Task 38582758

Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<message>
(unknown error) (0) - exit code 195 (0xc3)</message>
<stderr_txt>
19:38:38 (57152): wrapper (7.9.26016): starting
19:38:38 (57152): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A06_A19_0.pdb
QB_A06_A19_0.xml
QB_A06_A19_equil.pdb
QB_A06_A19.inpcrd
QB_A06_A19_input.yaml
QB_A06_A19_mdlambda.pdb
QB_A06_A19_min.pdb
QB_A06_A19_npt.pdb
QB_A06_A19.pdb
QB_A06_A19.prmtop
QB_A06_A19_sys.xml
QB_A06_A19_therm.pdb
run.bat
run.sh
19:38:40 (57152): Library/usr/bin/tar.exe exited; CPU time 0.015625
19:38:40 (57152): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'E:\BOINC\shujv\slots\17\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
ERROR: Exception:
Traceback (most recent call last):
  File "E:\BOINC\shujv\slots\17\Lib\site-packages\pip\_vendor\urllib3\response.py", line 438, in _error_catcher
    yield
  File "E:\BOINC\shujv\slots\17\Lib\site-packages\pip\_vendor\urllib3\response.py", line 561, in read
    data = self._fp_read(amt) if not fp_closed else b""
           ^^^^^^^^^^^^^^^^^^
  File "E:\BOINC\shujv\slots\17\Lib\site-packages\pip\_vendor\urllib3\response.py", line 527, in _fp_read
    return self._fp.read(amt) if amt is not None else self._fp.read()
           ^^^^^^^^^^^^^^^^^^
  File "E:\BOINC\shujv\slots\17\Lib\site-packages\pip\_vendor\cachecontrol\filewrapper.py", line 98, in read
    data: bytes = self.__fp.read(amt)
                  ^^^^^^^^^^^^^^^^^^^
  File "E:\BOINC\shujv\slots\17\Lib\http\client.py", line 473, in read
    s = self.fp.read(amt)
        ^^^^^^^^^^^^^^^^^
  File "E:\BOINC\shujv\slots\17\Lib\socket.py", line 718, in readinto
    return self._sock.recv_into(b)
           ^^^^^^^^^^^^^^^^^^^^^^^
  File "E:\BOINC\shujv\slots\17\Lib\ssl.py", line 1314, in recv_into
    return self.read(nbytes, buffer)
           ^^^^^^^^^^^^^^^^^^^^^^^^^
  File "E:\BOINC\shujv\slots\17\Lib\ssl.py", line 1166, in read
    return self._sslobj.read(len, buffer)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
TimeoutError: The read operation timed out

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "E:\BOINC\shujv\slots\17\Lib\site-packages\pip\_internal\cli\base_command.py", line 105, in _run_wrapper
    status = _inner_run()
             ^^^^^^^^^^^^
  File "E:\BOINC\shujv\slots\17\Lib\site-packages\pip\_internal\cli\base_command.py", line 96, in _inner_run
    return self.run(options, args)
           ^^^^^^^^^^^^^^^^^^^^^^^
  File "E:\BOINC\shujv\slots\17\Lib\site-packages\pip\_internal\cli\req_command.py", line 67, in wrapper
    return func(self, options, args)
           ^^^^^^^^^^^^^^^^^^^^^^^^^
  File "E:\BOINC\shujv\slots\17\Lib\site-packages\pip\_internal\commands\install.py", line 379, in run
    requirement_set = resolver.resolve(
                      ^^^^^^^^^^^^^^^^^
  File "E:\BOINC\shujv\slots\17\Lib\site-packages\pip\_internal\resolution\resolvelib\resolver.py", line 95, in resolve
    result = self._result = resolver.resolve(
                            ^^^^^^^^^^^^^^^^^
  File "E:\BOINC\shujv\slots\17\Lib\site-packages\pip\_vendor\resolvelib\resolvers.py", line 546, in resolve
    state = resolution.resolve(requirements, max_rounds=max_rounds)
            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "E:\BOINC\shujv\slots\17\Lib\site-packages\pip\_vendor\resolvelib\resolvers.py", line 397, in resolve
    self._add_to_criteria(self.state.criteria, r, parent=None)
  File "E:\BOINC\shujv\slots\17\Lib\site-packages\pip\_vendor\resolvelib\resolvers.py", line 173, in _add_to_criteria
    if not criterion.candidates:
  File "E:\BOINC\shujv\slots\17\Lib\site-packages\pip\_vendor\resolvelib\structs.py", line 156, in __bool__
    return bool(self._sequence)
           ^^^^^^^^^^^^^^^^^^^^
  File "E:\BOINC\shujv\slots\17\Lib\site-packages\pip\_internal\resolution\resolvelib\found_candidates.py", line 174, in __bool__
    return any(self)
           ^^^^^^^^^
  File "E:\BOINC\shujv\slots\17\Lib\site-packages\pip\_internal\resolution\resolvelib\found_candidates.py", line 162, in <genexpr>
