Task 38608680

Name p38_A04_A08_r0_3-QUICO_ATM_GAFF2_NAGL_p38-4-6-RND6019_0
Workunit 31561914
Created 14 Apr 2026, 17:43:57 UTC
Sent 14 Apr 2026, 17:44:05 UTC
Report deadline 19 Apr 2026, 17:44:05 UTC
Received 14 Apr 2026, 23:42:38 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 618180
Run time 5 hours 5 min 4 sec
CPU time 5 hours 5 min 4 sec
Validate state Valid
Credit 750,000.00
Device peak FLOPS 22,333.42 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 725.16 MB
Peak swap size 12.90 GB
Peak disk usage 3.08 GB

Stderr output

<core_client_version>8.2.9</core_client_version>
<![CDATA[
<stderr_txt>
13:40:43 (8896): wrapper (7.9.26016): starting
13:40:43 (8896): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A04_A08_0.pdb
QB_A04_A08_0.xml
QB_A04_A08.inpcrd
QB_A04_A08_input.yaml
QB_A04_A08.pdb
QB_A04_A08.prmtop
QB_A04_A08_sys.xml
run.bat
run.sh
13:40:44 (8896): Library/usr/bin/tar.exe exited; CPU time 0.000000
13:40:44 (8896): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
tar: r*/*.dcd: Cannot stat: No such file or directory
tar: Exiting with failure status due to previous errors
18:41:28 (8896): C:/Windows/system32/cmd.exe exited; CPU time 18304.390625
18:41:28 (8896): called boinc_finish(0)
0 bytes in 0 Free Blocks.
460 bytes in 8 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 321471195 bytes.
Dumping objects ->
{3835241} normal block at 0x0000019CC6C9D690, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835230} normal block at 0x0000019CC6C9DBD0, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835219} normal block at 0x0000019CC6C9D7E0, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{3835208} normal block at 0x0000019CC6C9D310, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835197} normal block at 0x0000019CC6C9DC40, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{3835166} normal block at 0x0000019CC8A0BED0, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835155} normal block at 0x0000019CC8A10060, 102 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
..\api\boinc_api.cpp(309) : {3835152} normal block at 0x0000019CC6C6EEA0, 8 bytes long.
 Data: <   &#199;&#156;   > 00 00 01 C7 9C 01 00 00 
{3834554} normal block at 0x0000019CC8A10950, 102 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
{3833969} normal block at 0x0000019CC6C6EFE0, 8 bytes long.
 Data: <&#240;&#217;&#190;&#198;&#156;   > F0 D9 BE C6 9C 01 00 00 
..\zip\boinc_zip.cpp(122) : {316} normal block at 0x0000019CC6C76B50, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{301} normal block at 0x0000019CC6BF2630, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{300} normal block at 0x0000019CC6C74100, 16 bytes long.
 Data: <&#248;;&#199;&#198;&#156;           > F8 3B C7 C6 9C 01 00 00 00 00 00 00 00 00 00 00 
{299} normal block at 0x0000019CC6C74470, 16 bytes long.
 Data: <&#208;;&#199;&#198;&#156;           > D0 3B C7 C6 9C 01 00 00 00 00 00 00 00 00 00 00 
{298} normal block at 0x0000019CC6C6D400, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{297} normal block at 0x0000019CC6C746A0, 16 bytes long.
 Data: <&#168;;&#199;&#198;&#156;           > A8 3B C7 C6 9C 01 00 00 00 00 00 00 00 00 00 00 
{296} normal block at 0x0000019CC6C743D0, 16 bytes long.
 Data: < ;&#199;&#198;&#156;           > 80 3B C7 C6 9C 01 00 00 00 00 00 00 00 00 00 00 
{295} normal block at 0x0000019CC6C74970, 16 bytes long.
 Data: <X;&#199;&#198;&#156;           > 58 3B C7 C6 9C 01 00 00 00 00 00 00 00 00 00 00 
{294} normal block at 0x0000019CC6C742E0, 16 bytes long.
 Data: <0;&#199;&#198;&#156;           > 30 3B C7 C6 9C 01 00 00 00 00 00 00 00 00 00 00 
{293} normal block at 0x0000019CC6C71C30, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{292} normal block at 0x0000019CC6C74650, 16 bytes long.
