Task 38608829
| Name | MCL1_A19_A25_r0_5-QUICO_ATM_OpenFF_MCL1-1-6-RND7081_0 |
| Workunit | 31562034 |
| Created | 14 Apr 2026, 18:50:31 UTC |
| Sent | 14 Apr 2026, 18:50:33 UTC |
| Report deadline | 19 Apr 2026, 18:50:33 UTC |
| Received | 14 Apr 2026, 19:59:20 UTC |
| Server state | Over |
| Outcome | Computation error |
| Client state | Compute error |
| Exit status | 195 (0x000000C3) EXIT_CHILD_FAILED |
| Computer ID | 565480 |
| Run time | 17 min 47 sec |
| CPU time | 12 min 19 sec |
| Validate state | Invalid |
| Credit | 0.00 |
| Device peak FLOPS | 19,181.29 GFLOPS |
| Application version | ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121) windows_x86_64 |
| Peak working set size | 440.82 MB |
| Peak swap size | 1.91 GB |
| Peak disk usage | 3.66 GB |
Stderr output
<core_client_version>8.2.8</core_client_version>
<![CDATA[
<message>
The operating system cannot run (null).
(0xc3) - exit code 195 (0xc3)</message>
<stderr_txt>
13:43:17 (1120): wrapper (7.9.26016): starting
13:43:17 (1120): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A19_A25_0.pdb
QB_A19_A25_0.xml
QB_A19_A25.inpcrd
QB_A19_A25_input.yaml
QB_A19_A25.pdb
QB_A19_A25.prmtop
QB_A19_A25_sys.xml
run.bat
run.sh
13:43:20 (1120): Library/usr/bin/tar.exe exited; CPU time 0.000000
13:43:20 (1120): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\2\Scripts' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\2\Scripts' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated. Import 'openmm' instead.
Traceback (most recent call last):
File "<frozen runpy>", line 198, in _run_module_as_main
File "<frozen runpy>", line 88, in _run_code
File "C:\ProgramData\BOINC\slots\2\Scripts\rbfe_production.exe\__main__.py", line 7, in <module>
File "C:\ProgramData\BOINC\slots\2\Lib\site-packages\atom_openmm\rbfe_production.py", line 33, in rbfe_production
rx.scheduleJobs()
File "C:\ProgramData\BOINC\slots\2\Lib\site-packages\atom_openmm\async_re.py", line 321, in scheduleJobs
self.transport.ProcessJobQueue(min_time,cycle_time)
File "C:\ProgramData\BOINC\slots\2\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 186, in ProcessJobQueue
self.isDone(repl,0)
File "C:\ProgramData\BOINC\slots\2\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 287, in isDone
retcode = self._update_replica(job)
^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ProgramData\BOINC\slots\2\Lib\site-packages\atom_openmm\local_openmm_transport.py", line 212, in _update_replica
pot = job['openmm_worker'].get_energy()
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ProgramData\BOINC\slots\2\Lib\site-packages\atom_openmm\ommworker.py", line 451, in get_energy
return self._worker_getenergy()
^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ProgramData\BOINC\slots\2\Lib\site-packages\atom_openmm\ommworker.py", line 400, in _worker_getenergy
state = self.simulation.context.getState(getEnergy = True)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "C:\ProgramData\BOINC\slots\2\Lib\site-packages\openmm\openmm.py", line 5022, in getState
state = _openmm.Context_getState(self, types, enforcePeriodicBox, groups_mask)
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
openmm.OpenMMException: Particle coordinate is NaN. For more information, see https://github.com/openmm/openmm/wiki/Frequently-Asked-Questions#nan
13:58:15 (1120): C:/Windows/system32/cmd.exe exited; CPU time 739.890625
13:58:15 (1120): app exit status: 0x16
13:58:15 (1120): called boinc_finish(195)
0 bytes in 0 Free Blocks.
726 bytes in 8 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 8997939 bytes.
Dumping objects ->
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{3835229} normal block at 0x000002A2D18B0810, 48 bytes long.
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{3835218} normal block at 0x000002A2D18B0FF0, 48 bytes long.
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{3835165} normal block at 0x000002A2CFE44BE0, 235 bytes long.
Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65
..\api\boinc_api.cpp(309) : {3835162} normal block at 0x000002A2CFE369A0, 8 bytes long.
Data: < áÏ¢ > 00 00 E1 CF A2 02 00 00
{3834555} normal block at 0x000002A2CFE44850, 235 bytes long.
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{3833945} normal block at 0x000002A2CFE36950, 8 bytes long.
Data: <ÐœŒÑ¢ > D0 9C 8C D1 A2 02 00 00
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{279} normal block at 0x000002A2CFE3CA20, 32 bytes long.
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{278} normal block at 0x000002A2CFE437D0, 16 bytes long.
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{273} normal block at 0x000002A2CFE43E10, 16 bytes long.
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{272} normal block at 0x000002A2CFE43190, 16 bytes long.
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{271} normal block at 0x000002A2CFE3C4E0, 32 bytes long.
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{252} normal block at 0x000002A2CFE3C840, 32 bytes long.
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{85} normal block at 0x000002A2CFE37170, 16 bytes long.
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{84} normal block at 0x000002A2CFE3B0F0, 40 bytes long.
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{63} normal block at 0x000002A2CFE36DB0, 16 bytes long.
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{62} normal block at 0x000002A2CFE363B0, 16 bytes long.
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{61} normal block at 0x000002A2CFE36D10, 16 bytes long.
Data: <øW6 ö > F8 57 36 08 F6 7F 00 00 00 00 00 00 00 00 00 00
{60} normal block at 0x000002A2CFE36D60, 16 bytes long.
Data: <ØW6 ö > D8 57 36 08 F6 7F 00 00 00 00 00 00 00 00 00 00
{59} normal block at 0x000002A2CFE36680, 16 bytes long.
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{58} normal block at 0x000002A2CFE36CC0, 16 bytes long.
Data: <0 6 ö > 30 04 36 08 F6 7F 00 00 00 00 00 00 00 00 00 00
{57} normal block at 0x000002A2CFE367C0, 16 bytes long.
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{56} normal block at 0x000002A2CFE36C70, 16 bytes long.
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{55} normal block at 0x000002A2CFE371C0, 16 bytes long.
Data: <p 6 ö > 70 04 36 08 F6 7F 00 00 00 00 00 00 00 00 00 00
{54} normal block at 0x000002A2CFE36B80, 16 bytes long.
Data: < À4 ö > 18 C0 34 08 F6 7F 00 00 00 00 00 00 00 00 00 00
Object dump complete.
</stderr_txt>
]]>
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