Task 38582216
| Name | HIF2A_A07_A04_r0_3-QUICO_ATM_GAFF2_LOMAP_HIF2A-3-5-RND1973_0 |
| Workunit | 31546560 |
| Created | 12 Dec 2025, 23:32:23 UTC |
| Sent | 12 Dec 2025, 23:32:24 UTC |
| Report deadline | 17 Dec 2025, 23:32:24 UTC |
| Received | 13 Dec 2025, 12:23:20 UTC |
| Server state | Over |
| Outcome | Success |
| Client state | Done |
| Exit status | 0 (0x00000000) |
| Computer ID | 630979 |
| Run time | 12 hours 41 min 24 sec |
| CPU time | 11 hours 56 min 41 sec |
| Validate state | Valid |
| Credit | 750,000.00 |
| Device peak FLOPS | 6,743.93 GFLOPS |
| Application version | ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121) windows_x86_64 |
| Peak working set size | 424.58 MB |
| Peak swap size | 3.43 GB |
| Peak disk usage | 2.97 GB |
Stderr output
<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
16:28:28 (1404): wrapper (7.9.26016): starting
16:28:28 (1404): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A07_A04_0.pdb
QB_A07_A04_0.xml
QB_A07_A04_equil.pdb
QB_A07_A04.inpcrd
QB_A07_A04_input.yaml
QB_A07_A04_mdlambda.pdb
QB_A07_A04_min.pdb
QB_A07_A04_npt.pdb
QB_A07_A04.pdb
QB_A07_A04.prmtop
QB_A07_A04_sys.xml
QB_A07_A04_therm.pdb
run.bat
run.sh
16:28:42 (1404): Library/usr/bin/tar.exe exited; CPU time 0.031250
16:28:42 (1404): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
WARNING: The script pyaml.exe is installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
Running command pip subprocess to install build dependencies
Using pip 24.3.1 from C:\ProgramData\BOINC\slots\0\Lib\site-packages\pip (python 3.11)
Collecting setuptools
Obtaining dependency information for setuptools from https://files.pythonhosted.org/packages/a3/dc/17031897dae0efacfea57dfd3a82fdd2a2aeb58e0ff71b77b87e44edc772/setuptools-80.9.0-py3-none-any.whl.metadata
Using cached setuptools-80.9.0-py3-none-any.whl.metadata (6.6 kB)
Collecting setuptools-scm>=8
Obtaining dependency information for setuptools-scm>=8 from https://files.pythonhosted.org/packages/3d/ea/ac2bf868899d0d2e82ef72d350d97a846110c709bacf2d968431576ca915/setuptools_scm-9.2.2-py3-none-any.whl.metadata
Downloading setuptools_scm-9.2.2-py3-none-any.whl.metadata (7.7 kB)
Collecting packaging>=20 (from setuptools-scm>=8)
Obtaining dependency information for packaging>=20 from https://files.pythonhosted.org/packages/20/12/38679034af332785aac8774540895e234f4d07f7545804097de4b666afd8/packaging-25.0-py3-none-any.whl.metadata
Using cached packaging-25.0-py3-none-any.whl.metadata (3.3 kB)
Using cached setuptools-80.9.0-py3-none-any.whl (1.2 MB)
Downloading setuptools_scm-9.2.2-py3-none-any.whl (62 kB)
Using cached packaging-25.0-py3-none-any.whl (66 kB)
Installing collected packages: setuptools, packaging, setuptools-scm
Creating C:\ProgramData\BOINC\slots\0\pip-build-env-21osqjf_\overlay\Scripts
Successfully installed packaging-25.0 setuptools-80.9.0 setuptools-scm-9.2.2
Running command Getting requirements to build wheel
C:\ProgramData\BOINC\slots\0\pip-build-env-21osqjf_\overlay\Lib\site-packages\setuptools_scm\_integration\version_inference.py:51: UserWarning: version of None already set
