Task 38582238

Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<message>
The operating system cannot run (null).
 (0xc3) - exit code 195 (0xc3)</message>
<stderr_txt>
17:25:19 (4816): wrapper (7.9.26016): starting
17:25:20 (4816): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A24_A43_0.xml
QB_A24_A43.inpcrd
QB_A24_A43_input.yaml
QB_A24_A43.prmtop
run.bat
run.sh
17:25:22 (4816): Library/usr/bin/tar.exe exited; CPU time 0.015625
17:25:22 (4816): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
  WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\1\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
  WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\1\Scripts' which is not on PATH.
  Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.
Traceback (most recent call last):
  File "<frozen runpy>", line 198, in _run_module_as_main
  File "<frozen runpy>", line 88, in _run_code
  File "C:\ProgramData\BOINC\slots\1\Scripts\rbfe_production.exe\__main__.py", line 7, in <module>
  File "C:\ProgramData\BOINC\slots\1\Lib\site-packages\atom_openmm\rbfe_production.py", line 29, in rbfe_production
    rx = openmm_job_RBFE(
         ^^^^^^^^^^^^^^^^
  File "C:\ProgramData\BOINC\slots\1\Lib\site-packages\atom_openmm\openmm_async_re.py", line 408, in __init__
    super().__init__(command_file, options)
  File "C:\ProgramData\BOINC\slots\1\Lib\site-packages\atom_openmm\openmm_async_re.py", line 23, in __init__
    super().__init__(command_file, options)
  File "C:\ProgramData\BOINC\slots\1\Lib\site-packages\atom_openmm\async_re.py", line 53, in __init__
    self._checkInput()
  File "C:\ProgramData\BOINC\slots\1\Lib\site-packages\atom_openmm\openmm_async_re.py", line 265, in _checkInput
    super()._checkInput()
  File "C:\ProgramData\BOINC\slots\1\Lib\site-packages\atom_openmm\async_re.py", line 157, in _checkInput
    self._exit('JOB_TRANSPORT needs to be specified')
  File "C:\ProgramData\BOINC\slots\1\Lib\site-packages\atom_openmm\async_re.py", line 69, in _exit
    self.checkpointJob()
  File "C:\ProgramData\BOINC\slots\1\Lib\site-packages\atom_openmm\openmm_async_re.py", line 47, in checkpointJob
    for repl in range(self.nreplicas):
                      ^^^^^^^^^^^^^^
  File "C:\ProgramData\BOINC\slots\1\Lib\site-packages\atom_openmm\async_re.py", line 131, in __getattribute__
    return object.__getattribute__(self,name)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
AttributeError: 'openmm_job_RBFE' object has no attribute 'nreplicas'
17:25:42 (4816): C:/Windows/system32/cmd.exe exited; CPU time 0.500000
17:25:42 (4816): app exit status: 0x16
17:25:42 (4816): called boinc_finish(195)
0 bytes in 0 Free Blocks.
726 bytes in 8 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 264303 bytes.
Dumping objects ->
{3835280} normal block at 0x0000023D75BE0BC0, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835269} normal block at 0x0000023D75BE1410, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835258} normal block at 0x0000023D75BE0C30, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{3835247} normal block at 0x0000023D75BE0CA0, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835236} normal block at 0x0000023D75BE0DF0, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{3835205} normal block at 0x0000023D75CD36A0, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835194} normal block at 0x0000023D74273190, 235 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
..\api\boinc_api.cpp(309) : {3835190} normal block at 0x0000023D742670B0, 8 bytes long.
 Data: <   t=   > 00 00 1D 74 3D 02 00 00 
{3834573} normal block at 0x0000023D74272810, 235 bytes long.
 Data: <<project_prefere> 3C 70 72 6F 6A 65 63 74 5F 70 72 65 66 65 72 65 
{3833945} normal block at 0x0000023D74266F70, 8 bytes long.
 Data: <&#208;;&#211;u=   > D0 3B D3 75 3D 02 00 00 
..\zip\boinc_zip.cpp(122) : {304} normal block at 0x0000023D74270160, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{289} normal block at 0x0000023D742710A0, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{288} normal block at 0x0000023D742714C0, 16 bytes long.
