Task 38610099

Name hif2a_A09_A10_r0_2-QUICO_ATM_GAFF2_NAGL_hif2a-2-6-RND8630_0
Workunit 31563056
Created 15 Apr 2026, 6:19:25 UTC
Sent 15 Apr 2026, 6:19:28 UTC
Report deadline 20 Apr 2026, 6:19:28 UTC
Received 15 Apr 2026, 15:02:42 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 652042
Run time 3 hours 17 min 15 sec
CPU time 3 hours 3 min 23 sec
Validate state Valid
Credit 750,000.00
Device peak FLOPS 83,074.86 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 478.89 MB
Peak swap size 12.78 GB
Peak disk usage 3.46 GB

Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
04:45:42 (22588): wrapper (7.9.26016): starting
04:45:42 (22588): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A09_A10_0.pdb
QB_A09_A10_0.xml
QB_A09_A10.inpcrd
QB_A09_A10_input.yaml
QB_A09_A10.pdb
QB_A09_A10.prmtop
QB_A09_A10_sys.xml
run.bat
run.sh
04:45:43 (22588): Library/usr/bin/tar.exe exited; CPU time 0.015625
04:45:43 (22588): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'c:\ProgramData\BOINC2\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'c:\ProgramData\BOINC2\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
08:02:02 (22588): C:/Windows/system32/cmd.exe exited; CPU time 11003.046875
08:02:02 (22588): called boinc_finish(0)
0 bytes in 0 Free Blocks.
256 bytes in 6 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 176656227 bytes.
Dumping objects ->
{3835650} normal block at 0x0000013DFB829AC0, 48 bytes long.
 Data: <PATH=c:\programD> 50 41 54 48 3D 63 3A 5C 70 72 6F 67 72 61 6D 44 
{3835639} normal block at 0x0000013DFB8041F0, 48 bytes long.
 Data: <HOME=c:\programD> 48 4F 4D 45 3D 63 3A 5C 70 72 6F 67 72 61 6D 44 
{3835628} normal block at 0x0000013DFB804180, 48 bytes long.
 Data: <TMP=c:\programDa> 54 4D 50 3D 63 3A 5C 70 72 6F 67 72 61 6D 44 61 
{3835617} normal block at 0x0000013DFB803E00, 48 bytes long.
 Data: <TEMP=c:\programD> 54 45 4D 50 3D 63 3A 5C 70 72 6F 67 72 61 6D 44 
{3835606} normal block at 0x0000013DFB803FC0, 48 bytes long.
 Data: <TMPDIR=c:\progra> 54 4D 50 44 49 52 3D 63 3A 5C 70 72 6F 67 72 61 
{3835575} normal block at 0x0000013DFD594560, 64 bytes long.
 Data: <PATH=c:\programD> 50 41 54 48 3D 63 3A 5C 70 72 6F 67 72 61 6D 44 
..\api\boinc_api.cpp(309) : {3835562} normal block at 0x0000013DFB7FD880, 8 bytes long.
 Data: <  &#190;&#251;=   > 00 00 BE FB 3D 01 00 00 
{3833961} normal block at 0x0000013DFB7FDBA0, 8 bytes long.
 Data: < &#216;~&#251;=   > 00 D8 7E FB 3D 01 00 00 
..\zip\boinc_zip.cpp(122) : {312} normal block at 0x0000013DFB7F1750, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{297} normal block at 0x0000013DFB7F2060, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{296} normal block at 0x0000013DFB804EE0, 16 bytes long.
 Data: <8[ &#251;=           > 38 5B 80 FB 3D 01 00 00 00 00 00 00 00 00 00 00 
{295} normal block at 0x0000013DFB804AD0, 16 bytes long.
 Data: < [ &#251;=           > 10 5B 80 FB 3D 01 00 00 00 00 00 00 00 00 00 00 
{294} normal block at 0x0000013DFB800C10, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{293} normal block at 0x0000013DFB8050C0, 16 bytes long.
