Task 38604425

Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<message>
Das Betriebssystem kann (null) nicht ausf�hren.
 (0xc3) - exit code 195 (0xc3)</message>
<stderr_txt>
15:05:38 (5604): wrapper (7.9.26016): starting
15:05:38 (5604): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A08_A10_0.pdb
QB_A08_A10_0.xml
QB_A08_A10.inpcrd
QB_A08_A10_input.yaml
QB_A08_A10.pdb
QB_A08_A10.prmtop
QB_A08_A10_sys.xml
run.bat
run.sh
15:05:39 (5604): Library/usr/bin/tar.exe exited; CPU time 0.000000
15:05:39 (5604): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
15:08:13 (12572): wrapper (7.9.26016): starting
15:08:13 (12572): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
Ein Unterverzeichnis oder eine Datei mit dem Namen "C:\ProgramData\BOINC\slots\0\tmp" existiert bereits.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
11:43:27 (11060): wrapper (7.9.26016): starting
11:43:27 (11060): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A08_A10_0.pdb
QB_A08_A10_0.xml
QB_A08_A10.inpcrd
QB_A08_A10_input.yaml
QB_A08_A10.pdb
QB_A08_A10.prmtop
QB_A08_A10_sys.xml
run.bat
run.sh
11:43:28 (11060): Library/usr/bin/tar.exe exited; CPU time 0.000000
11:43:28 (11060): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
Ein Unterverzeichnis oder eine Datei mit dem Namen "C:\ProgramData\BOINC\slots\0\tmp" existiert bereits.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
Traceback (most recent call last):
  File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\openmm_async_re.py", line 432, in __init__
    replica = OMMReplicaATM(i, self.basename, self.service_worker, self.logger, self.keywords)
              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\ommreplica.py", line 41, in __init__
    self.load_checkpoint()
  File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\ommreplica.py", line 79, in load_checkpoint
    self.worker.simulation.loadState(ckptfile)
  File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\openmm\app\simulation.py", line 363, in loadState
    self.context.setState(mm.XmlSerializer.deserialize(xml))
                          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\openmm\openmm.py", line 19627, in deserialize
    return XmlSerializer._deserializeState(inputString)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\openmm\openmm.py", line 19590, in _deserializeState
    return _openmm.XmlSerializer__deserializeState(inputString)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
openmm.OpenMMException: Unknown property 'z' in node '
		'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "<frozen runpy>", line 198, in _run_module_as_main
  File "<frozen runpy>", line 88, in _run_code
  File "C:\ProgramData\BOINC\slots\0\Scripts\rbfe_production.exe\__main__.py", line 7, in <module>
  File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\rbfe_production.py", line 29, in rbfe_production
    rx = openmm_job_RBFE(
         ^^^^^^^^^^^^^^^^
  File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\openmm_async_re.py", line 434, in __init__
    self._exit("Error when creating replica.")
  File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\async_re.py", line 69, in _exit
    self.checkpointJob()
  File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\openmm_async_re.py", line 48, in checkpointJob
    self.update_state_of_replica(repl)
  File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\openmm_async_re.py", line 86, in update_state_of_replica
    stateid = self.status[repl]['stateid_current']
              ^^^^^^^^^^^
  File "C:\ProgramData\BOINC\slots\0\Lib\site-packages\atom_openmm\async_re.py", line 131, in __getattribute__
    return object.__getattribute__(self,name)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
AttributeError: 'openmm_job_RBFE' object has no attribute 'status'
11:43:48 (11060): C:/Windows/system32/cmd.exe exited; CPU time 2.437500
11:43:48 (11060): app exit status: 0x16
11:43:48 (11060): called boinc_finish(195)
0 bytes in 0 Free Blocks.
538 bytes in 8 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 346721 bytes.
Dumping objects ->
{1568} normal block at 0x000001F4E286C3C0, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{1557} normal block at 0x000001F4E286C350, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{1546} normal block at 0x000001F4E286C510, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{1535} normal block at 0x000001F4E286C200, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{1524} normal block at 0x000001F4E286C190, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{1493} normal block at 0x000001F4E285AE70, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{1482} normal block at 0x000001F4E2853030, 141 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
..\api\boinc_api.cpp(309) : {1479} normal block at 0x000001F4E2871C70, 8 bytes long.
