Task 38583690

Name HIF2A_A01_A39_r0_3-QUICO_ATM_GAFF2_LOMAP_HIF2A-4-5-RND6705_0
Workunit 31547761
Created 14 Dec 2025, 13:13:48 UTC
Sent 14 Dec 2025, 13:13:51 UTC
Report deadline 19 Dec 2025, 13:13:51 UTC
Received 14 Dec 2025, 18:27:58 UTC
Server state Over
Outcome Success
Client state Done
Exit status 0 (0x00000000)
Computer ID 648092
Run time 1 hours 57 min 21 sec
CPU time 1 hours 57 min 21 sec
Validate state Valid
Credit 750,000.00
Device peak FLOPS 35,706.26 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 479.25 MB
Peak swap size 12.59 GB
Peak disk usage 2.96 GB

Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
10:10:38 (11444): wrapper (7.9.26016): starting
10:10:38 (11444): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A01_A39_0.pdb
QB_A01_A39_0.xml
QB_A01_A39_equil.pdb
QB_A01_A39.inpcrd
QB_A01_A39_input.yaml
QB_A01_A39_mdlambda.pdb
QB_A01_A39_min.pdb
QB_A01_A39_npt.pdb
QB_A01_A39.pdb
QB_A01_A39.prmtop
QB_A01_A39_sys.xml
QB_A01_A39_therm.pdb
run.bat
run.sh
10:10:40 (11444): Library/usr/bin/tar.exe exited; CPU time 0.000000
10:10:40 (11444): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
tar: r*/*.dcd: Cannot stat: No such file or directory
tar: Exiting with failure status due to previous errors
12:05:40 (11444): C:/Windows/system32/cmd.exe exited; CPU time 7041.484375
12:05:40 (11444): called boinc_finish(0)
0 bytes in 0 Free Blocks.
726 bytes in 8 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 100405403 bytes.
Dumping objects ->
{3835566} normal block at 0x0000025A19B93D30, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835555} normal block at 0x0000025A19B93BE0, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835544} normal block at 0x0000025A19B93C50, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{3835533} normal block at 0x0000025A19B93F60, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835522} normal block at 0x0000025A19B93CC0, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{3835491} normal block at 0x0000025A1B956C70, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835480} normal block at 0x0000025A19B7DB00, 235 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
..\api\boinc_api.cpp(309) : {3835477} normal block at 0x0000025A19B8CC60, 8 bytes long.
 Data: <    Z   > 00 00 0C 1A 5A 02 00 00 
{3834701} normal block at 0x0000025A19B94310, 235 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
{3833953} normal block at 0x0000025A19B8DAC0, 8 bytes long.
 Data: < &#234;&#198; Z   > 10 EA C6 19 5A 02 00 00 
..\zip\boinc_zip.cpp(122) : {308} normal block at 0x0000025A19B81050, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{293} normal block at 0x0000025A19B82060, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{292} normal block at 0x0000025A19B954D0, 16 bytes long.
 Data: <h\&#185; Z           > 68 5C B9 19 5A 02 00 00 00 00 00 00 00 00 00 00 
{291} normal block at 0x0000025A19B952F0, 16 bytes long.
 Data: <@\&#185; Z           > 40 5C B9 19 5A 02 00 00 00 00 00 00 00 00 00 00 
{290} normal block at 0x0000025A19B90CC0, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{289} normal block at 0x0000025A19B948F0, 16 bytes long.
 Data: < \&#185; Z           > 18 5C B9 19 5A 02 00 00 00 00 00 00 00 00 00 00 
{288} normal block at 0x0000025A19B94C60, 16 bytes long.
 Data: <&#240;[&#185; Z           > F0 5B B9 19 5A 02 00 00 00 00 00 00 00 00 00 00 
{287} normal block at 0x0000025A19B94DF0, 16 bytes long.
 Data: <&#200;[&#185; Z           > C8 5B B9 19 5A 02 00 00 00 00 00 00 00 00 00 00 
{286} normal block at 0x0000025A19B952A0, 16 bytes long.