 Data: <&#232;Z &#251;=           > E8 5A 80 FB 3D 01 00 00 00 00 00 00 00 00 00 00 
{292} normal block at 0x0000013DFB805200, 16 bytes long.
 Data: <&#192;Z &#251;=           > C0 5A 80 FB 3D 01 00 00 00 00 00 00 00 00 00 00 
{291} normal block at 0x0000013DFB804A80, 16 bytes long.
 Data: < Z &#251;=           > 98 5A 80 FB 3D 01 00 00 00 00 00 00 00 00 00 00 
{290} normal block at 0x0000013DFB8052F0, 16 bytes long.
 Data: <pZ &#251;=           > 70 5A 80 FB 3D 01 00 00 00 00 00 00 00 00 00 00 
{289} normal block at 0x0000013DFB8042D0, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{288} normal block at 0x0000013DFB805700, 16 bytes long.
 Data: <X  &#251;=           > 58 08 7F FB 3D 01 00 00 00 00 00 00 00 00 00 00 
{287} normal block at 0x0000013DFB800BB0, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{286} normal block at 0x0000013DFB8056B0, 16 bytes long.
 Data: <0  &#251;=           > 30 08 7F FB 3D 01 00 00 00 00 00 00 00 00 00 00 
{284} normal block at 0x0000013DFB805250, 16 bytes long.
 Data: <   &#251;=           > 08 08 7F FB 3D 01 00 00 00 00 00 00 00 00 00 00 
{283} normal block at 0x0000013DFB805110, 16 bytes long.
 Data: <&#224;  &#251;=           > E0 07 7F FB 3D 01 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x0000013DFB804A30, 16 bytes long.
 Data: <&#184;  &#251;=           > B8 07 7F FB 3D 01 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x0000013DFB8052A0, 16 bytes long.
 Data: <   &#251;=           > 90 07 7F FB 3D 01 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x0000013DFB8049E0, 16 bytes long.
 Data: <h  &#251;=           > 68 07 7F FB 3D 01 00 00 00 00 00 00 00 00 00 00 
{279} normal block at 0x0000013DFB8019F0, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{278} normal block at 0x0000013DFB804E90, 16 bytes long.
 Data: <@  &#251;=           > 40 07 7F FB 3D 01 00 00 00 00 00 00 00 00 00 00 
{277} normal block at 0x0000013DFB7F0740, 320 bytes long.
 Data: < N &#251;=   &#240;  &#251;=   > 90 4E 80 FB 3D 01 00 00 F0 19 80 FB 3D 01 00 00 
{276} normal block at 0x0000013DFB804B70, 16 bytes long.
 Data: <PZ &#251;=           > 50 5A 80 FB 3D 01 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x0000013DFB805070, 16 bytes long.
 Data: <(Z &#251;=           > 28 5A 80 FB 3D 01 00 00 00 00 00 00 00 00 00 00 
{274} normal block at 0x0000013DFB800CD0, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{273} normal block at 0x0000013DFB805020, 16 bytes long.
 Data: < Z &#251;=           > 00 5A 80 FB 3D 01 00 00 00 00 00 00 00 00 00 00 
{272} normal block at 0x0000013DFB800F10, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{271} normal block at 0x0000013DFB804E40, 16 bytes long.
 Data: <HY &#251;=           > 48 59 80 FB 3D 01 00 00 00 00 00 00 00 00 00 00 
{270} normal block at 0x0000013DFB804DA0, 16 bytes long.
 Data: < Y &#251;=           > 20 59 80 FB 3D 01 00 00 00 00 00 00 00 00 00 00 
{269} normal block at 0x0000013DFB805480, 16 bytes long.
 Data: <&#248;X &#251;=           > F8 58 80 FB 3D 01 00 00 00 00 00 00 00 00 00 00 
{268} normal block at 0x0000013DFB805430, 16 bytes long.
 Data: <&#208;X &#251;=           > D0 58 80 FB 3D 01 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x0000013DFB8053E0, 16 bytes long.
 Data: <&#168;X &#251;=           > A8 58 80 FB 3D 01 00 00 00 00 00 00 00 00 00 00 
{266} normal block at 0x0000013DFB8055C0, 16 bytes long.