    return (c for c in iterator if id(c) not in self._incompatible_ids)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "E:\BOINC\shujv\slots\17\Lib\site-packages\pip\_internal\resolution\resolvelib\found_candidates.py", line 53, in _iter_built
    candidate = func()
                ^^^^^^
  File "E:\BOINC\shujv\slots\17\Lib\site-packages\pip\_internal\resolution\resolvelib\factory.py", line 187, in _make_candidate_from_link
    base: Optional[BaseCandidate] = self._make_base_candidate_from_link(
                                    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "E:\BOINC\shujv\slots\17\Lib\site-packages\pip\_internal\resolution\resolvelib\factory.py", line 233, in _make_base_candidate_from_link
    self._link_candidate_cache[link] = LinkCandidate(
                                       ^^^^^^^^^^^^^^
  File "E:\BOINC\shujv\slots\17\Lib\site-packages\pip\_internal\resolution\resolvelib\candidates.py", line 304, in __init__
    super().__init__(
  File "E:\BOINC\shujv\slots\17\Lib\site-packages\pip\_internal\resolution\resolvelib\candidates.py", line 159, in __init__
    self.dist = self._prepare()
                ^^^^^^^^^^^^^^^
  File "E:\BOINC\shujv\slots\17\Lib\site-packages\pip\_internal\resolution\resolvelib\candidates.py", line 236, in _prepare
    dist = self._prepare_distribution()
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "E:\BOINC\shujv\slots\17\Lib\site-packages\pip\_internal\resolution\resolvelib\candidates.py", line 315, in _prepare_distribution
    return preparer.prepare_linked_requirement(self._ireq, parallel_builds=True)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "E:\BOINC\shujv\slots\17\Lib\site-packages\pip\_internal\operations\prepare.py", line 527, in prepare_linked_requirement
    return self._prepare_linked_requirement(req, parallel_builds)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "E:\BOINC\shujv\slots\17\Lib\site-packages\pip\_internal\operations\prepare.py", line 598, in _prepare_linked_requirement
    local_file = unpack_url(
                 ^^^^^^^^^^^
  File "E:\BOINC\shujv\slots\17\Lib\site-packages\pip\_internal\operations\prepare.py", line 170, in unpack_url
    file = get_http_url(
           ^^^^^^^^^^^^^
  File "E:\BOINC\shujv\slots\17\Lib\site-packages\pip\_internal\operations\prepare.py", line 111, in get_http_url
    from_path, content_type = download(link, temp_dir.path)
                              ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "E:\BOINC\shujv\slots\17\Lib\site-packages\pip\_internal\network\download.py", line 148, in __call__
    for chunk in chunks:
  File "E:\BOINC\shujv\slots\17\Lib\site-packages\pip\_internal\cli\progress_bars.py", line 55, in _rich_progress_bar
    for chunk in iterable:
  File "E:\BOINC\shujv\slots\17\Lib\site-packages\pip\_internal\network\utils.py", line 65, in response_chunks
    for chunk in response.raw.stream(
  File "E:\BOINC\shujv\slots\17\Lib\site-packages\pip\_vendor\urllib3\response.py", line 622, in stream
    data = self.read(amt=amt, decode_content=decode_content)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "E:\BOINC\shujv\slots\17\Lib\site-packages\pip\_vendor\urllib3\response.py", line 560, in read
    with self._error_catcher():
  File "E:\BOINC\shujv\slots\17\Lib\contextlib.py", line 158, in __exit__
    self.gen.throw(typ, value, traceback)
  File "E:\BOINC\shujv\slots\17\Lib\site-packages\pip\_vendor\urllib3\response.py", line 443, in _error_catcher
    raise ReadTimeoutError(self._pool, None, "Read timed out.")
pip._vendor.urllib3.exceptions.ReadTimeoutError: HTTPSConnectionPool(host='files.pythonhosted.org', port=443): Read timed out.
python.exe: can't open file 'E:\\BOINC\\shujv\\slots\\17\\Scripts\\rbfe_production.exe': [Errno 2] No such file or directory
19:47:29 (57152): C:/Windows/system32/cmd.exe exited; CPU time 3.046875
19:47:29 (57152): app exit status: 0x16
19:47:29 (57152): called boinc_finish(195)
0 bytes in 0 Free Blocks.
176 bytes in 6 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 6503939 bytes.
Dumping objects ->
{3835344} normal block at 0x000001E542B10FB0, 48 bytes long.
 Data: <PATH=E:\BOINC\sh> 50 41 54 48 3D 45 3A 5C 42 4F 49 4E 43 5C 73 68 
{3835333} normal block at 0x000001E542C58550, 32 bytes long.
