Task 38607779

Name TYK2_A06_A07_r0_4-QUICO_ATM_OpenFF_TYK2-1-6-RND4437_0
Workunit 31561219
Created 14 Apr 2026, 13:45:12 UTC
Sent 14 Apr 2026, 13:45:13 UTC
Report deadline 19 Apr 2026, 13:45:13 UTC
Received 14 Apr 2026, 22:09:07 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 651831
Run time 4 hours 41 min 35 sec
CPU time 4 hours 28 min 3 sec
Validate state Valid
Credit 750,000.00
Device peak FLOPS 19,474.73 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 734.17 MB
Peak swap size 12.93 GB
Peak disk usage 3.06 GB

Stderr output

<core_client_version>8.2.9</core_client_version>
<![CDATA[
<stderr_txt>
12:18:39 (15344): wrapper (7.9.26016): starting
12:18:39 (15344): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A06_A07_0.pdb
QB_A06_A07_0.xml
QB_A06_A07.inpcrd
QB_A06_A07_input.yaml
QB_A06_A07.pdb
QB_A06_A07.prmtop
QB_A06_A07_sys.xml
run.bat
run.sh
12:18:41 (15344): Library/usr/bin/tar.exe exited; CPU time 0.000000
12:18:41 (15344): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
Detected memory leaks!
Dumping objects ->
..\api\boinc_api.cpp(309) : {3835434} normal block at 0x000001F8317CD760, 8 bytes long.
 Data: <   1    > 00 00 CA 31 F8 01 00 00 
..\lib\diagnostics_win.cpp(417) : {3833958} normal block at 0x000001F833593890, 1080 bytes long.
 Data: <P"              > 50 22 00 00 CD CD CD CD 84 02 00 00 00 00 00 00 
..\zip\boinc_zip.cpp(122) : {311} normal block at 0x000001F8317C0C60, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
Object dump complete.
13:28:10 (12512): wrapper (7.9.26016): starting
13:28:10 (12512): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
A subdirectory or file C:\ProgramData\BOINC\slots\0\tmp already exists.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
18:08:35 (12512): C:/Windows/system32/cmd.exe exited; CPU time 16083.578125
18:08:35 (12512): called boinc_finish(0)
0 bytes in 0 Free Blocks.
536 bytes in 8 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 236988846 bytes.
Dumping objects ->
{1869} normal block at 0x000001E0D3E23CA0, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{1858} normal block at 0x000001E0D3E23A70, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{1847} normal block at 0x000001E0D3E23B50, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{1836} normal block at 0x000001E0D3E23DF0, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{1825} normal block at 0x000001E0D3E23A00, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{1794} normal block at 0x000001E0D3E0F2C0, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{1783} normal block at 0x000001E0D3E0BFE0, 140 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
..\api\boinc_api.cpp(309) : {1780} normal block at 0x000001E0D3E25100, 8 bytes long.
 Data: <  K     > 00 00 4B D4 E0 01 00 00 
{1034} normal block at 0x000001E0D3E0C0E0, 140 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
{305} normal block at 0x000001E0D3E25560, 8 bytes long.
 Data: < Y      > F0 59 E2 D3 E0 01 00 00 
{296} normal block at 0x000001E0D3E126B0, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{295} normal block at 0x000001E0D3E25060, 16 bytes long.
 Data: < X              > F8 58 E2 D3 E0 01 00 00 00 00 00 00 00 00 00 00 
{294} normal block at 0x000001E0D3E24980, 16 bytes long.
 Data: < X              > D0 58 E2 D3 E0 01 00 00 00 00 00 00 00 00 00 00 
{293} normal block at 0x000001E0D3E214B0, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{292} normal block at 0x000001E0D3E24660, 16 bytes long.
 Data: < X              > A8 58 E2 D3 E0 01 00 00 00 00 00 00 00 00 00 00 
{291} normal block at 0x000001E0D3E254C0, 16 bytes long.
 Data: < X              > 80 58 E2 D3 E0 01 00 00 00 00 00 00 00 00 00 00 
{290} normal block at 0x000001E0D3E24F20, 16 bytes long.
 Data: <XX              > 58 58 E2 D3 E0 01 00 00 00 00 00 00 00 00 00 00 
{289} normal block at 0x000001E0D3E24E80, 16 bytes long.
 Data: <0X              > 30 58 E2 D3 E0 01 00 00 00 00 00 00 00 00 00 00 
{288} normal block at 0x000001E0D3E23C30, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{287} normal block at 0x000001E0D3E24E30, 16 bytes long.
 Data: <X               > 58 07 E1 D3 E0 01 00 00 00 00 00 00 00 00 00 00 
{286} normal block at 0x000001E0D3E213F0, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{285} normal block at 0x000001E0D3E25470, 16 bytes long.
 Data: <0               > 30 07 E1 D3 E0 01 00 00 00 00 00 00 00 00 00 00 
{283} normal block at 0x000001E0D3E24ED0, 16 bytes long.
 Data: <                > 08 07 E1 D3 E0 01 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x000001E0D3E24B60, 16 bytes long.
 Data: <                > E0 06 E1 D3 E0 01 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x000001E0D3E24C50, 16 bytes long.
