Task 38608879

Name hif2a_A41_A38_r0_1-QUICO_ATM_GAFF2_NAGL_hif2a-2-6-RND5346_2
Workunit 31562049
Created 14 Apr 2026, 19:12:23 UTC
Sent 14 Apr 2026, 19:12:27 UTC
Report deadline 19 Apr 2026, 19:12:27 UTC
Received 15 Apr 2026, 6:40:47 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 617454
Run time 2 hours 17 min 38 sec
CPU time 2 hours 10 min 44 sec
Validate state Valid
Credit 750,000.00
Device peak FLOPS 37,179.72 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 467.55 MB
Peak swap size 8.11 GB
Peak disk usage 2.90 GB

Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
06:23:51 (17300): wrapper (7.9.26016): starting
06:23:51 (17300): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A41_A38_0.pdb
QB_A41_A38_0.xml
QB_A41_A38.inpcrd
QB_A41_A38_input.yaml
QB_A41_A38.pdb
QB_A41_A38.prmtop
QB_A41_A38_sys.xml
run.bat
run.sh
06:23:52 (17300): Library/usr/bin/tar.exe exited; CPU time 0.015625
06:23:52 (17300): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'D:\Boinc\Data\slots\4\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'D:\Boinc\Data\slots\4\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
08:40:00 (17300): C:/Windows/system32/cmd.exe exited; CPU time 7844.859375
08:40:00 (17300): called boinc_finish(0)
0 bytes in 0 Free Blocks.
458 bytes in 8 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 146435607 bytes.
Dumping objects ->
{3835280} normal block at 0x000001CF1985CBF0, 48 bytes long.
 Data: <PATH=D:\Boinc\Da> 50 41 54 48 3D 44 3A 5C 42 6F 69 6E 63 5C 44 61 
{3835269} normal block at 0x000001CF198F1960, 32 bytes long.
 Data: <HOME=D:\Boinc\Da> 48 4F 4D 45 3D 44 3A 5C 42 6F 69 6E 63 5C 44 61 
{3835258} normal block at 0x000001CF198F0DC0, 32 bytes long.
 Data: <TMP=D:\Boinc\Dat> 54 4D 50 3D 44 3A 5C 42 6F 69 6E 63 5C 44 61 74 
{3835247} normal block at 0x000001CF198F1120, 32 bytes long.
 Data: <TEMP=D:\Boinc\Da> 54 45 4D 50 3D 44 3A 5C 42 6F 69 6E 63 5C 44 61 
{3835236} normal block at 0x000001CF198F0E80, 32 bytes long.
 Data: <TMPDIR=D:\Boinc\> 54 4D 50 44 49 52 3D 44 3A 5C 42 6F 69 6E 63 5C 
{3835205} normal block at 0x000001CF1985C2C0, 48 bytes long.
 Data: <PATH=D:\Boinc\Da> 50 41 54 48 3D 44 3A 5C 42 6F 69 6E 63 5C 44 61 
{3835194} normal block at 0x000001CF17B8C830, 141 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
..\api\boinc_api.cpp(309) : {3835191} normal block at 0x000001CF17B2DAE0, 8 bytes long.
 Data: <  &#255; &#207;   > 00 00 FF 17 CF 01 00 00 
{3834568} normal block at 0x000001CF17B8D050, 141 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
{3833957} normal block at 0x000001CF17B2DD10, 8 bytes long.
 Data: <&#176;&#216;&#177; &#207;   > B0 D8 B1 17 CF 01 00 00 
..\zip\boinc_zip.cpp(122) : {310} normal block at 0x000001CF17B20E80, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{295} normal block at 0x000001CF17B21E00, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{294} normal block at 0x000001CF17B364F0, 16 bytes long.
 Data: <xi&#179; &#207;           > 78 69 B3 17 CF 01 00 00 00 00 00 00 00 00 00 00 
{293} normal block at 0x000001CF17B361D0, 16 bytes long.
 Data: <Pi&#179; &#207;           > 50 69 B3 17 CF 01 00 00 00 00 00 00 00 00 00 00 
{292} normal block at 0x000001CF17B30B70, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{291} normal block at 0x000001CF17B35CD0, 16 bytes long.