 Data: <HOME=E:\BOINC\sh> 48 4F 4D 45 3D 45 3A 5C 42 4F 49 4E 43 5C 73 68 
{3835322} normal block at 0x000001E542C58670, 32 bytes long.
 Data: <TMP=E:\BOINC\shu> 54 4D 50 3D 45 3A 5C 42 4F 49 4E 43 5C 73 68 75 
{3835311} normal block at 0x000001E542C585B0, 32 bytes long.
 Data: <TEMP=E:\BOINC\sh> 54 45 4D 50 3D 45 3A 5C 42 4F 49 4E 43 5C 73 68 
{3835300} normal block at 0x000001E542C588B0, 32 bytes long.
 Data: <TMPDIR=E:\BOINC\> 54 4D 50 44 49 52 3D 45 3A 5C 42 4F 49 4E 43 5C 
{3835269} normal block at 0x000001E542B10DF0, 48 bytes long.
 Data: <PATH=E:\BOINC\sh> 50 41 54 48 3D 45 3A 5C 42 4F 49 4E 43 5C 73 68 
..\api\boinc_api.cpp(309) : {3835256} normal block at 0x000001E540C6AAC0, 8 bytes long.
 Data: <   @    > 00 00 C1 40 E5 01 00 00 
{3834041} normal block at 0x000001E540C6B010, 8 bytes long.
 Data: <`  B    > 60 D3 B1 42 E5 01 00 00 
..\zip\boinc_zip.cpp(122) : {308} normal block at 0x000001E540C74750, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{293} normal block at 0x000001E540C601C0, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{292} normal block at 0x000001E540C75BF0, 16 bytes long.
 Data: < n @            > C8 6E C7 40 E5 01 00 00 00 00 00 00 00 00 00 00 
{291} normal block at 0x000001E540C757E0, 16 bytes long.
 Data: < n @            > A0 6E C7 40 E5 01 00 00 00 00 00 00 00 00 00 00 
{290} normal block at 0x000001E540C71240, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{289} normal block at 0x000001E540C75BA0, 16 bytes long.
 Data: <xn @            > 78 6E C7 40 E5 01 00 00 00 00 00 00 00 00 00 00 
{288} normal block at 0x000001E540C76730, 16 bytes long.
 Data: <Pn @            > 50 6E C7 40 E5 01 00 00 00 00 00 00 00 00 00 00 
{287} normal block at 0x000001E540C75AB0, 16 bytes long.
 Data: <(n @            > 28 6E C7 40 E5 01 00 00 00 00 00 00 00 00 00 00 
{286} normal block at 0x000001E540C75B50, 16 bytes long.
 Data: < n @            > 00 6E C7 40 E5 01 00 00 00 00 00 00 00 00 00 00 
{285} normal block at 0x000001E540C6F950, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{284} normal block at 0x000001E540C766E0, 16 bytes long.
 Data: <   @            > D8 04 C6 40 E5 01 00 00 00 00 00 00 00 00 00 00 
{283} normal block at 0x000001E540C71600, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{282} normal block at 0x000001E540C75D30, 16 bytes long.
 Data: <   @            > B0 04 C6 40 E5 01 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x000001E540C76550, 16 bytes long.
 Data: <   @            > 88 04 C6 40 E5 01 00 00 00 00 00 00 00 00 00 00 
{279} normal block at 0x000001E540C75CE0, 16 bytes long.
 Data: <`  @            > 60 04 C6 40 E5 01 00 00 00 00 00 00 00 00 00 00 
{278} normal block at 0x000001E540C76500, 16 bytes long.
 Data: <8  @            > 38 04 C6 40 E5 01 00 00 00 00 00 00 00 00 00 00 
{277} normal block at 0x000001E540C76640, 16 bytes long.
 Data: <   @            > 10 04 C6 40 E5 01 00 00 00 00 00 00 00 00 00 00 
{276} normal block at 0x000001E540C75970, 16 bytes long.
 Data: <   @            > E8 03 C6 40 E5 01 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x000001E540C71420, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{274} normal block at 0x000001E540C76280, 16 bytes long.
 Data: <   @            > C0 03 C6 40 E5 01 00 00 00 00 00 00 00 00 00 00 
{273} normal block at 0x000001E540C603C0, 320 bytes long.
 Data: < b @       @    > 80 62 C7 40 E5 01 00 00 20 14 C7 40 E5 01 00 00 
{272} normal block at 0x000001E540C764B0, 16 bytes long.
 Data: < m @            > E0 6D C7 40 E5 01 00 00 00 00 00 00 00 00 00 00 
{271} normal block at 0x000001E540C76460, 16 bytes long.