warnings.warn(self.message)
running egg_info
writing atom_openmm.egg-info\PKG-INFO
writing dependency_links to atom_openmm.egg-info\dependency_links.txt
writing entry points to atom_openmm.egg-info\entry_points.txt
writing requirements to atom_openmm.egg-info\requires.txt
writing top-level names to atom_openmm.egg-info\top_level.txt
listing git files failed - pretending there aren't any
reading manifest file 'atom_openmm.egg-info\SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE'
writing manifest file 'atom_openmm.egg-info\SOURCES.txt'
Running command Preparing metadata (pyproject.toml)
C:\ProgramData\BOINC\slots\0\pip-build-env-21osqjf_\overlay\Lib\site-packages\setuptools_scm\_integration\version_inference.py:51: UserWarning: version of None already set
warnings.warn(self.message)
running dist_info
creating C:\ProgramData\BOINC\slots\0\pip-modern-metadata-4v0xq9_d\atom_openmm.egg-info
writing C:\ProgramData\BOINC\slots\0\pip-modern-metadata-4v0xq9_d\atom_openmm.egg-info\PKG-INFO
writing dependency_links to C:\ProgramData\BOINC\slots\0\pip-modern-metadata-4v0xq9_d\atom_openmm.egg-info\dependency_links.txt
writing entry points to C:\ProgramData\BOINC\slots\0\pip-modern-metadata-4v0xq9_d\atom_openmm.egg-info\entry_points.txt
writing requirements to C:\ProgramData\BOINC\slots\0\pip-modern-metadata-4v0xq9_d\atom_openmm.egg-info\requires.txt
writing top-level names to C:\ProgramData\BOINC\slots\0\pip-modern-metadata-4v0xq9_d\atom_openmm.egg-info\top_level.txt
writing manifest file 'C:\ProgramData\BOINC\slots\0\pip-modern-metadata-4v0xq9_d\atom_openmm.egg-info\SOURCES.txt'
listing git files failed - pretending there aren't any
reading manifest file 'C:\ProgramData\BOINC\slots\0\pip-modern-metadata-4v0xq9_d\atom_openmm.egg-info\SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE'
writing manifest file 'C:\ProgramData\BOINC\slots\0\pip-modern-metadata-4v0xq9_d\atom_openmm.egg-info\SOURCES.txt'
creating 'C:\ProgramData\BOINC\slots\0\pip-modern-metadata-4v0xq9_d\atom_openmm-8.4.0.dist-info'
Running command Building wheel for atom-openmm (pyproject.toml)
C:\ProgramData\BOINC\slots\0\pip-build-env-21osqjf_\overlay\Lib\site-packages\setuptools_scm\_integration\version_inference.py:51: UserWarning: version of None already set
warnings.warn(self.message)
running bdist_wheel
running build
running build_py
creating build\lib\atom_openmm
copying atom_openmm\abfe_explicit.py -> build\lib\atom_openmm
copying atom_openmm\abfe_production.py -> build\lib\atom_openmm
copying atom_openmm\abfe_structprep.py -> build\lib\atom_openmm
copying atom_openmm\async_re.py -> build\lib\atom_openmm
copying atom_openmm\gibbs_sampling.py -> build\lib\atom_openmm
copying atom_openmm\local_openmm_transport.py -> build\lib\atom_openmm
copying atom_openmm\make_atm_system_from_amber.py -> build\lib\atom_openmm
copying atom_openmm\make_atm_system_from_pdb.py -> build\lib\atom_openmm
copying atom_openmm\make_atm_system_from_rcpt_lig.py -> build\lib\atom_openmm
copying atom_openmm\ommreplica.py -> build\lib\atom_openmm
copying atom_openmm\ommsystem.py -> build\lib\atom_openmm