 Data: <H:'t=           > 48 3A 27 74 3D 02 00 00 00 00 00 00 00 00 00 00 
{287} normal block at 0x0000023D742712E0, 16 bytes long.
 Data: < :'t=           > 20 3A 27 74 3D 02 00 00 00 00 00 00 00 00 00 00 
{286} normal block at 0x0000023D7426DD10, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{285} normal block at 0x0000023D74271290, 16 bytes long.
 Data: <&#248;9't=           > F8 39 27 74 3D 02 00 00 00 00 00 00 00 00 00 00 
{284} normal block at 0x0000023D742711A0, 16 bytes long.
 Data: <&#208;9't=           > D0 39 27 74 3D 02 00 00 00 00 00 00 00 00 00 00 
{283} normal block at 0x0000023D742720A0, 16 bytes long.
 Data: <&#168;9't=           > A8 39 27 74 3D 02 00 00 00 00 00 00 00 00 00 00 
{282} normal block at 0x0000023D74272000, 16 bytes long.
 Data: < 9't=           > 80 39 27 74 3D 02 00 00 00 00 00 00 00 00 00 00 
{281} normal block at 0x0000023D7426CED0, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{280} normal block at 0x0000023D74271FB0, 16 bytes long.
 Data: <8 't=           > 38 10 27 74 3D 02 00 00 00 00 00 00 00 00 00 00 
{279} normal block at 0x0000023D7426D170, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{278} normal block at 0x0000023D742718D0, 16 bytes long.
 Data: <  't=           > 10 10 27 74 3D 02 00 00 00 00 00 00 00 00 00 00 
{276} normal block at 0x0000023D74271D80, 16 bytes long.
 Data: <&#232; 't=           > E8 0F 27 74 3D 02 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x0000023D74271D30, 16 bytes long.
 Data: <&#192; 't=           > C0 0F 27 74 3D 02 00 00 00 00 00 00 00 00 00 00 
{274} normal block at 0x0000023D74271470, 16 bytes long.
 Data: <  't=           > 98 0F 27 74 3D 02 00 00 00 00 00 00 00 00 00 00 
{273} normal block at 0x0000023D742713D0, 16 bytes long.
 Data: <p 't=           > 70 0F 27 74 3D 02 00 00 00 00 00 00 00 00 00 00 
{272} normal block at 0x0000023D74271B00, 16 bytes long.
 Data: <H 't=           > 48 0F 27 74 3D 02 00 00 00 00 00 00 00 00 00 00 
{271} normal block at 0x0000023D7426DE30, 32 bytes long.
 Data: <CUDA_DEVICE=1 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 31 00 50 55 
{270} normal block at 0x0000023D74271C90, 16 bytes long.
 Data: <  't=           > 20 0F 27 74 3D 02 00 00 00 00 00 00 00 00 00 00 
{269} normal block at 0x0000023D74270F20, 320 bytes long.
 Data: <  't=   0&#222;&t=   > 90 1C 27 74 3D 02 00 00 30 DE 26 74 3D 02 00 00 
{268} normal block at 0x0000023D74272050, 16 bytes long.
 Data: <`9't=           > 60 39 27 74 3D 02 00 00 00 00 00 00 00 00 00 00 
{267} normal block at 0x0000023D74271F60, 16 bytes long.
 Data: <89't=           > 38 39 27 74 3D 02 00 00 00 00 00 00 00 00 00 00 
{266} normal block at 0x0000023D7426D9B0, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{265} normal block at 0x0000023D74271DD0, 16 bytes long.
 Data: < 9't=           > 10 39 27 74 3D 02 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x0000023D7426DAD0, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{263} normal block at 0x0000023D74271F10, 16 bytes long.
 Data: <X8't=           > 58 38 27 74 3D 02 00 00 00 00 00 00 00 00 00 00 
{262} normal block at 0x0000023D74271380, 16 bytes long.
 Data: <08't=           > 30 38 27 74 3D 02 00 00 00 00 00 00 00 00 00 00 
{261} normal block at 0x0000023D74271C40, 16 bytes long.
 Data: < 8't=           > 08 38 27 74 3D 02 00 00 00 00 00 00 00 00 00 00 
{260} normal block at 0x0000023D74271E70, 16 bytes long.