 Data: <&#216;4&#199;&#198;&#156;           > D8 34 C7 C6 9C 01 00 00 00 00 00 00 00 00 00 00 
{291} normal block at 0x0000019CC6C6D280, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{290} normal block at 0x0000019CC6C740B0, 16 bytes long.
 Data: <&#176;4&#199;&#198;&#156;           > B0 34 C7 C6 9C 01 00 00 00 00 00 00 00 00 00 00 
{288} normal block at 0x0000019CC6C74330, 16 bytes long.
 Data: < 4&#199;&#198;&#156;           > 88 34 C7 C6 9C 01 00 00 00 00 00 00 00 00 00 00 
{287} normal block at 0x0000019CC6C73DE0, 16 bytes long.
 Data: <`4&#199;&#198;&#156;           > 60 34 C7 C6 9C 01 00 00 00 00 00 00 00 00 00 00 
{286} normal block at 0x0000019CC6C74290, 16 bytes long.
 Data: <84&#199;&#198;&#156;           > 38 34 C7 C6 9C 01 00 00 00 00 00 00 00 00 00 00 
{285} normal block at 0x0000019CC6C74880, 16 bytes long.
 Data: < 4&#199;&#198;&#156;           > 10 34 C7 C6 9C 01 00 00 00 00 00 00 00 00 00 00 
{284} normal block at 0x0000019CC6C73E30, 16 bytes long.
 Data: <&#232;3&#199;&#198;&#156;           > E8 33 C7 C6 9C 01 00 00 00 00 00 00 00 00 00 00 
{283} normal block at 0x0000019CC6C6D220, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{282} normal block at 0x0000019CC6C74BA0, 16 bytes long.
 Data: <&#192;3&#199;&#198;&#156;           > C0 33 C7 C6 9C 01 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x0000019CC6C733C0, 320 bytes long.
 Data: <&#160;K&#199;&#198;&#156;    &#210;&#198;&#198;&#156;   > A0 4B C7 C6 9C 01 00 00 20 D2 C6 C6 9C 01 00 00 
{280} normal block at 0x0000019CC6C73D40, 16 bytes long.
 Data: < ;&#199;&#198;&#156;           > 10 3B C7 C6 9C 01 00 00 00 00 00 00 00 00 00 00 
{279} normal block at 0x0000019CC6C74380, 16 bytes long.
 Data: <&#232;:&#199;&#198;&#156;           > E8 3A C7 C6 9C 01 00 00 00 00 00 00 00 00 00 00 
{278} normal block at 0x0000019CC6C6DB20, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{277} normal block at 0x0000019CC6C74A10, 16 bytes long.
 Data: <&#192;:&#199;&#198;&#156;           > C0 3A C7 C6 9C 01 00 00 00 00 00 00 00 00 00 00 
{276} normal block at 0x0000019CC6C6D880, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{275} normal block at 0x0000019CC6C74920, 16 bytes long.
 Data: < :&#199;&#198;&#156;           > 08 3A C7 C6 9C 01 00 00 00 00 00 00 00 00 00 00 
{274} normal block at 0x0000019CC6C73D90, 16 bytes long.
 Data: <&#224;9&#199;&#198;&#156;           > E0 39 C7 C6 9C 01 00 00 00 00 00 00 00 00 00 00 
{273} normal block at 0x0000019CC6C74420, 16 bytes long.
 Data: <&#184;9&#199;&#198;&#156;           > B8 39 C7 C6 9C 01 00 00 00 00 00 00 00 00 00 00 
{272} normal block at 0x0000019CC6C6E860, 16 bytes long.
 Data: < 9&#199;&#198;&#156;           > 90 39 C7 C6 9C 01 00 00 00 00 00 00 00 00 00 00 
{271} normal block at 0x0000019CC6C6EBD0, 16 bytes long.
 Data: <h9&#199;&#198;&#156;           > 68 39 C7 C6 9C 01 00 00 00 00 00 00 00 00 00 00 
{270} normal block at 0x0000019CC6C6E810, 16 bytes long.
 Data: <@9&#199;&#198;&#156;           > 40 39 C7 C6 9C 01 00 00 00 00 00 00 00 00 00 00 
{268} normal block at 0x0000019CC6C6EA40, 16 bytes long.
