Task 38605663

Name tnks2_A09_A15_r0_2-QUICO_ATM_GAFF2_NAGL_TNKS2-1-6-RND1396_0
Workunit 31559504
Created 13 Apr 2026, 23:43:13 UTC
Sent 13 Apr 2026, 23:43:15 UTC
Report deadline 18 Apr 2026, 23:43:15 UTC
Received 14 Apr 2026, 1:29:55 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 650482
Run time 1 hours 46 min 40 sec
CPU time 1 hours 47 min 35 sec
Validate state Valid
Credit 750,000.00
Device peak FLOPS 62,982.38 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 590.21 MB
Peak swap size 13.11 GB
Peak disk usage 2.94 GB

Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<stderr_txt>
01:43:50 (5172): wrapper (7.9.26016): starting
01:43:50 (5172): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A09_A15_0.pdb
QB_A09_A15_0.xml
QB_A09_A15.inpcrd
QB_A09_A15_input.yaml
QB_A09_A15.pdb
QB_A09_A15.prmtop
QB_A09_A15_sys.xml
run.bat
run.sh
01:43:51 (5172): Library/usr/bin/tar.exe exited; CPU time 0.000000
01:43:51 (5172): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\6\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\6\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
03:29:38 (5172): C:/Windows/system32/cmd.exe exited; CPU time 6455.968750
03:29:38 (5172): called boinc_finish(0)
0 bytes in 0 Free Blocks.
460 bytes in 8 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 86095285 bytes.
Dumping objects ->
{3835629} normal block at 0x000001BAE37E7560, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835618} normal block at 0x000001BAE37E74F0, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835607} normal block at 0x000001BAE37E7480, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{3835596} normal block at 0x000001BAE37E7410, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835585} normal block at 0x000001BAE37E73A0, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{3835554} normal block at 0x000001BAE56885B0, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835543} normal block at 0x000001BAE569EDC0, 102 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
..\api\boinc_api.cpp(309) : {3835540} normal block at 0x000001BAE37DDE30, 8 bytes long.
 Data: <  &#221;&#227;&#186;   > 00 00 DD E3 BA 01 00 00 
{3834716} normal block at 0x000001BAE569F080, 102 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
{3833955} normal block at 0x000001BAE37DE510, 8 bytes long.
 Data: <p&#231;Q&#229;&#186;   > 70 E7 51 E5 BA 01 00 00 
..\zip\boinc_zip.cpp(122) : {309} normal block at 0x000001BAE37D1500, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{294} normal block at 0x000001BAE37D28A0, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{293} normal block at 0x000001BAE37E63A0, 16 bytes long.
 Data: <  ~&#227;&#186;           > 08 0E 7E E3 BA 01 00 00 00 00 00 00 00 00 00 00 
{292} normal block at 0x000001BAE37E6440, 16 bytes long.
 Data: <&#224; ~&#227;&#186;           > E0 0D 7E E3 BA 01 00 00 00 00 00 00 00 00 00 00 
{291} normal block at 0x000001BAE37E20F0, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{290} normal block at 0x000001BAE37E6300, 16 bytes long.
 Data: <&#184; ~&#227;&#186;           > B8 0D 7E E3 BA 01 00 00 00 00 00 00 00 00 00 00 
{289} normal block at 0x000001BAE37E6170, 16 bytes long.
 Data: <  ~&#227;&#186;           > 90 0D 7E E3 BA 01 00 00 00 00 00 00 00 00 00 00 
{288} normal block at 0x000001BAE37E60D0, 16 bytes long.
 Data: <h ~&#227;&#186;           > 68 0D 7E E3 BA 01 00 00 00 00 00 00 00 00 00 00 
{287} normal block at 0x000001BAE37E65D0, 16 bytes long.
 Data: <@ ~&#227;&#186;           > 40 0D 7E E3 BA 01 00 00 00 00 00 00 00 00 00 00 
{286} normal block at 0x000001BAE37E7330, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{285} normal block at 0x000001BAE37E6FD0, 16 bytes long.