 Data: <(i&#179; &#207;           > 28 69 B3 17 CF 01 00 00 00 00 00 00 00 00 00 00 
{290} normal block at 0x000001CF17B36180, 16 bytes long.
 Data: < i&#179; &#207;           > 00 69 B3 17 CF 01 00 00 00 00 00 00 00 00 00 00 
{289} normal block at 0x000001CF17B36040, 16 bytes long.
 Data: <&#216;h&#179; &#207;           > D8 68 B3 17 CF 01 00 00 00 00 00 00 00 00 00 00 
{288} normal block at 0x000001CF17B35870, 16 bytes long.
 Data: <&#176;h&#179; &#207;           > B0 68 B3 17 CF 01 00 00 00 00 00 00 00 00 00 00 
{287} normal block at 0x000001CF17B33AB0, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{286} normal block at 0x000001CF17B36360, 16 bytes long.
 Data: < &#239;&#177; &#207;           > 98 EF B1 17 CF 01 00 00 00 00 00 00 00 00 00 00 
{285} normal block at 0x000001CF17B31830, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{284} normal block at 0x000001CF17B35AA0, 16 bytes long.
 Data: <p&#239;&#177; &#207;           > 70 EF B1 17 CF 01 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x000001CF17B35780, 16 bytes long.
 Data: <H&#239;&#177; &#207;           > 48 EF B1 17 CF 01 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x000001CF17B35FF0, 16 bytes long.
 Data: < &#239;&#177; &#207;           > 20 EF B1 17 CF 01 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x000001CF17B36130, 16 bytes long.
 Data: <&#248;&#238;&#177; &#207;           > F8 EE B1 17 CF 01 00 00 00 00 00 00 00 00 00 00 
{279} normal block at 0x000001CF17B35690, 16 bytes long.
 Data: <&#208;&#238;&#177; &#207;           > D0 EE B1 17 CF 01 00 00 00 00 00 00 00 00 00 00 
{278} normal block at 0x000001CF17B35FA0, 16 bytes long.
 Data: <&#168;&#238;&#177; &#207;           > A8 EE B1 17 CF 01 00 00 00 00 00 00 00 00 00 00 
{277} normal block at 0x000001CF17B31770, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{276} normal block at 0x000001CF17B36400, 16 bytes long.
 Data: < &#238;&#177; &#207;           > 80 EE B1 17 CF 01 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x000001CF17B1EE80, 320 bytes long.
 Data: < d&#179; &#207;   p &#179; &#207;   > 00 64 B3 17 CF 01 00 00 70 17 B3 17 CF 01 00 00 
{274} normal block at 0x000001CF17B35E60, 16 bytes long.
 Data: < h&#179; &#207;           > 90 68 B3 17 CF 01 00 00 00 00 00 00 00 00 00 00 
{273} normal block at 0x000001CF17B36090, 16 bytes long.
 Data: <hh&#179; &#207;           > 68 68 B3 17 CF 01 00 00 00 00 00 00 00 00 00 00 
{272} normal block at 0x000001CF17B31470, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{271} normal block at 0x000001CF17B35C80, 16 bytes long.
 Data: <@h&#179; &#207;           > 40 68 B3 17 CF 01 00 00 00 00 00 00 00 00 00 00 
{270} normal block at 0x000001CF17B30990, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{269} normal block at 0x000001CF17B35D70, 16 bytes long.
 Data: < g&#179; &#207;           > 88 67 B3 17 CF 01 00 00 00 00 00 00 00 00 00 00 
{268} normal block at 0x000001CF17B365E0, 16 bytes long.
 Data: <`g&#179; &#207;           > 60 67 B3 17 CF 01 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x000001CF17B35960, 16 bytes long.
 Data: <8g&#179; &#207;           > 38 67 B3 17 CF 01 00 00 00 00 00 00 00 00 00 00 
{266} normal block at 0x000001CF17B35820, 16 bytes long.
 Data: < g&#179; &#207;           > 10 67 B3 17 CF 01 00 00 00 00 00 00 00 00 00 00 
{265} normal block at 0x000001CF17B35730, 16 bytes long.
 Data: <&#232;f&#179; &#207;           > E8 66 B3 17 CF 01 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x000001CF17B35F50, 16 bytes long.