 Data: <&#160;[&#185; Z           > A0 5B B9 19 5A 02 00 00 00 00 00 00 00 00 00 00 
{285} normal block at 0x0000025A19B7D8D0, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{284} normal block at 0x0000025A19B94D50, 16 bytes long.
 Data: <&#248;&#238;&#183; Z           > F8 EE B7 19 5A 02 00 00 00 00 00 00 00 00 00 00 
{283} normal block at 0x0000025A19B90BA0, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{282} normal block at 0x0000025A19B94B20, 16 bytes long.
 Data: <&#208;&#238;&#183; Z           > D0 EE B7 19 5A 02 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x0000025A19B94670, 16 bytes long.
 Data: <&#168;&#238;&#183; Z           > A8 EE B7 19 5A 02 00 00 00 00 00 00 00 00 00 00 
{279} normal block at 0x0000025A19B95480, 16 bytes long.
 Data: < &#238;&#183; Z           > 80 EE B7 19 5A 02 00 00 00 00 00 00 00 00 00 00 
{278} normal block at 0x0000025A19B946C0, 16 bytes long.
 Data: <X&#238;&#183; Z           > 58 EE B7 19 5A 02 00 00 00 00 00 00 00 00 00 00 
{277} normal block at 0x0000025A19B95430, 16 bytes long.
 Data: <0&#238;&#183; Z           > 30 EE B7 19 5A 02 00 00 00 00 00 00 00 00 00 00 
{276} normal block at 0x0000025A19B94C10, 16 bytes long.
 Data: < &#238;&#183; Z           > 08 EE B7 19 5A 02 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x0000025A19B91020, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{274} normal block at 0x0000025A19B95250, 16 bytes long.
 Data: <&#224;&#237;&#183; Z           > E0 ED B7 19 5A 02 00 00 00 00 00 00 00 00 00 00 
{273} normal block at 0x0000025A19B7EDE0, 320 bytes long.
 Data: <PR&#185; Z     &#185; Z   > 50 52 B9 19 5A 02 00 00 20 10 B9 19 5A 02 00 00 
{272} normal block at 0x0000025A19B94E40, 16 bytes long.
 Data: < [&#185; Z           > 80 5B B9 19 5A 02 00 00 00 00 00 00 00 00 00 00 
{271} normal block at 0x0000025A19B94B70, 16 bytes long.
 Data: <X[&#185; Z           > 58 5B B9 19 5A 02 00 00 00 00 00 00 00 00 00 00 
{270} normal block at 0x0000025A19B90B40, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{269} normal block at 0x0000025A19B94850, 16 bytes long.
 Data: <0[&#185; Z           > 30 5B B9 19 5A 02 00 00 00 00 00 00 00 00 00 00 
{268} normal block at 0x0000025A19B90240, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{267} normal block at 0x0000025A19B949E0, 16 bytes long.
 Data: <xZ&#185; Z           > 78 5A B9 19 5A 02 00 00 00 00 00 00 00 00 00 00 
{266} normal block at 0x0000025A19B95200, 16 bytes long.
 Data: <PZ&#185; Z           > 50 5A B9 19 5A 02 00 00 00 00 00 00 00 00 00 00 
{265} normal block at 0x0000025A19B95160, 16 bytes long.
 Data: <(Z&#185; Z           > 28 5A B9 19 5A 02 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x0000025A19B951B0, 16 bytes long.
 Data: < Z&#185; Z           > 00 5A B9 19 5A 02 00 00 00 00 00 00 00 00 00 00 
{263} normal block at 0x0000025A19B95070, 16 bytes long.
 Data: <&#216;Y&#185; Z           > D8 59 B9 19 5A 02 00 00 00 00 00 00 00 00 00 00 
{262} normal block at 0x0000025A19B94D00, 16 bytes long.
