block at 0x00000220363B5AF0, 16 bytes long.
Data: <Èü96 > C8 FC 39 36 20 02 00 00 00 00 00 00 00 00 00 00
{279} normal block at 0x00000220363B58C0, 16 bytes long.
Data: < ü96 > A0 FC 39 36 20 02 00 00 00 00 00 00 00 00 00 00
{278} normal block at 0x00000220363B6090, 16 bytes long.
Data: <xü96 > 78 FC 39 36 20 02 00 00 00 00 00 00 00 00 00 00
{277} normal block at 0x00000220363B0BB0, 32 bytes long.
Data: <CUDA_DEVICE=1 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 31 00 50 55
{276} normal block at 0x00000220363B59B0, 16 bytes long.
Data: <Pü96 > 50 FC 39 36 20 02 00 00 00 00 00 00 00 00 00 00
{275} normal block at 0x000002203639FC50, 320 bytes long.
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Data: < d;6 > 80 64 3B 36 20 02 00 00 00 00 00 00 00 00 00 00
{273} normal block at 0x00000220363B5DC0, 16 bytes long.
Data: <Xd;6 > 58 64 3B 36 20 02 00 00 00 00 00 00 00 00 00 00
{272} normal block at 0x00000220363B0790, 32 bytes long.
Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65
{271} normal block at 0x00000220363B5AA0, 16 bytes long.
Data: <0d;6 > 30 64 3B 36 20 02 00 00 00 00 00 00 00 00 00 00
{270} normal block at 0x00000220363B0CD0, 32 bytes long.
Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62
{269} normal block at 0x00000220363B5370, 16 bytes long.
Data: <xc;6 > 78 63 3B 36 20 02 00 00 00 00 00 00 00 00 00 00
{268} normal block at 0x00000220363B5410, 16 bytes long.
Data: <Pc;6 > 50 63 3B 36 20 02 00 00 00 00 00 00 00 00 00 00
{267} normal block at 0x00000220363B5A50, 16 bytes long.
Data: <(c;6 > 28 63 3B 36 20 02 00 00 00 00 00 00 00 00 00 00
{266} normal block at 0x00000220363B5D70, 16 bytes long.
Data: < c;6 > 00 63 3B 36 20 02 00 00 00 00 00 00 00 00 00 00
{265} normal block at 0x00000220363B6040, 16 bytes long.
Data: <Øb;6 > D8 62 3B 36 20 02 00 00 00 00 00 00 00 00 00 00
{264} normal block at 0x00000220363B5B40, 16 bytes long.
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{262} normal block at 0x00000220363B5820, 16 bytes long.
Data: < L;6 > 20 4C 3B 36 20 02 00 00 00 00 00 00 00 00 00 00
{261} normal block at 0x00000220363B4C20, 40 bytes long.
Data: < X;6 À8ý7 > 20 58 3B 36 20 02 00 00 C0 38 FD 37 20 02 00 00
{260} normal block at 0x00000220363B5280, 16 bytes long.
Data: < b;6 > 90 62 3B 36 20 02 00 00 00 00 00 00 00 00 00 00
{259} normal block at 0x00000220363B5550, 16 bytes long.
Data: <hb;6 > 68 62 3B 36 20 02 00 00 00 00 00 00 00 00 00 00
{258} normal block at 0x00000220363B0AF0, 32 bytes long.
Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F
{257} normal block at 0x00000220363B5320, 16 bytes long.
Data: <@b;6 > 40 62 3B 36 20 02 00 00 00 00 00 00 00 00 00 00
{256} normal block at 0x00000220363B6240, 992 bytes long.
Data: < S;6 ð ;6 > 20 53 3B 36 20 02 00 00 F0 0A 3B 36 20 02 00 00
{92} normal block at 0x00000220363B10F0, 32 bytes long.
Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F
{91} normal block at 0x00000220363ADBA0, 16 bytes long.
Data: < Å96 > 90 C5 39 36 20 02 00 00 00 00 00 00 00 00 00 00
{90} normal block at 0x000002203639C590, 40 bytes long.
Data: < Û:6 ð ;6 > A0 DB 3A 36 20 02 00 00 F0 10 3B 36 20 02 00 00
{69} normal block at 0x00000220363AD100, 16 bytes long.
Data: < ê› ö > 80 EA 9B 1B F6 7F 00 00 00 00 00 00 00 00 00 00
{68} normal block at 0x00000220363AD0B0, 16 bytes long.
Data: <@é› ö > 40 E9 9B 1B F6 7F 00 00 00 00 00 00 00 00 00 00
{67} normal block at 0x00000220363AD2E0, 16 bytes long.
Data: <øW ö > F8 57 98 1B F6 7F 00 00 00 00 00 00 00 00 00 00
{66} normal block at 0x00000220363AD970, 16 bytes long.
Data: <ØW ö > D8 57 98 1B F6 7F 00 00 00 00 00 00 00 00 00 00
{65} normal block at 0x00000220363AD240, 16 bytes long.
Data: <P ö > 50 04 98 1B F6 7F 00 00 00 00 00 00 00 00 00 00
{64} normal block at 0x00000220363AD010, 16 bytes long.
Data: <0 ö > 30 04 98 1B F6 7F 00 00 00 00 00 00 00 00 00 00
{63} normal block at 0x00000220363AD7E0, 16 bytes long.
Data: <à ö > E0 02 98 1B F6 7F 00 00 00 00 00 00 00 00 00 00
{62} normal block at 0x00000220363ADBF0, 16 bytes long.
Data: < ö > 10 04 98 1B F6 7F 00 00 00 00 00 00 00 00 00 00
{61} normal block at 0x00000220363AD420, 16 bytes long.
Data: <p ö > 70 04 98 1B F6 7F 00 00 00 00 00 00 00 00 00 00
{60} normal block at 0x00000220363AD6F0, 16 bytes long.
Data: < À– ö > 18 C0 96 1B F6 7F 00 00 00 00 00 00 00 00 00 00
Object dump complete.
</stderr_txt>
]]>
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