 Data: <                > B8 06 E1 D3 E0 01 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x000001E0D3E25010, 16 bytes long.
 Data: <                > 90 06 E1 D3 E0 01 00 00 00 00 00 00 00 00 00 00 
{279} normal block at 0x000001E0D3E248E0, 16 bytes long.
 Data: <h               > 68 06 E1 D3 E0 01 00 00 00 00 00 00 00 00 00 00 
{278} normal block at 0x000001E0D3E20E50, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{277} normal block at 0x000001E0D3E25380, 16 bytes long.
 Data: <@               > 40 06 E1 D3 E0 01 00 00 00 00 00 00 00 00 00 00 
{276} normal block at 0x000001E0D3E10640, 320 bytes long.
 Data: < S      P       > 80 53 E2 D3 E0 01 00 00 50 0E E2 D3 E0 01 00 00 
{275} normal block at 0x000001E0D3E25510, 16 bytes long.
 Data: < X              > 10 58 E2 D3 E0 01 00 00 00 00 00 00 00 00 00 00 
{274} normal block at 0x000001E0D3E250B0, 16 bytes long.
 Data: < W              > E8 57 E2 D3 E0 01 00 00 00 00 00 00 00 00 00 00 
{273} normal block at 0x000001E0D3E212D0, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{272} normal block at 0x000001E0D3E24DE0, 16 bytes long.
 Data: < W              > C0 57 E2 D3 E0 01 00 00 00 00 00 00 00 00 00 00 
{271} normal block at 0x000001E0D3E21750, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{270} normal block at 0x000001E0D3E24FC0, 16 bytes long.
 Data: < W              > 08 57 E2 D3 E0 01 00 00 00 00 00 00 00 00 00 00 
{269} normal block at 0x000001E0D3E24890, 16 bytes long.
 Data: < V              > E0 56 E2 D3 E0 01 00 00 00 00 00 00 00 00 00 00 
{268} normal block at 0x000001E0D3E24D90, 16 bytes long.
 Data: < V              > B8 56 E2 D3 E0 01 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x000001E0D3E24F70, 16 bytes long.
 Data: < V              > 90 56 E2 D3 E0 01 00 00 00 00 00 00 00 00 00 00 
{266} normal block at 0x000001E0D3E252E0, 16 bytes long.
 Data: <hV              > 68 56 E2 D3 E0 01 00 00 00 00 00 00 00 00 00 00 
{265} normal block at 0x000001E0D3E25330, 16 bytes long.
 Data: <@V              > 40 56 E2 D3 E0 01 00 00 00 00 00 00 00 00 00 00 
{263} normal block at 0x000001E0D3E24AC0, 16 bytes long.
 Data: < @              > 20 40 E2 D3 E0 01 00 00 00 00 00 00 00 00 00 00 
{262} normal block at 0x000001E0D3E24020, 40 bytes long.
 Data: < J              > C0 4A E2 D3 E0 01 00 00 C0 F2 E0 D3 E0 01 00 00 
{261} normal block at 0x000001E0D3E24C00, 16 bytes long.
 Data: < V              > 20 56 E2 D3 E0 01 00 00 00 00 00 00 00 00 00 00 
{260} normal block at 0x000001E0D3E24750, 16 bytes long.
 Data: < U              > F8 55 E2 D3 E0 01 00 00 00 00 00 00 00 00 00 00 
{259} normal block at 0x000001E0D3E21450, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{258} normal block at 0x000001E0D3E247A0, 16 bytes long.
 Data: < U              > D0 55 E2 D3 E0 01 00 00 00 00 00 00 00 00 00 00 
{257} normal block at 0x000001E0D3E255D0, 992 bytes long.
 Data: < G      P       > A0 47 E2 D3 E0 01 00 00 50 14 E2 D3 E0 01 00 00 
{93} normal block at 0x000001E0D3E20EB0, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{92} normal block at 0x000001E0D3E1D580, 16 bytes long.
 Data: <                > F0 D2 E0 D3 E0 01 00 00 00 00 00 00 00 00 00 00 
{91} normal block at 0x000001E0D3E0D2F0, 40 bytes long.
 Data: <                > 80 D5 E1 D3 E0 01 00 00 B0 0E E2 D3 E0 01 00 00 
{70} normal block at 0x000001E0D3E1DC60, 16 bytes long.
 Data: <   I            > 80 EA 01 49 F7 7F 00 00 00 00 00 00 00 00 00 00 
{69} normal block at 0x000001E0D3E1DC10, 16 bytes long.
 Data: <@  I            > 40 E9 01 49 F7 7F 00 00 00 00 00 00 00 00 00 00 
{68} normal block at 0x000001E0D3E1DBC0, 16 bytes long.
 Data: < W H            > F8 57 FE 48 F7 7F 00 00 00 00 00 00 00 00 00 00 
{67} normal block at 0x000001E0D3E1D490, 16 bytes long.
 Data: < W H            > D8 57 FE 48 F7 7F 00 00 00 00 00 00 00 00 00 00 
{66} normal block at 0x000001E0D3E1DB70, 16 bytes long.
 Data: <P  H            > 50 04 FE 48 F7 7F 00 00 00 00 00 00 00 00 00 00 
{65} normal block at 0x000001E0D3E1DDF0, 16 bytes long.
 Data: <0  H            > 30 04 FE 48 F7 7F 00 00 00 00 00 00 00 00 00 00 
{64} normal block at 0x000001E0D3E1D120, 16 bytes long.
 Data: <   H            > E0 02 FE 48 F7 7F 00 00 00 00 00 00 00 00 00 00 
{63} normal block at 0x000001E0D3E1D080, 16 bytes long.
 Data: <   H            > 10 04 FE 48 F7 7F 00 00 00 00 00 00 00 00 00 00 
{62} normal block at 0x000001E0D3E1DD00, 16 bytes long.
 Data: <p  H            > 70 04 FE 48 F7 7F 00 00 00 00 00 00 00 00 00 00 
{61} normal block at 0x000001E0D3E1DA80, 16 bytes long.
 Data: <   H            > 18 C0 FC 48 F7 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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