 Data: < m @            > B8 6D C7 40 E5 01 00 00 00 00 00 00 00 00 00 00 
{270} normal block at 0x000001E540C71900, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{269} normal block at 0x000001E540C765A0, 16 bytes long.
 Data: < m @            > 90 6D C7 40 E5 01 00 00 00 00 00 00 00 00 00 00 
{268} normal block at 0x000001E540C715A0, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{267} normal block at 0x000001E540C75A60, 16 bytes long.
 Data: < l @            > D8 6C C7 40 E5 01 00 00 00 00 00 00 00 00 00 00 
{266} normal block at 0x000001E540C760A0, 16 bytes long.
 Data: < l @            > B0 6C C7 40 E5 01 00 00 00 00 00 00 00 00 00 00 
{265} normal block at 0x000001E540C759C0, 16 bytes long.
 Data: < l @            > 88 6C C7 40 E5 01 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x000001E540C76410, 16 bytes long.
 Data: <`l @            > 60 6C C7 40 E5 01 00 00 00 00 00 00 00 00 00 00 
{263} normal block at 0x000001E540C75A10, 16 bytes long.
 Data: <8l @            > 38 6C C7 40 E5 01 00 00 00 00 00 00 00 00 00 00 
{262} normal block at 0x000001E540C76230, 16 bytes long.
 Data: < l @            > 10 6C C7 40 E5 01 00 00 00 00 00 00 00 00 00 00 
{260} normal block at 0x000001E540C75920, 16 bytes long.
 Data: <p  @            > 70 FF C6 40 E5 01 00 00 00 00 00 00 00 00 00 00 
{259} normal block at 0x000001E540C6FF70, 40 bytes long.
 Data: < Y @       B    > 20 59 C7 40 E5 01 00 00 F0 0D B1 42 E5 01 00 00 
{258} normal block at 0x000001E540C75B00, 16 bytes long.
 Data: < k @            > F0 6B C7 40 E5 01 00 00 00 00 00 00 00 00 00 00 
{257} normal block at 0x000001E540C75F10, 16 bytes long.
 Data: < k @            > C8 6B C7 40 E5 01 00 00 00 00 00 00 00 00 00 00 
{256} normal block at 0x000001E540C714E0, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{255} normal block at 0x000001E540C763C0, 16 bytes long.
 Data: < k @            > A0 6B C7 40 E5 01 00 00 00 00 00 00 00 00 00 00 
{254} normal block at 0x000001E540C76BA0, 992 bytes long.
 Data: < c @       @    > C0 63 C7 40 E5 01 00 00 E0 14 C7 40 E5 01 00 00 
{90} normal block at 0x000001E540C70DC0, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{89} normal block at 0x000001E540C6ABB0, 16 bytes long.
 Data: <   @            > B0 FD C6 40 E5 01 00 00 00 00 00 00 00 00 00 00 
{88} normal block at 0x000001E540C6FDB0, 40 bytes long.
 Data: <   @       @    > B0 AB C6 40 E5 01 00 00 C0 0D C7 40 E5 01 00 00 
{65} normal block at 0x000001E540C6A480, 16 bytes long.
 Data: <  +             > 80 EA 2B 0A F6 7F 00 00 00 00 00 00 00 00 00 00 
{64} normal block at 0x000001E540C6A430, 16 bytes long.
 Data: <@ +             > 40 E9 2B 0A F6 7F 00 00 00 00 00 00 00 00 00 00 
{63} normal block at 0x000001E540C6A250, 16 bytes long.
 Data: < W(             > F8 57 28 0A F6 7F 00 00 00 00 00 00 00 00 00 00 
{62} normal block at 0x000001E540C6A750, 16 bytes long.
 Data: < W(             > D8 57 28 0A F6 7F 00 00 00 00 00 00 00 00 00 00 
{61} normal block at 0x000001E540C6A980, 16 bytes long.
 Data: <P (             > 50 04 28 0A F6 7F 00 00 00 00 00 00 00 00 00 00 
{60} normal block at 0x000001E540C6A890, 16 bytes long.
 Data: <0 (             > 30 04 28 0A F6 7F 00 00 00 00 00 00 00 00 00 00 
{59} normal block at 0x000001E540C6A660, 16 bytes long.
 Data: <  (             > E0 02 28 0A F6 7F 00 00 00 00 00 00 00 00 00 00 
{58} normal block at 0x000001E540C6A610, 16 bytes long.
 Data: <  (             > 10 04 28 0A F6 7F 00 00 00 00 00 00 00 00 00 00 
{57} normal block at 0x000001E540C6A340, 16 bytes long.
 Data: <p (             > 70 04 28 0A F6 7F 00 00 00 00 00 00 00 00 00 00 
{56} normal block at 0x000001E540C6ADE0, 16 bytes long.
 Data: <  &             > 18 C0 26 0A F6 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>

©2025 Universitat Pompeu Fabra