 Data: <        > 00 00 17 E4 F4 01 00 00 
{881} normal block at 0x000001F4E2855AB0, 141 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
{299} normal block at 0x000001F4E2871770, 8 bytes long.
 Data: <`,      > 60 2C 87 E2 F4 01 00 00 
{290} normal block at 0x000001F4E285C400, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{289} normal block at 0x000001F4E28724E0, 16 bytes long.
 Data: <h+              > 68 2B 87 E2 F4 01 00 00 00 00 00 00 00 00 00 00 
{288} normal block at 0x000001F4E2871F40, 16 bytes long.
 Data: <@+              > 40 2B 87 E2 F4 01 00 00 00 00 00 00 00 00 00 00 
{287} normal block at 0x000001F4E286A0C0, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{286} normal block at 0x000001F4E2872490, 16 bytes long.
 Data: < +              > 18 2B 87 E2 F4 01 00 00 00 00 00 00 00 00 00 00 
{285} normal block at 0x000001F4E2872440, 16 bytes long.
 Data: < *              > F0 2A 87 E2 F4 01 00 00 00 00 00 00 00 00 00 00 
{284} normal block at 0x000001F4E28723F0, 16 bytes long.
 Data: < *              > C8 2A 87 E2 F4 01 00 00 00 00 00 00 00 00 00 00 
{283} normal block at 0x000001F4E2871EA0, 16 bytes long.
 Data: < *              > A0 2A 87 E2 F4 01 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x000001F4E286BEF0, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{281} normal block at 0x000001F4E2872530, 16 bytes long.
 Data: <h               > 68 15 87 E2 F4 01 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x000001F4E2869FA0, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{279} normal block at 0x000001F4E2871E50, 16 bytes long.
 Data: <@               > 40 15 87 E2 F4 01 00 00 00 00 00 00 00 00 00 00 
{277} normal block at 0x000001F4E2871E00, 16 bytes long.
 Data: <                > 18 15 87 E2 F4 01 00 00 00 00 00 00 00 00 00 00 
{276} normal block at 0x000001F4E2871720, 16 bytes long.
 Data: <                > F0 14 87 E2 F4 01 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x000001F4E2871C20, 16 bytes long.
 Data: <                > C8 14 87 E2 F4 01 00 00 00 00 00 00 00 00 00 00 
{274} normal block at 0x000001F4E2872620, 16 bytes long.
 Data: <                > A0 14 87 E2 F4 01 00 00 00 00 00 00 00 00 00 00 
{273} normal block at 0x000001F4E2872350, 16 bytes long.
 Data: <x               > 78 14 87 E2 F4 01 00 00 00 00 00 00 00 00 00 00 
{272} normal block at 0x000001F4E286AC00, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{271} normal block at 0x000001F4E2871B80, 16 bytes long.
 Data: <P               > 50 14 87 E2 F4 01 00 00 00 00 00 00 00 00 00 00 
{270} normal block at 0x000001F4E2871450, 320 bytes long.
 Data: <                > 80 1B 87 E2 F4 01 00 00 00 AC 86 E2 F4 01 00 00 
{269} normal block at 0x000001F4E28722B0, 16 bytes long.
 Data: < *              > 80 2A 87 E2 F4 01 00 00 00 00 00 00 00 00 00 00 
{268} normal block at 0x000001F4E2871B30, 16 bytes long.
 Data: <X*              > 58 2A 87 E2 F4 01 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x000001F4E286A360, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{266} normal block at 0x000001F4E2872260, 16 bytes long.
 Data: <0*              > 30 2A 87 E2 F4 01 00 00 00 00 00 00 00 00 00 00 
{265} normal block at 0x000001F4E286A720, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{264} normal block at 0x000001F4E28721C0, 16 bytes long.
 Data: <x)              > 78 29 87 E2 F4 01 00 00 00 00 00 00 00 00 00 00 
{263} normal block at 0x000001F4E2872210, 16 bytes long.
 Data: <P)              > 50 29 87 E2 F4 01 00 00 00 00 00 00 00 00 00 00 
{262} normal block at 0x000001F4E28725D0, 16 bytes long.