copying atom_openmm\ommworker.py -> build\lib\atom_openmm
copying atom_openmm\openmm_async_re.py -> build\lib\atom_openmm
copying atom_openmm\rbfe_explicit.py -> build\lib\atom_openmm
copying atom_openmm\rbfe_production.py -> build\lib\atom_openmm
copying atom_openmm\rbfe_structprep.py -> build\lib\atom_openmm
copying atom_openmm\temperatureRE_explicit.py -> build\lib\atom_openmm
copying atom_openmm\transport.py -> build\lib\atom_openmm
copying atom_openmm\uwham.py -> build\lib\atom_openmm
copying atom_openmm\__init__.py -> build\lib\atom_openmm
creating build\lib\atom_openmm\utils
copying atom_openmm\utils\AtomUtils.py -> build\lib\atom_openmm\utils
copying atom_openmm\utils\config.py -> build\lib\atom_openmm\utils
copying atom_openmm\utils\singal_guard.py -> build\lib\atom_openmm\utils
copying atom_openmm\utils\timer.py -> build\lib\atom_openmm\utils
copying atom_openmm\utils\__init__.py -> build\lib\atom_openmm\utils
running egg_info
writing atom_openmm.egg-info\PKG-INFO
writing dependency_links to atom_openmm.egg-info\dependency_links.txt
writing entry points to atom_openmm.egg-info\entry_points.txt
writing requirements to atom_openmm.egg-info\requires.txt
writing top-level names to atom_openmm.egg-info\top_level.txt
listing git files failed - pretending there aren't any
reading manifest file 'atom_openmm.egg-info\SOURCES.txt'
reading manifest template 'MANIFEST.in'
adding license file 'LICENSE'
writing manifest file 'atom_openmm.egg-info\SOURCES.txt'
copying atom_openmm\utils\logging.conf -> build\lib\atom_openmm\utils
installing to build\bdist.win-amd64\wheel
running install
running install_lib
creating build\bdist.win-amd64\wheel
creating build\bdist.win-amd64\wheel\atom_openmm
copying build\lib\atom_openmm\abfe_explicit.py -> build\bdist.win-amd64\wheel\.\atom_openmm
copying build\lib\atom_openmm\abfe_production.py -> build\bdist.win-amd64\wheel\.\atom_openmm
copying build\lib\atom_openmm\abfe_structprep.py -> build\bdist.win-amd64\wheel\.\atom_openmm
copying build\lib\atom_openmm\async_re.py -> build\bdist.win-amd64\wheel\.\atom_openmm
copying build\lib\atom_openmm\gibbs_sampling.py -> build\bdist.win-amd64\wheel\.\atom_openmm
copying build\lib\atom_openmm\local_openmm_transport.py -> build\bdist.win-amd64\wheel\.\atom_openmm
copying build\lib\atom_openmm\make_atm_system_from_amber.py -> build\bdist.win-amd64\wheel\.\atom_openmm
copying build\lib\atom_openmm\make_atm_system_from_pdb.py -> build\bdist.win-amd64\wheel\.\atom_openmm
copying build\lib\atom_openmm\make_atm_system_from_rcpt_lig.py -> build\bdist.win-amd64\wheel\.\atom_openmm
copying build\lib\atom_openmm\ommreplica.py -> build\bdist.win-amd64\wheel\.\atom_openmm
copying build\lib\atom_openmm\ommsystem.py -> build\bdist.win-amd64\wheel\.\atom_openmm
copying build\lib\atom_openmm\ommworker.py -> build\bdist.win-amd64\wheel\.\atom_openmm
copying build\lib\atom_openmm\openmm_async_re.py -> build\bdist.win-amd64\wheel\.\atom_openmm
copying build\lib\atom_openmm\rbfe_explicit.py -> build\bdist.win-amd64\wheel\.\atom_openmm
copying build\lib\atom_openmm\rbfe_production.py -> build\bdist.win-amd64\wheel\.\atom_openmm