 Data: < X &#251;=           > 80 58 80 FB 3D 01 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x0000013DFB805660, 16 bytes long.
 Data: <`B &#251;=           > 60 42 80 FB 3D 01 00 00 00 00 00 00 00 00 00 00 
{263} normal block at 0x0000013DFB804260, 40 bytes long.
 Data: <`V &#251;=   `EY&#253;=   > 60 56 80 FB 3D 01 00 00 60 45 59 FD 3D 01 00 00 
{262} normal block at 0x0000013DFB8051B0, 16 bytes long.
 Data: <`X &#251;=           > 60 58 80 FB 3D 01 00 00 00 00 00 00 00 00 00 00 
{261} normal block at 0x0000013DFB804D00, 16 bytes long.
 Data: <8X &#251;=           > 38 58 80 FB 3D 01 00 00 00 00 00 00 00 00 00 00 
{260} normal block at 0x0000013DFB800EB0, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{259} normal block at 0x0000013DFB804C60, 16 bytes long.
 Data: < X &#251;=           > 10 58 80 FB 3D 01 00 00 00 00 00 00 00 00 00 00 
{258} normal block at 0x0000013DFB805810, 992 bytes long.
 Data: <`L &#251;=   &#176;  &#251;=   > 60 4C 80 FB 3D 01 00 00 B0 0E 80 FB 3D 01 00 00 
{94} normal block at 0x0000013DFB801930, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{93} normal block at 0x0000013DFB7FE000, 16 bytes long.
 Data: < &#239;~&#251;=           > 80 EF 7E FB 3D 01 00 00 00 00 00 00 00 00 00 00 
{92} normal block at 0x0000013DFB7EEF80, 40 bytes long.
 Data: < &#224; &#251;=   0  &#251;=   > 00 E0 7F FB 3D 01 00 00 30 19 80 FB 3D 01 00 00 
{71} normal block at 0x0000013DFB7FDF60, 16 bytes long.
 Data: < &#234;&#139;&#134;&#247;           > 80 EA 8B 86 F7 7F 00 00 00 00 00 00 00 00 00 00 
{70} normal block at 0x0000013DFB7FDF10, 16 bytes long.
 Data: <@&#233;&#139;&#134;&#247;           > 40 E9 8B 86 F7 7F 00 00 00 00 00 00 00 00 00 00 
{69} normal block at 0x0000013DFB7FD600, 16 bytes long.
 Data: <&#248;W &#134;&#247;           > F8 57 88 86 F7 7F 00 00 00 00 00 00 00 00 00 00 
{68} normal block at 0x0000013DFB7FD4C0, 16 bytes long.
 Data: <&#216;W &#134;&#247;           > D8 57 88 86 F7 7F 00 00 00 00 00 00 00 00 00 00 
{67} normal block at 0x0000013DFB7FDD80, 16 bytes long.
 Data: <P  &#134;&#247;           > 50 04 88 86 F7 7F 00 00 00 00 00 00 00 00 00 00 
{66} normal block at 0x0000013DFB7FDD30, 16 bytes long.
 Data: <0  &#134;&#247;           > 30 04 88 86 F7 7F 00 00 00 00 00 00 00 00 00 00 
{65} normal block at 0x0000013DFB7FD740, 16 bytes long.
 Data: <&#224;  &#134;&#247;           > E0 02 88 86 F7 7F 00 00 00 00 00 00 00 00 00 00 
{64} normal block at 0x0000013DFB7FDEC0, 16 bytes long.
 Data: <   &#134;&#247;           > 10 04 88 86 F7 7F 00 00 00 00 00 00 00 00 00 00 
{63} normal block at 0x0000013DFB7FD510, 16 bytes long.
 Data: <p  &#134;&#247;           > 70 04 88 86 F7 7F 00 00 00 00 00 00 00 00 00 00 
{62} normal block at 0x0000013DFB7FDB00, 16 bytes long.
 Data: < &#192;&#134;&#134;&#247;           > 18 C0 86 86 F7 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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