 Data: <p!&#199;&#198;&#156;           > 70 21 C7 C6 9C 01 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x0000019CC6C72170, 40 bytes long.
 Data: <@&#234;&#198;&#198;&#156;   &#208;&#190;&#160;&#200;&#156;   > 40 EA C6 C6 9C 01 00 00 D0 BE A0 C8 9C 01 00 00 
{266} normal block at 0x0000019CC6C6E590, 16 bytes long.
 Data: < 9&#199;&#198;&#156;           > 20 39 C7 C6 9C 01 00 00 00 00 00 00 00 00 00 00 
{265} normal block at 0x0000019CC6C6F0D0, 16 bytes long.
 Data: <&#248;8&#199;&#198;&#156;           > F8 38 C7 C6 9C 01 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x0000019CC6C6D160, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{263} normal block at 0x0000019CC6C6E9F0, 16 bytes long.
 Data: <&#208;8&#199;&#198;&#156;           > D0 38 C7 C6 9C 01 00 00 00 00 00 00 00 00 00 00 
{262} normal block at 0x0000019CC6C738D0, 992 bytes long.
 Data: <&#240;&#233;&#198;&#198;&#156;   `&#209;&#198;&#198;&#156;   > F0 E9 C6 C6 9C 01 00 00 60 D1 C6 C6 9C 01 00 00 
{98} normal block at 0x0000019CC6C6DB80, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{97} normal block at 0x0000019CC6C6E400, 16 bytes long.
 Data: <&#224;!&#199;&#198;&#156;           > E0 21 C7 C6 9C 01 00 00 00 00 00 00 00 00 00 00 
{96} normal block at 0x0000019CC6C721E0, 40 bytes long.
 Data: < &#228;&#198;&#198;&#156;    &#219;&#198;&#198;&#156;   > 00 E4 C6 C6 9C 01 00 00 80 DB C6 C6 9C 01 00 00 
{75} normal block at 0x0000019CC6C6E720, 16 bytes long.
 Data: < &#234;&#250;&#239;&#246;           > 80 EA FA EF F6 7F 00 00 00 00 00 00 00 00 00 00 
{74} normal block at 0x0000019CC6C6E1D0, 16 bytes long.
 Data: <@&#233;&#250;&#239;&#246;           > 40 E9 FA EF F6 7F 00 00 00 00 00 00 00 00 00 00 
{73} normal block at 0x0000019CC6C6E680, 16 bytes long.
 Data: <&#248;W&#247;&#239;&#246;           > F8 57 F7 EF F6 7F 00 00 00 00 00 00 00 00 00 00 
{72} normal block at 0x0000019CC6C6EC70, 16 bytes long.
 Data: <&#216;W&#247;&#239;&#246;           > D8 57 F7 EF F6 7F 00 00 00 00 00 00 00 00 00 00 
{71} normal block at 0x0000019CC6C6E220, 16 bytes long.
 Data: <P &#247;&#239;&#246;           > 50 04 F7 EF F6 7F 00 00 00 00 00 00 00 00 00 00 
{70} normal block at 0x0000019CC6C6F030, 16 bytes long.
 Data: <0 &#247;&#239;&#246;           > 30 04 F7 EF F6 7F 00 00 00 00 00 00 00 00 00 00 
{69} normal block at 0x0000019CC6C6EF90, 16 bytes long.
 Data: <&#224; &#247;&#239;&#246;           > E0 02 F7 EF F6 7F 00 00 00 00 00 00 00 00 00 00 
{68} normal block at 0x0000019CC6C6E180, 16 bytes long.
 Data: <  &#247;&#239;&#246;           > 10 04 F7 EF F6 7F 00 00 00 00 00 00 00 00 00 00 
{67} normal block at 0x0000019CC6C6E7C0, 16 bytes long.
 Data: <p &#247;&#239;&#246;           > 70 04 F7 EF F6 7F 00 00 00 00 00 00 00 00 00 00 
{66} normal block at 0x0000019CC6C6EA90, 16 bytes long.
 Data: < &#192;&#245;&#239;&#246;           > 18 C0 F5 EF F6 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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