copying build\lib\atom_openmm\rbfe_structprep.py -> build\bdist.win-amd64\wheel\.\atom_openmm
copying build\lib\atom_openmm\temperatureRE_explicit.py -> build\bdist.win-amd64\wheel\.\atom_openmm
copying build\lib\atom_openmm\transport.py -> build\bdist.win-amd64\wheel\.\atom_openmm
creating build\bdist.win-amd64\wheel\atom_openmm\utils
copying build\lib\atom_openmm\utils\AtomUtils.py -> build\bdist.win-amd64\wheel\.\atom_openmm\utils
copying build\lib\atom_openmm\utils\config.py -> build\bdist.win-amd64\wheel\.\atom_openmm\utils
copying build\lib\atom_openmm\utils\logging.conf -> build\bdist.win-amd64\wheel\.\atom_openmm\utils
copying build\lib\atom_openmm\utils\singal_guard.py -> build\bdist.win-amd64\wheel\.\atom_openmm\utils
copying build\lib\atom_openmm\utils\timer.py -> build\bdist.win-amd64\wheel\.\atom_openmm\utils
copying build\lib\atom_openmm\utils\__init__.py -> build\bdist.win-amd64\wheel\.\atom_openmm\utils
copying build\lib\atom_openmm\uwham.py -> build\bdist.win-amd64\wheel\.\atom_openmm
copying build\lib\atom_openmm\__init__.py -> build\bdist.win-amd64\wheel\.\atom_openmm
running install_egg_info
Copying atom_openmm.egg-info to build\bdist.win-amd64\wheel\.\atom_openmm-8.4.0-py3.11.egg-info
running install_scripts
creating build\bdist.win-amd64\wheel\atom_openmm-8.4.0.dist-info\WHEEL
creating 'C:\ProgramData\BOINC\slots\0\pip-wheel-dzk8n1n4\.tmp-323ki2i5\atom_openmm-8.4.0-py3-none-any.whl' and adding 'build\bdist.win-amd64\wheel' to it
adding 'atom_openmm/__init__.py'
adding 'atom_openmm/abfe_explicit.py'
adding 'atom_openmm/abfe_production.py'
adding 'atom_openmm/abfe_structprep.py'
adding 'atom_openmm/async_re.py'
adding 'atom_openmm/gibbs_sampling.py'
adding 'atom_openmm/local_openmm_transport.py'
adding 'atom_openmm/make_atm_system_from_amber.py'
adding 'atom_openmm/make_atm_system_from_pdb.py'
adding 'atom_openmm/make_atm_system_from_rcpt_lig.py'
adding 'atom_openmm/ommreplica.py'
adding 'atom_openmm/ommsystem.py'
adding 'atom_openmm/ommworker.py'
adding 'atom_openmm/openmm_async_re.py'
adding 'atom_openmm/rbfe_explicit.py'
adding 'atom_openmm/rbfe_production.py'
adding 'atom_openmm/rbfe_structprep.py'
adding 'atom_openmm/temperatureRE_explicit.py'
adding 'atom_openmm/transport.py'
adding 'atom_openmm/uwham.py'
adding 'atom_openmm/utils/AtomUtils.py'
adding 'atom_openmm/utils/__init__.py'
adding 'atom_openmm/utils/config.py'
adding 'atom_openmm/utils/logging.conf'
adding 'atom_openmm/utils/singal_guard.py'
adding 'atom_openmm/utils/timer.py'
adding 'atom_openmm-8.4.0.dist-info/licenses/LICENSE'
adding 'atom_openmm-8.4.0.dist-info/METADATA'
adding 'atom_openmm-8.4.0.dist-info/WHEEL'
adding 'atom_openmm-8.4.0.dist-info/entry_points.txt'
adding 'atom_openmm-8.4.0.dist-info/top_level.txt'
adding 'atom_openmm-8.4.0.dist-info/RECORD'
removing build\bdist.win-amd64\wheel
WARNING: The scripts abfe_production.exe, abfe_structprep.exe, make_atm_system_from_amber.exe, make_atm_system_from_pdb.exe, make_atm_system_from_rcpt_lig.exe, rbfe_production.exe and rbfe_structprep.exe are installed in 'C:\ProgramData\BOINC\slots\0\Scripts' which is not on PATH.