 Data: <()              > 28 29 87 E2 F4 01 00 00 00 00 00 00 00 00 00 00 
{261} normal block at 0x000001F4E2872300, 16 bytes long.
 Data: < )              > 00 29 87 E2 F4 01 00 00 00 00 00 00 00 00 00 00 
{260} normal block at 0x000001F4E28720D0, 16 bytes long.
 Data: < (              > D8 28 87 E2 F4 01 00 00 00 00 00 00 00 00 00 00 
{259} normal block at 0x000001F4E28723A0, 16 bytes long.
 Data: < (              > B0 28 87 E2 F4 01 00 00 00 00 00 00 00 00 00 00 
{257} normal block at 0x000001F4E2871BD0, 16 bytes long.
 Data: <                > D0 BF 86 E2 F4 01 00 00 00 00 00 00 00 00 00 00 
{256} normal block at 0x000001F4E286BFD0, 40 bytes long.
 Data: <        p       > D0 1B 87 E2 F4 01 00 00 70 AE 85 E2 F4 01 00 00 
{255} normal block at 0x000001F4E2871900, 16 bytes long.
 Data: < (              > 90 28 87 E2 F4 01 00 00 00 00 00 00 00 00 00 00 
{254} normal block at 0x000001F4E2871EF0, 16 bytes long.
 Data: <h(              > 68 28 87 E2 F4 01 00 00 00 00 00 00 00 00 00 00 
{253} normal block at 0x000001F4E286AA80, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{252} normal block at 0x000001F4E2871D10, 16 bytes long.
 Data: <@(              > 40 28 87 E2 F4 01 00 00 00 00 00 00 00 00 00 00 
{251} normal block at 0x000001F4E2872840, 992 bytes long.
 Data: <                > 10 1D 87 E2 F4 01 00 00 80 AA 86 E2 F4 01 00 00 
{87} normal block at 0x000001F4E286A600, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{86} normal block at 0x000001F4E2867390, 16 bytes long.
 Data: <                > 20 C1 86 E2 F4 01 00 00 00 00 00 00 00 00 00 00 
{85} normal block at 0x000001F4E286C120, 40 bytes long.
 Data: < s              > 90 73 86 E2 F4 01 00 00 00 A6 86 E2 F4 01 00 00 
{64} normal block at 0x000001F4E2867BB0, 16 bytes long.
 Data: <                > 80 EA DA A0 F7 7F 00 00 00 00 00 00 00 00 00 00 
{63} normal block at 0x000001F4E2867CA0, 16 bytes long.
 Data: <@               > 40 E9 DA A0 F7 7F 00 00 00 00 00 00 00 00 00 00 
{62} normal block at 0x000001F4E28674D0, 16 bytes long.
 Data: < W              > F8 57 D7 A0 F7 7F 00 00 00 00 00 00 00 00 00 00 
{61} normal block at 0x000001F4E2867AC0, 16 bytes long.
 Data: < W              > D8 57 D7 A0 F7 7F 00 00 00 00 00 00 00 00 00 00 
{60} normal block at 0x000001F4E2867E80, 16 bytes long.
 Data: <P               > 50 04 D7 A0 F7 7F 00 00 00 00 00 00 00 00 00 00 
{59} normal block at 0x000001F4E2867840, 16 bytes long.
 Data: <0               > 30 04 D7 A0 F7 7F 00 00 00 00 00 00 00 00 00 00 
{58} normal block at 0x000001F4E2867480, 16 bytes long.
 Data: <                > E0 02 D7 A0 F7 7F 00 00 00 00 00 00 00 00 00 00 
{57} normal block at 0x000001F4E2867D90, 16 bytes long.
 Data: <                > 10 04 D7 A0 F7 7F 00 00 00 00 00 00 00 00 00 00 
{56} normal block at 0x000001F4E2867430, 16 bytes long.
 Data: <p               > 70 04 D7 A0 F7 7F 00 00 00 00 00 00 00 00 00 00 
{55} normal block at 0x000001F4E2867F20, 16 bytes long.
 Data: <                > 18 C0 D5 A0 F7 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>

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