Task 38582750

Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
12:17:26 (20012): wrapper (7.9.26016): starting
12:17:26 (20012): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A02_A12_0.pdb
QB_A02_A12_0.xml
QB_A02_A12_equil.pdb
QB_A02_A12.inpcrd
QB_A02_A12_input.yaml
QB_A02_A12_mdlambda.pdb
QB_A02_A12_min.pdb
QB_A02_A12_npt.pdb
QB_A02_A12.pdb
QB_A02_A12.prmtop
QB_A02_A12_sys.xml
QB_A02_A12_therm.pdb
run.bat
run.sh
12:17:31 (20012): Library/usr/bin/tar.exe exited; CPU time 0.000000
12:17:31 (20012): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\12\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\12\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
Detected memory leaks!
Dumping objects ->
..\api\boinc_api.cpp(309) : {3835463} normal block at 0x000001AF1D6FD050, 8 bytes long.
 Data: <        > 00 00 B6 1D AF 01 00 00 
..\lib\diagnostics_win.cpp(417) : {3833956} normal block at 0x000001AF1D6ED520, 1080 bytes long.
 Data: <p'              > 70 27 00 00 CD CD CD CD FC 01 00 00 00 00 00 00 
..\zip\boinc_zip.cpp(122) : {310} normal block at 0x000001AF1D6F1450, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
Object dump complete.
23:20:50 (17036): wrapper (7.9.26016): starting
23:20:50 (17036): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
A subdirectory or file C:\ProgramData\BOINC\slots\12\tmp already exists.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
Detected memory leaks!
Dumping objects ->
..\api\boinc_api.cpp(309) : {1810} normal block at 0x000001C280F448C0, 8 bytes long.
 Data: <  V     > 00 00 56 81 C2 01 00 00 
..\lib\diagnostics_win.cpp(417) : {303} normal block at 0x000001C280F45CA0, 1080 bytes long.
 Data: < (              > D8 28 00 00 CD CD CD CD B8 01 00 00 00 00 00 00 
Object dump complete.
03:19:58 (24164): wrapper (7.9.26016): starting
03:19:58 (24164): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
A subdirectory or file C:\ProgramData\BOINC\slots\12\tmp already exists.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
tar: run.log: file changed as we read it
tar: r*/*.dcd: Cannot stat: No such file or directory
tar: Exiting with failure status due to previous errors
12:56:38 (24164): C:/Windows/system32/cmd.exe exited; CPU time 33425.609375
12:56:38 (24164): called boinc_finish(0)
0 bytes in 0 Free Blocks.
460 bytes in 8 Normal Blocks.
2288 bytes in 2 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 634557439 bytes.
Dumping objects ->
{1899} normal block at 0x000001BF5C724A90, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{1888} normal block at 0x000001BF5C7248D0, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{1877} normal block at 0x000001BF5C724A20, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{1866} normal block at 0x000001BF5C724BE0, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{1855} normal block at 0x000001BF5C724B70, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{1824} normal block at 0x000001BF5C720560, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{1813} normal block at 0x000001BF5C70B340, 102 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
..\api\boinc_api.cpp(309) : {1810} normal block at 0x000001BF5C725160, 8 bytes long.
 Data: <   \    > 00 00 BF 5C BF 01 00 00 
{1032} normal block at 0x000001BF5C70DD10, 102 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
{304} normal block at 0x000001BF5C725E30, 8 bytes long.
 Data: <@er\    > 40 65 72 5C BF 01 00 00 
{295} normal block at 0x000001BF5C711F10, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{294} normal block at 0x000001BF5C725660, 16 bytes long.
 Data: <Hdr\            > 48 64 72 5C BF 01 00 00 00 00 00 00 00 00 00 00 
{293} normal block at 0x000001BF5C725840, 16 bytes long.
 Data: < dr\            > 20 64 72 5C BF 01 00 00 00 00 00 00 00 00 00 00 
{292} normal block at 0x000001BF5C720DB0, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{291} normal block at 0x000001BF5C725200, 16 bytes long.
 Data: < cr\            > F8 63 72 5C BF 01 00 00 00 00 00 00 00 00 00 00 
{290} normal block at 0x000001BF5C725DE0, 16 bytes long.
 Data: < cr\            > D0 63 72 5C BF 01 00 00 00 00 00 00 00 00 00 00 
{289} normal block at 0x000001BF5C7257A0, 16 bytes long.
 Data: < cr\            > A8 63 72 5C BF 01 00 00 00 00 00 00 00 00 00 00 
{288} normal block at 0x000001BF5C725D90, 16 bytes long.
 Data: < cr\            > 80 63 72 5C BF 01 00 00 00 00 00 00 00 00 00 00 
{287} normal block at 0x000001BF5C7247F0, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{286} normal block at 0x000001BF5C7256B0, 16 bytes long.
 Data: <  p\            > D8 B2 70 5C BF 01 00 00 00 00 00 00 00 00 00 00 
{285} normal block at 0x000001BF5C720F90, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{284} normal block at 0x000001BF5C726060, 16 bytes long.
 Data: <  p\            > B0 B2 70 5C BF 01 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x000001BF5C725B60, 16 bytes long.
 Data: <  p\            > 88 B2 70 5C BF 01 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x000001BF5C725C00, 16 bytes long.
 Data: <` p\            > 60 B2 70 5C BF 01 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x000001BF5C725B10, 16 bytes long.
 Data: <8 p\            > 38 B2 70 5C BF 01 00 00 00 00 00 00 00 00 00 00 
{279} normal block at 0x000001BF5C725610, 16 bytes long.
 Data: <  p\            > 10 B2 70 5C BF 01 00 00 00 00 00 00 00 00 00 00 
{278} normal block at 0x000001BF5C725700, 16 bytes long.