 Data: <&#192;f&#179; &#207;           > C0 66 B3 17 CF 01 00 00 00 00 00 00 00 00 00 00 
{262} normal block at 0x000001CF17B357D0, 16 bytes long.
 Data: < <&#179; &#207;           > 00 3C B3 17 CF 01 00 00 00 00 00 00 00 00 00 00 
{261} normal block at 0x000001CF17B33C00, 40 bytes long.
 Data: <&#208;W&#179; &#207;   &#192;&#194;&#133; &#207;   > D0 57 B3 17 CF 01 00 00 C0 C2 85 19 CF 01 00 00 
{260} normal block at 0x000001CF17B36590, 16 bytes long.
 Data: <&#160;f&#179; &#207;           > A0 66 B3 17 CF 01 00 00 00 00 00 00 00 00 00 00 
{259} normal block at 0x000001CF17B36310, 16 bytes long.
 Data: <xf&#179; &#207;           > 78 66 B3 17 CF 01 00 00 00 00 00 00 00 00 00 00 
{258} normal block at 0x000001CF17B31410, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{257} normal block at 0x000001CF17B35910, 16 bytes long.
 Data: <Pf&#179; &#207;           > 50 66 B3 17 CF 01 00 00 00 00 00 00 00 00 00 00 
{256} normal block at 0x000001CF17B36650, 992 bytes long.
 Data: < Y&#179; &#207;     &#179; &#207;   > 10 59 B3 17 CF 01 00 00 10 14 B3 17 CF 01 00 00 
{92} normal block at 0x000001CF17B30C30, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{91} normal block at 0x000001CF17B2D450, 16 bytes long.
 Data: <p<&#179; &#207;           > 70 3C B3 17 CF 01 00 00 00 00 00 00 00 00 00 00 
{90} normal block at 0x000001CF17B33C70, 40 bytes long.
 Data: <P&#212;&#178; &#207;   0 &#179; &#207;   > 50 D4 B2 17 CF 01 00 00 30 0C B3 17 CF 01 00 00 
{69} normal block at 0x000001CF17B2DA40, 16 bytes long.
 Data: < &#234;&#221;&#187;&#247;           > 80 EA DD BB F7 7F 00 00 00 00 00 00 00 00 00 00 
{68} normal block at 0x000001CF17B2D720, 16 bytes long.
 Data: <@&#233;&#221;&#187;&#247;           > 40 E9 DD BB F7 7F 00 00 00 00 00 00 00 00 00 00 
{67} normal block at 0x000001CF17B2D9A0, 16 bytes long.
 Data: <&#248;W&#218;&#187;&#247;           > F8 57 DA BB F7 7F 00 00 00 00 00 00 00 00 00 00 
{66} normal block at 0x000001CF17B2D6D0, 16 bytes long.
 Data: <&#216;W&#218;&#187;&#247;           > D8 57 DA BB F7 7F 00 00 00 00 00 00 00 00 00 00 
{65} normal block at 0x000001CF17B2DCC0, 16 bytes long.
 Data: <P &#218;&#187;&#247;           > 50 04 DA BB F7 7F 00 00 00 00 00 00 00 00 00 00 
{64} normal block at 0x000001CF17B2D950, 16 bytes long.
 Data: <0 &#218;&#187;&#247;           > 30 04 DA BB F7 7F 00 00 00 00 00 00 00 00 00 00 
{63} normal block at 0x000001CF17B2D1D0, 16 bytes long.
 Data: <&#224; &#218;&#187;&#247;           > E0 02 DA BB F7 7F 00 00 00 00 00 00 00 00 00 00 
{62} normal block at 0x000001CF17B2D400, 16 bytes long.
 Data: <  &#218;&#187;&#247;           > 10 04 DA BB F7 7F 00 00 00 00 00 00 00 00 00 00 
{61} normal block at 0x000001CF17B2D770, 16 bytes long.
 Data: <p &#218;&#187;&#247;           > 70 04 DA BB F7 7F 00 00 00 00 00 00 00 00 00 00 
{60} normal block at 0x000001CF17B2D630, 16 bytes long.
 Data: < &#192;&#216;&#187;&#247;           > 18 C0 D8 BB F7 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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