Consider adding this directory to PATH or, if you prefer to suppress this warning, use --no-warn-script-location.
tar: r0/checkpoint.xml: time stamp 2025-12-12 16:30:38 is 49.1964896 s in the future
tar: r1/checkpoint.xml: time stamp 2025-12-12 16:30:39 is 49.5487258 s in the future
tar: r10/checkpoint.xml: time stamp 2025-12-12 16:30:45 is 54.9088984 s in the future
tar: r11/checkpoint.xml: time stamp 2025-12-12 16:30:45 is 54.2834892 s in the future
tar: r12/checkpoint.xml: time stamp 2025-12-12 16:30:46 is 54.6565019 s in the future
tar: r13/checkpoint.xml: time stamp 2025-12-12 16:30:46 is 53.9709733 s in the future
tar: r14/checkpoint.xml: time stamp 2025-12-12 16:30:47 is 54.3672906 s in the future
tar: r15/checkpoint.xml: time stamp 2025-12-12 16:30:48 is 54.7498442 s in the future
tar: r16/checkpoint.xml: time stamp 2025-12-12 16:30:48 is 54.1683457 s in the future
tar: r17/checkpoint.xml: time stamp 2025-12-12 16:30:49 is 54.5874898 s in the future
tar: r18/checkpoint.xml: time stamp 2025-12-12 16:30:49 is 53.8670791 s in the future
tar: r19/checkpoint.xml: time stamp 2025-12-12 16:30:50 is 54.3091884 s in the future
tar: r2/checkpoint.xml: time stamp 2025-12-12 16:30:40 is 43.6484046 s in the future
tar: r20/checkpoint.xml: time stamp 2025-12-12 16:30:51 is 53.9623087 s in the future
tar: r21/checkpoint.xml: time stamp 2025-12-12 16:30:51 is 53.3730207 s in the future
tar: r3/checkpoint.xml: time stamp 2025-12-12 16:30:40 is 41.7104244 s in the future
tar: r4/checkpoint.xml: time stamp 2025-12-12 16:30:41 is 42.1230065 s in the future
tar: r5/checkpoint.xml: time stamp 2025-12-12 16:30:41 is 41.4103405 s in the future
tar: r6/checkpoint.xml: time stamp 2025-12-12 16:30:42 is 41.8311323 s in the future
tar: r7/checkpoint.xml: time stamp 2025-12-12 16:30:43 is 42.2292126 s in the future
tar: r8/checkpoint.xml: time stamp 2025-12-12 16:30:43 is 41.676954 s in the future
tar: r9/checkpoint.xml: time stamp 2025-12-12 16:30:44 is 42.1144461 s in the future
Warning: importing 'simtk.openmm' is deprecated. Import 'openmm' instead.
tar: run.log: file changed as we read it
tar: r*/*.dcd: Cannot stat: No such file or directory
tar: Exiting with failure status due to previous errors
05:15:09 (1404): C:/Windows/system32/cmd.exe exited; CPU time 43001.390625
05:15:09 (1404): called boinc_finish(0)
0 bytes in 0 Free Blocks.
256 bytes in 6 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 394221859 bytes.
Dumping objects ->
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{262} normal block at 0x0000028DF14D74E0, 16 bytes long.
Data: < |Mñ > 00 7C 4D F1 8D 02 00 00 00 00 00 00 00 00 00 00
{261} normal block at 0x0000028DF14D7440, 16 bytes long.
Data: <Ø{Mñ > D8 7B 4D F1 8D 02 00 00 00 00 00 00 00 00 00 00
{260} normal block at 0x0000028DF14D6D60, 16 bytes long.