 Data: <X }&#227;&#186;           > 58 0E 7D E3 BA 01 00 00 00 00 00 00 00 00 00 00 
{284} normal block at 0x000001BAE37E1970, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{283} normal block at 0x000001BAE37E6F30, 16 bytes long.
 Data: <0 }&#227;&#186;           > 30 0E 7D E3 BA 01 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x000001BAE37E6530, 16 bytes long.
 Data: <  }&#227;&#186;           > 08 0E 7D E3 BA 01 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x000001BAE37E6EE0, 16 bytes long.
 Data: <&#224; }&#227;&#186;           > E0 0D 7D E3 BA 01 00 00 00 00 00 00 00 00 00 00 
{279} normal block at 0x000001BAE37E6760, 16 bytes long.
 Data: <&#184; }&#227;&#186;           > B8 0D 7D E3 BA 01 00 00 00 00 00 00 00 00 00 00 
{278} normal block at 0x000001BAE37E6260, 16 bytes long.
 Data: <  }&#227;&#186;           > 90 0D 7D E3 BA 01 00 00 00 00 00 00 00 00 00 00 
{277} normal block at 0x000001BAE37E6F80, 16 bytes long.
 Data: <h }&#227;&#186;           > 68 0D 7D E3 BA 01 00 00 00 00 00 00 00 00 00 00 
{276} normal block at 0x000001BAE37E1610, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{275} normal block at 0x000001BAE37E6E90, 16 bytes long.
 Data: <@ }&#227;&#186;           > 40 0D 7D E3 BA 01 00 00 00 00 00 00 00 00 00 00 
{274} normal block at 0x000001BAE37D0D40, 320 bytes long.
 Data: < n~&#227;&#186;     ~&#227;&#186;   > 90 6E 7E E3 BA 01 00 00 10 16 7E E3 BA 01 00 00 
{273} normal block at 0x000001BAE37E6490, 16 bytes long.
 Data: <  ~&#227;&#186;           > 20 0D 7E E3 BA 01 00 00 00 00 00 00 00 00 00 00 
{272} normal block at 0x000001BAE37E6E40, 16 bytes long.
 Data: <&#248; ~&#227;&#186;           > F8 0C 7E E3 BA 01 00 00 00 00 00 00 00 00 00 00 
{271} normal block at 0x000001BAE37E1B50, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{270} normal block at 0x000001BAE37E64E0, 16 bytes long.
 Data: <&#208; ~&#227;&#186;           > D0 0C 7E E3 BA 01 00 00 00 00 00 00 00 00 00 00 
{269} normal block at 0x000001BAE37E13D0, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{268} normal block at 0x000001BAE37E68F0, 16 bytes long.
 Data: <  ~&#227;&#186;           > 18 0C 7E E3 BA 01 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x000001BAE37E6D50, 16 bytes long.
 Data: <&#240; ~&#227;&#186;           > F0 0B 7E E3 BA 01 00 00 00 00 00 00 00 00 00 00 
{266} normal block at 0x000001BAE37E6990, 16 bytes long.
 Data: <&#200; ~&#227;&#186;           > C8 0B 7E E3 BA 01 00 00 00 00 00 00 00 00 00 00 
{265} normal block at 0x000001BAE37E6DA0, 16 bytes long.
 Data: <&#160; ~&#227;&#186;           > A0 0B 7E E3 BA 01 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x000001BAE37E6CB0, 16 bytes long.
 Data: <x ~&#227;&#186;           > 78 0B 7E E3 BA 01 00 00 00 00 00 00 00 00 00 00 
{263} normal block at 0x000001BAE37E67B0, 16 bytes long.
 Data: <P ~&#227;&#186;           > 50 0B 7E E3 BA 01 00 00 00 00 00 00 00 00 00 00 
{261} normal block at 0x000001BAE37E6350, 16 bytes long.