 Data: <&#224;7't=           > E0 37 27 74 3D 02 00 00 00 00 00 00 00 00 00 00 
{259} normal block at 0x0000023D74271330, 16 bytes long.
 Data: <&#184;7't=           > B8 37 27 74 3D 02 00 00 00 00 00 00 00 00 00 00 
{258} normal block at 0x0000023D74271920, 16 bytes long.
 Data: < 7't=           > 90 37 27 74 3D 02 00 00 00 00 00 00 00 00 00 00 
{256} normal block at 0x0000023D74271740, 16 bytes long.
 Data: < &#201;&t=           > 90 C9 26 74 3D 02 00 00 00 00 00 00 00 00 00 00 
{255} normal block at 0x0000023D7426C990, 40 bytes long.
 Data: <@ 't=   &#160;6&#205;u=   > 40 17 27 74 3D 02 00 00 A0 36 CD 75 3D 02 00 00 
{254} normal block at 0x0000023D74271880, 16 bytes long.
 Data: <p7't=           > 70 37 27 74 3D 02 00 00 00 00 00 00 00 00 00 00 
{253} normal block at 0x0000023D742720F0, 16 bytes long.
 Data: <H7't=           > 48 37 27 74 3D 02 00 00 00 00 00 00 00 00 00 00 
{252} normal block at 0x0000023D7426D3B0, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{251} normal block at 0x0000023D74271BA0, 16 bytes long.
 Data: < 7't=           > 20 37 27 74 3D 02 00 00 00 00 00 00 00 00 00 00 
{250} normal block at 0x0000023D74273720, 992 bytes long.
 Data: <&#160; 't=   &#176;&#211;&t=   > A0 1B 27 74 3D 02 00 00 B0 D3 26 74 3D 02 00 00 
{86} normal block at 0x0000023D7426D770, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{85} normal block at 0x0000023D74266E30, 16 bytes long.
 Data: <P&#203;&t=           > 50 CB 26 74 3D 02 00 00 00 00 00 00 00 00 00 00 
{84} normal block at 0x0000023D7426CB50, 40 bytes long.
 Data: <0n&t=   p&#215;&t=   > 30 6E 26 74 3D 02 00 00 70 D7 26 74 3D 02 00 00 
{63} normal block at 0x0000023D74266D90, 16 bytes long.
 Data: < &#234;3&#239;&#246;           > 80 EA 33 EF F6 7F 00 00 00 00 00 00 00 00 00 00 
{62} normal block at 0x0000023D74267010, 16 bytes long.
 Data: <@&#233;3&#239;&#246;           > 40 E9 33 EF F6 7F 00 00 00 00 00 00 00 00 00 00 
{61} normal block at 0x0000023D74267330, 16 bytes long.
 Data: <&#248;W0&#239;&#246;           > F8 57 30 EF F6 7F 00 00 00 00 00 00 00 00 00 00 
{60} normal block at 0x0000023D74266660, 16 bytes long.
 Data: <&#216;W0&#239;&#246;           > D8 57 30 EF F6 7F 00 00 00 00 00 00 00 00 00 00 
{59} normal block at 0x0000023D74266D40, 16 bytes long.
 Data: <P 0&#239;&#246;           > 50 04 30 EF F6 7F 00 00 00 00 00 00 00 00 00 00 
{58} normal block at 0x0000023D74266930, 16 bytes long.
 Data: <0 0&#239;&#246;           > 30 04 30 EF F6 7F 00 00 00 00 00 00 00 00 00 00 
{57} normal block at 0x0000023D74266FC0, 16 bytes long.
 Data: <&#224; 0&#239;&#246;           > E0 02 30 EF F6 7F 00 00 00 00 00 00 00 00 00 00 
{56} normal block at 0x0000023D74267240, 16 bytes long.
 Data: <  0&#239;&#246;           > 10 04 30 EF F6 7F 00 00 00 00 00 00 00 00 00 00 
{55} normal block at 0x0000023D74266CF0, 16 bytes long.
 Data: <p 0&#239;&#246;           > 70 04 30 EF F6 7F 00 00 00 00 00 00 00 00 00 00 
{54} normal block at 0x0000023D74266CA0, 16 bytes long.
 Data: < &#192;.&#239;&#246;           > 18 C0 2E EF F6 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>

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