 Data: <&#176;Y&#185; Z           > B0 59 B9 19 5A 02 00 00 00 00 00 00 00 00 00 00 
{260} normal block at 0x0000025A19B950C0, 16 bytes long.
 Data: <&#160;&#194;&#183; Z           > A0 C2 B7 19 5A 02 00 00 00 00 00 00 00 00 00 00 
{259} normal block at 0x0000025A19B7C2A0, 40 bytes long.
 Data: <&#192;P&#185; Z   pl&#149; Z   > C0 50 B9 19 5A 02 00 00 70 6C 95 1B 5A 02 00 00 
{258} normal block at 0x0000025A19B953E0, 16 bytes long.
 Data: < Y&#185; Z           > 90 59 B9 19 5A 02 00 00 00 00 00 00 00 00 00 00 
{257} normal block at 0x0000025A19B95110, 16 bytes long.
 Data: <hY&#185; Z           > 68 59 B9 19 5A 02 00 00 00 00 00 00 00 00 00 00 
{256} normal block at 0x0000025A19B90C00, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{255} normal block at 0x0000025A19B94A80, 16 bytes long.
 Data: <@Y&#185; Z           > 40 59 B9 19 5A 02 00 00 00 00 00 00 00 00 00 00 
{254} normal block at 0x0000025A19B95940, 992 bytes long.
 Data: < J&#185; Z     &#185; Z   > 80 4A B9 19 5A 02 00 00 00 0C B9 19 5A 02 00 00 
{90} normal block at 0x0000025A19B90D80, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{89} normal block at 0x0000025A19B8DA70, 16 bytes long.
 Data: < &#181;&#183; Z           > 20 B5 B7 19 5A 02 00 00 00 00 00 00 00 00 00 00 
{88} normal block at 0x0000025A19B7B520, 40 bytes long.
 Data: <p&#218;&#184; Z     &#185; Z   > 70 DA B8 19 5A 02 00 00 80 0D B9 19 5A 02 00 00 
{67} normal block at 0x0000025A19B8D340, 16 bytes long.
 Data: < &#234;}6&#247;           > 80 EA 7D 36 F7 7F 00 00 00 00 00 00 00 00 00 00 
{66} normal block at 0x0000025A19B8D890, 16 bytes long.
 Data: <@&#233;}6&#247;           > 40 E9 7D 36 F7 7F 00 00 00 00 00 00 00 00 00 00 
{65} normal block at 0x0000025A19B8CFD0, 16 bytes long.
 Data: <&#248;Wz6&#247;           > F8 57 7A 36 F7 7F 00 00 00 00 00 00 00 00 00 00 
{64} normal block at 0x0000025A19B8D840, 16 bytes long.
 Data: <&#216;Wz6&#247;           > D8 57 7A 36 F7 7F 00 00 00 00 00 00 00 00 00 00 
{63} normal block at 0x0000025A19B8D570, 16 bytes long.
 Data: <P z6&#247;           > 50 04 7A 36 F7 7F 00 00 00 00 00 00 00 00 00 00 
{62} normal block at 0x0000025A19B8D7A0, 16 bytes long.
 Data: <0 z6&#247;           > 30 04 7A 36 F7 7F 00 00 00 00 00 00 00 00 00 00 
{61} normal block at 0x0000025A19B8DB60, 16 bytes long.
 Data: <&#224; z6&#247;           > E0 02 7A 36 F7 7F 00 00 00 00 00 00 00 00 00 00 
{60} normal block at 0x0000025A19B8D7F0, 16 bytes long.
 Data: <  z6&#247;           > 10 04 7A 36 F7 7F 00 00 00 00 00 00 00 00 00 00 
{59} normal block at 0x0000025A19B8D750, 16 bytes long.
 Data: <p z6&#247;           > 70 04 7A 36 F7 7F 00 00 00 00 00 00 00 00 00 00 
{58} normal block at 0x0000025A19B8CF80, 16 bytes long.
 Data: < &#192;x6&#247;           > 18 C0 78 36 F7 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


©2025 Universitat Pompeu Fabra