 Data: <@&#200;|&#227;&#186;           > 40 C8 7C E3 BA 01 00 00 00 00 00 00 00 00 00 00 
{260} normal block at 0x000001BAE37CC840, 40 bytes long.
 Data: <Pc~&#227;&#186;   &#176;&#133;h&#229;&#186;   > 50 63 7E E3 BA 01 00 00 B0 85 68 E5 BA 01 00 00 
{259} normal block at 0x000001BAE37E6080, 16 bytes long.
 Data: <0 ~&#227;&#186;           > 30 0B 7E E3 BA 01 00 00 00 00 00 00 00 00 00 00 
{258} normal block at 0x000001BAE37E6A80, 16 bytes long.
 Data: <  ~&#227;&#186;           > 08 0B 7E E3 BA 01 00 00 00 00 00 00 00 00 00 00 
{257} normal block at 0x000001BAE37E1D30, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{256} normal block at 0x000001BAE37E6210, 16 bytes long.
 Data: <&#224; ~&#227;&#186;           > E0 0A 7E E3 BA 01 00 00 00 00 00 00 00 00 00 00 
{255} normal block at 0x000001BAE37E0AE0, 992 bytes long.
 Data: < b~&#227;&#186;   0 ~&#227;&#186;   > 10 62 7E E3 BA 01 00 00 30 1D 7E E3 BA 01 00 00 
{91} normal block at 0x000001BAE37E14F0, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{90} normal block at 0x000001BAE37DEB00, 16 bytes long.
 Data: < &#221;|&#227;&#186;           > 90 DD 7C E3 BA 01 00 00 00 00 00 00 00 00 00 00 
{89} normal block at 0x000001BAE37CDD90, 40 bytes long.
 Data: < &#235;}&#227;&#186;   &#240; ~&#227;&#186;   > 00 EB 7D E3 BA 01 00 00 F0 14 7E E3 BA 01 00 00 
{68} normal block at 0x000001BAE37DDDE0, 16 bytes long.
 Data: < &#234;lg&#246;           > 80 EA 6C 67 F6 7F 00 00 00 00 00 00 00 00 00 00 
{67} normal block at 0x000001BAE37DE240, 16 bytes long.
 Data: <@&#233;lg&#246;           > 40 E9 6C 67 F6 7F 00 00 00 00 00 00 00 00 00 00 
{66} normal block at 0x000001BAE37DE470, 16 bytes long.
 Data: <&#248;Wig&#246;           > F8 57 69 67 F6 7F 00 00 00 00 00 00 00 00 00 00 
{65} normal block at 0x000001BAE37DDFC0, 16 bytes long.
 Data: <&#216;Wig&#246;           > D8 57 69 67 F6 7F 00 00 00 00 00 00 00 00 00 00 
{64} normal block at 0x000001BAE37DDD40, 16 bytes long.
 Data: <P ig&#246;           > 50 04 69 67 F6 7F 00 00 00 00 00 00 00 00 00 00 
{63} normal block at 0x000001BAE37DE4C0, 16 bytes long.
 Data: <0 ig&#246;           > 30 04 69 67 F6 7F 00 00 00 00 00 00 00 00 00 00 
{62} normal block at 0x000001BAE37DE420, 16 bytes long.
 Data: <&#224; ig&#246;           > E0 02 69 67 F6 7F 00 00 00 00 00 00 00 00 00 00 
{61} normal block at 0x000001BAE37DE5B0, 16 bytes long.
 Data: <  ig&#246;           > 10 04 69 67 F6 7F 00 00 00 00 00 00 00 00 00 00 
{60} normal block at 0x000001BAE37DE290, 16 bytes long.
 Data: <p ig&#246;           > 70 04 69 67 F6 7F 00 00 00 00 00 00 00 00 00 00 
{59} normal block at 0x000001BAE37DE1A0, 16 bytes long.
 Data: < &#192;gg&#246;           > 18 C0 67 67 F6 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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