Data: <°{Mñ > B0 7B 4D F1 8D 02 00 00 00 00 00 00 00 00 00 00
{258} normal block at 0x0000028DF14D78F0, 16 bytes long.
Data: <À Mñ > C0 0C 4D F1 8D 02 00 00 00 00 00 00 00 00 00 00
{257} normal block at 0x0000028DF14D0CC0, 40 bytes long.
Data: <ðxMñ } ó > F0 78 4D F1 8D 02 00 00 10 7D 08 F3 8D 02 00 00
{256} normal block at 0x0000028DF14D6C70, 16 bytes long.
Data: < {Mñ > 90 7B 4D F1 8D 02 00 00 00 00 00 00 00 00 00 00
{255} normal block at 0x0000028DF14D7710, 16 bytes long.
Data: <h{Mñ > 68 7B 4D F1 8D 02 00 00 00 00 00 00 00 00 00 00
{254} normal block at 0x0000028DF14D2BD0, 32 bytes long.
Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F
{253} normal block at 0x0000028DF14D7350, 16 bytes long.
Data: <@{Mñ > 40 7B 4D F1 8D 02 00 00 00 00 00 00 00 00 00 00
{252} normal block at 0x0000028DF14D7B40, 992 bytes long.
Data: <PsMñ Ð+Mñ > 50 73 4D F1 8D 02 00 00 D0 2B 4D F1 8D 02 00 00
{88} normal block at 0x0000028DF14D2AB0, 32 bytes long.
Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F
{87} normal block at 0x0000028DF14CBFB0, 16 bytes long.
Data: <@ Mñ > 40 10 4D F1 8D 02 00 00 00 00 00 00 00 00 00 00
{86} normal block at 0x0000028DF14D1040, 40 bytes long.
Data: <°¿Lñ °*Mñ > B0 BF 4C F1 8D 02 00 00 B0 2A 4D F1 8D 02 00 00
{65} normal block at 0x0000028DF14CCAF0, 16 bytes long.
Data: < êf ÷ > 80 EA 66 10 F7 7F 00 00 00 00 00 00 00 00 00 00
{64} normal block at 0x0000028DF14CC910, 16 bytes long.
Data: <@éf ÷ > 40 E9 66 10 F7 7F 00 00 00 00 00 00 00 00 00 00
{63} normal block at 0x0000028DF14CC6E0, 16 bytes long.
Data: <øWc ÷ > F8 57 63 10 F7 7F 00 00 00 00 00 00 00 00 00 00
{62} normal block at 0x0000028DF14CC640, 16 bytes long.
Data: <ØWc ÷ > D8 57 63 10 F7 7F 00 00 00 00 00 00 00 00 00 00
{61} normal block at 0x0000028DF14CC5A0, 16 bytes long.
Data: <P c ÷ > 50 04 63 10 F7 7F 00 00 00 00 00 00 00 00 00 00
{60} normal block at 0x0000028DF14CC320, 16 bytes long.
Data: <0 c ÷ > 30 04 63 10 F7 7F 00 00 00 00 00 00 00 00 00 00
{59} normal block at 0x0000028DF14CC960, 16 bytes long.
Data: <à c ÷ > E0 02 63 10 F7 7F 00 00 00 00 00 00 00 00 00 00
{58} normal block at 0x0000028DF14CC2D0, 16 bytes long.
Data: < c ÷ > 10 04 63 10 F7 7F 00 00 00 00 00 00 00 00 00 00
{57} normal block at 0x0000028DF14CBDD0, 16 bytes long.
Data: <p c ÷ > 70 04 63 10 F7 7F 00 00 00 00 00 00 00 00 00 00
{56} normal block at 0x0000028DF14CBEC0, 16 bytes long.
Data: < Àa ÷ > 18 C0 61 10 F7 7F 00 00 00 00 00 00 00 00 00 00
Object dump complete.
</stderr_txt>
]]>
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