Task 38580398

Name	JNK1_A27_A38_r3_1-QUICO_ATM_GAFF2_LOMAP_JNK1_2-0-5-RND3859_0
Workunit	31545229
Created	11 Dec 2025, 14:32:10 UTC
Sent	11 Dec 2025, 14:32:18 UTC
Report deadline	16 Dec 2025, 14:32:18 UTC
Received	12 Dec 2025, 9:32:02 UTC
Server state	Over
Outcome	Computation error
Client state	Aborted by user
Exit status	203 (0x000000CB) EXIT_ABORTED_VIA_GUI
Computer ID	637595
Run time	18 hours 57 min 42 sec
CPU time	6 hours 34 min 12 sec
Validate state	Invalid
Credit	0.00
Device peak FLOPS	91,614.49 GFLOPS
Application version	ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121) x86_64-pc-linux-gnu
Peak working set size	607.65 MB
Peak swap size	32.15 GB
Peak disk usage	3.17 GB

Stderr output

<core_client_version>7.24.1</core_client_version>
<![CDATA[
<message>
aborted by user</message>
<stderr_txt>
2025-12-11 15:33:09 (391110): wrapper (8.1.26018): starting
2025-12-11 15:33:32 (391110): wrapper: running bin/python (bin/conda-unpack)
2025-12-11 15:33:32 (391110): wrapper: created child process 391112
2025-12-11 15:33:33 (391110): bin/python exited; CPU time 0.122209
2025-12-11 15:33:33 (391110): wrapper: running bin/tar (xjvf input.tar.bz2)
2025-12-11 15:33:33 (391110): wrapper: created child process 391113
2025-12-11 15:33:35 (391110): bin/tar exited; CPU time 1.421336
2025-12-11 15:33:35 (391110): wrapper: running bin/bash (run.sh)
2025-12-11 15:33:35 (391110): wrapper: created child process 391115
+ echo 'Setup environment'
+ source bin/activate
++ _conda_pack_activate
++ local _CONDA_SHELL_FLAVOR
++ '[' -n x ']'
++ _CONDA_SHELL_FLAVOR=bash
++ local script_dir
++ case "$_CONDA_SHELL_FLAVOR" in
+++ dirname bin/activate
++ script_dir=bin
+++ cd bin
+++ pwd
++ local full_path_script_dir=/storage/boinc-client/slots/13/bin
+++ dirname /storage/boinc-client/slots/13/bin
++ local full_path_env=/storage/boinc-client/slots/13
+++ basename /storage/boinc-client/slots/13
++ local env_name=13
++ '[' -n '' ']'
++ export CONDA_PREFIX=/storage/boinc-client/slots/13
++ CONDA_PREFIX=/storage/boinc-client/slots/13
++ export _CONDA_PACK_OLD_PS1=
++ _CONDA_PACK_OLD_PS1=
++ PATH=/storage/boinc-client/slots/13/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin:.
++ PS1='(13) '
++ case "$_CONDA_SHELL_FLAVOR" in
++ hash -r
++ local _script_dir=/storage/boinc-client/slots/13/etc/conda/activate.d
++ '[' -d /storage/boinc-client/slots/13/etc/conda/activate.d ']'
+ export PATH=/storage/boinc-client/slots/13:/storage/boinc-client/slots/13/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin:.
+ PATH=/storage/boinc-client/slots/13:/storage/boinc-client/slots/13/bin:/usr/local/bin:/usr/local/sbin:/usr/bin:/usr/sbin:/bin:/sbin:.
+ echo 'Create a temporary directory'
+ export TMP=/storage/boinc-client/slots/13/tmp
+ TMP=/storage/boinc-client/slots/13/tmp
+ mkdir -p /storage/boinc-client/slots/13/tmp
+ echo 'Configure AToM'
+ echo localhost,0:0,1,CUDA,,/storage/boinc-client/slots/13/tmp
+ FILE=starting_sample
+ '[' -f starting_sample ']'
+ echo 'starting_sample does not exist.'
+ echo 'Install ATM and deps'
+ python -m pip list
+ python -m pip install pyaml -v
+ python -m pip install --no-dependencies atom-openmm -v
+ python -m pip list
+ echo 'Extract restart'
+ tar xjvf restart.tar.bz2
+ echo 'Run AToM'
+ CONFIG_FILE=QB_A27_A38_input.yaml
+ python bin/rbfe_production QB_A27_A38_input.yaml
Warning: importing 'simtk.openmm' is deprecated.  Import 'openmm' instead.

</stderr_txt>
]]>