 Data: <  p\            > E8 B1 70 5C BF 01 00 00 00 00 00 00 00 00 00 00 
{277} normal block at 0x000001BF5C7208D0, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{276} normal block at 0x000001BF5C7252F0, 16 bytes long.
 Data: <  p\            > C0 B1 70 5C BF 01 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x000001BF5C70B1C0, 320 bytes long.
 Data: < Rr\      r\    > F0 52 72 5C BF 01 00 00 D0 08 72 5C BF 01 00 00 
{274} normal block at 0x000001BF5C7258E0, 16 bytes long.
 Data: <`cr\            > 60 63 72 5C BF 01 00 00 00 00 00 00 00 00 00 00 
{273} normal block at 0x000001BF5C7255C0, 16 bytes long.
 Data: <8cr\            > 38 63 72 5C BF 01 00 00 00 00 00 00 00 00 00 00 
{272} normal block at 0x000001BF5C721410, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{271} normal block at 0x000001BF5C7260B0, 16 bytes long.
 Data: < cr\            > 10 63 72 5C BF 01 00 00 00 00 00 00 00 00 00 00 
{270} normal block at 0x000001BF5C720630, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{269} normal block at 0x000001BF5C725340, 16 bytes long.
 Data: <Xbr\            > 58 62 72 5C BF 01 00 00 00 00 00 00 00 00 00 00 
{268} normal block at 0x000001BF5C725D40, 16 bytes long.
 Data: <0br\            > 30 62 72 5C BF 01 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x000001BF5C725A20, 16 bytes long.
 Data: < br\            > 08 62 72 5C BF 01 00 00 00 00 00 00 00 00 00 00 
{266} normal block at 0x000001BF5C725F20, 16 bytes long.
 Data: < ar\            > E0 61 72 5C BF 01 00 00 00 00 00 00 00 00 00 00 
{265} normal block at 0x000001BF5C725CF0, 16 bytes long.
 Data: < ar\            > B8 61 72 5C BF 01 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x000001BF5C725C50, 16 bytes long.
 Data: < ar\            > 90 61 72 5C BF 01 00 00 00 00 00 00 00 00 00 00 
{262} normal block at 0x000001BF5C725930, 16 bytes long.
 Data: < Ir\            > B0 49 72 5C BF 01 00 00 00 00 00 00 00 00 00 00 
{261} normal block at 0x000001BF5C7249B0, 40 bytes long.
 Data: <0Yr\    ` r\    > 30 59 72 5C BF 01 00 00 60 05 72 5C BF 01 00 00 
{260} normal block at 0x000001BF5C725AC0, 16 bytes long.
 Data: <par\            > 70 61 72 5C BF 01 00 00 00 00 00 00 00 00 00 00 
{259} normal block at 0x000001BF5C7252A0, 16 bytes long.
 Data: <Har\            > 48 61 72 5C BF 01 00 00 00 00 00 00 00 00 00 00 
{258} normal block at 0x000001BF5C7214D0, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{257} normal block at 0x000001BF5C725BB0, 16 bytes long.
 Data: < ar\            > 20 61 72 5C BF 01 00 00 00 00 00 00 00 00 00 00 
{256} normal block at 0x000001BF5C726120, 992 bytes long.
 Data: < [r\      r\    > B0 5B 72 5C BF 01 00 00 D0 14 72 5C BF 01 00 00 
{92} normal block at 0x000001BF5C7207B0, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{91} normal block at 0x000001BF5C71D4E0, 16 bytes long.
 Data: <@Ir\            > 40 49 72 5C BF 01 00 00 00 00 00 00 00 00 00 00 
{90} normal block at 0x000001BF5C724940, 40 bytes long.
 Data: <  q\      r\    > E0 D4 71 5C BF 01 00 00 B0 07 72 5C BF 01 00 00 
{69} normal block at 0x000001BF5C71DD00, 16 bytes long.
 Data: <  I             > 80 EA 49 05 F7 7F 00 00 00 00 00 00 00 00 00 00 
{68} normal block at 0x000001BF5C71CEA0, 16 bytes long.
 Data: <@ I             > 40 E9 49 05 F7 7F 00 00 00 00 00 00 00 00 00 00 
{67} normal block at 0x000001BF5C71CE50, 16 bytes long.
 Data: < WF             > F8 57 46 05 F7 7F 00 00 00 00 00 00 00 00 00 00 
{66} normal block at 0x000001BF5C71D7B0, 16 bytes long.
 Data: < WF             > D8 57 46 05 F7 7F 00 00 00 00 00 00 00 00 00 00 
{65} normal block at 0x000001BF5C71DBC0, 16 bytes long.
 Data: <P F             > 50 04 46 05 F7 7F 00 00 00 00 00 00 00 00 00 00 
{64} normal block at 0x000001BF5C71D6C0, 16 bytes long.
 Data: <0 F             > 30 04 46 05 F7 7F 00 00 00 00 00 00 00 00 00 00 
{63} normal block at 0x000001BF5C71DB70, 16 bytes long.
 Data: <  F             > E0 02 46 05 F7 7F 00 00 00 00 00 00 00 00 00 00 
{62} normal block at 0x000001BF5C71D3A0, 16 bytes long.
 Data: <  F             > 10 04 46 05 F7 7F 00 00 00 00 00 00 00 00 00 00 
{61} normal block at 0x000001BF5C71DCB0, 16 bytes long.
 Data: <p F             > 70 04 46 05 F7 7F 00 00 00 00 00 00 00 00 00 00 
{60} normal block at 0x000001BF5C71D8F0, 16 bytes long.
 Data: <  D             > 18 C0 44 05 F7 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>

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