Task 38579913
| Name | JNK1_A25_A31_r0_1-QUICO_ATM_GAFF2_LOMAP_JNK1-0-5-RND0546_4 |
| Workunit | 31545076 |
| Created | 11 Dec 2025, 13:27:52 UTC |
| Sent | 11 Dec 2025, 13:27:53 UTC |
| Report deadline | 16 Dec 2025, 13:27:53 UTC |
| Received | 16 Dec 2025, 12:42:21 UTC |
| Server state | Over |
| Outcome | Computation error |
| Client state | Compute error |
| Exit status | 195 (0x000000C3) EXIT_CHILD_FAILED |
| Computer ID | 637154 |
| Run time | 5 min 14 sec |
| CPU time | 16 sec |
| Validate state | Invalid |
| Credit | 0.00 |
| Device peak FLOPS | 22,278.46 GFLOPS |
| Application version | ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121) windows_x86_64 |
| Peak working set size | 54.07 MB |
| Peak swap size | 39.14 MB |
| Peak disk usage | 3.72 GB |
Stderr output
<core_client_version>8.2.8</core_client_version>
<![CDATA[
<message>
The operating system cannot run (null).
(0xc3) - exit code 195 (0xc3)</message>
<stderr_txt>
13:36:45 (3708): wrapper (7.9.26016): starting
13:36:45 (3708): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A25_A31_0.pdb
QB_A25_A31_0.xml
QB_A25_A31_equil.pdb
QB_A25_A31.inpcrd
QB_A25_A31_input.yaml
QB_A25_A31_mdlambda.pdb
QB_A25_A31_min.pdb
QB_A25_A31_npt.pdb
QB_A25_A31_out_merged_nowater.pdb
QB_A25_A31.pdb
QB_A25_A31.prmtop
QB_A25_A31_sys.xml
QB_A25_A31_therm.pdb
run.bat
run.sh
13:37:20 (3708): Library/usr/bin/tar.exe exited; CPU time 2.250000
13:37:20 (3708): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'NewConnectionError('<pip._vendor.urllib3.connection.HTTPSConnection object at 0x0000026BEF592A50>: Failed to establish a new connection: [Errno 11001] getaddrinfo failed')': /simple/pyaml/
WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'NewConnectionError('<pip._vendor.urllib3.connection.HTTPSConnection object at 0x0000026BEF59C5D0>: Failed to establish a new connection: [Errno 11001] getaddrinfo failed')': /simple/pyaml/
WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'NewConnectionError('<pip._vendor.urllib3.connection.HTTPSConnection object at 0x0000026BEF59D010>: Failed to establish a new connection: [Errno 11001] getaddrinfo failed')': /simple/pyaml/
WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'NewConnectionError('<pip._vendor.urllib3.connection.HTTPSConnection object at 0x0000026BEF59D890>: Failed to establish a new connection: [Errno 11001] getaddrinfo failed')': /simple/pyaml/
WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'NewConnectionError('<pip._vendor.urllib3.connection.HTTPSConnection object at 0x0000026BEF59E210>: Failed to establish a new connection: [Errno 11001] getaddrinfo failed')': /simple/pyaml/
ERROR: Could not find a version that satisfies the requirement pyaml (from versions: none)
ERROR: No matching distribution found for pyaml
Running command git version
git version 2.47.0.windows.1
Running command git clone --filter=blob:none https://github.com/Acellera/atm.git 'C:\ProgramData\BOINC\slots\24\pip-req-build-9adz7cfd'
Cloning into 'C:\ProgramData\BOINC\slots\24\pip-req-build-9adz7cfd'...
fatal: unable to access 'https://github.com/Acellera/atm.git/': Could not resolve host: github.com
error: subprocess-exited-with-error
git clone --filter=blob:none https://github.com/Acellera/atm.git 'C:\ProgramData\BOINC\slots\24\pip-req-build-9adz7cfd' did not run successfully.
exit code: 128
See above for output.
note: This error originates from a subprocess, and is likely not a problem with pip.
full command: git clone --filter=blob:none https://github.com/Acellera/atm.git 'C:\ProgramData\BOINC\slots\24\pip-req-build-9adz7cfd'
cwd: [inherit]
error: subprocess-exited-with-error
git clone --filter=blob:none https://github.com/Acellera/atm.git 'C:\ProgramData\BOINC\slots\24\pip-req-build-9adz7cfd' did not run successfully.
exit code: 128
See above for output.
note: This error originates from a subprocess, and is likely not a problem with pip.
python.exe: can't open file 'C:\\ProgramData\\BOINC\\slots\\24\\Scripts\\rbfe_production.exe': [Errno 2] No such file or directory
13:38:51 (3708): C:/Windows/system32/cmd.exe exited; CPU time 14.453125
13:38:51 (3708): app exit status: 0x16
13:38:51 (3708): called boinc_finish(195)
0 bytes in 0 Free Blocks.
256 bytes in 6 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 1875415 bytes.
Dumping objects ->
{3835255} normal block at 0x00000123E5F8FE70, 48 bytes long.
Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44
{3835244} normal block at 0x00000123E5F8FB60, 48 bytes long.
Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44
{3835233} normal block at 0x00000123E5F8FAF0, 48 bytes long.
Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61
{3835222} normal block at 0x00000123E5F8FE00, 48 bytes long.
Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44
{3835211} normal block at 0x00000123E5F8FA80, 48 bytes long.
Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61
{3835180} normal block at 0x00000123E7CA9990, 64 bytes long.
Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44
..\api\boinc_api.cpp(309) : {3835167} normal block at 0x00000123E5F8D970, 8 bytes long.
Data: < õå# > 00 00 F5 E5 23 01 00 00
{3833953} normal block at 0x00000123E5F8D240, 8 bytes long.
Data: <0å»ç# > 30 E5 BB E7 23 01 00 00
..\zip\boinc_zip.cpp(122) : {308} normal block at 0x00000123E5F80D00, 260 bytes long.
Data: < > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00
{293} normal block at 0x00000123E5F81EF0, 80 bytes long.
Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C
{292} normal block at 0x00000123E5F95CC0, 16 bytes long.
Data: <8bùå# > 38 62 F9 E5 23 01 00 00 00 00 00 00 00 00 00 00
{291} normal block at 0x00000123E5F95360, 16 bytes long.
Data: < bùå# > 10 62 F9 E5 23 01 00 00 00 00 00 00 00 00 00 00
{290} normal block at 0x00000123E5F90480, 32 bytes long.
Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D
{289} normal block at 0x00000123E5F95900, 16 bytes long.
Data: <èaùå# > E8 61 F9 E5 23 01 00 00 00 00 00 00 00 00 00 00
{288} normal block at 0x00000123E5F95810, 16 bytes long.
Data: <Àaùå# > C0 61 F9 E5 23 01 00 00 00 00 00 00 00 00 00 00
{287} normal block at 0x00000123E5F95C70, 16 bytes long.
Data: < aùå# > 98 61 F9 E5 23 01 00 00 00 00 00 00 00 00 00 00
{286} normal block at 0x00000123E5F95E50, 16 bytes long.
Data: <paùå# > 70 61 F9 E5 23 01 00 00 00 00 00 00 00 00 00 00
{285} normal block at 0x00000123E5F8F7E0, 48 bytes long.
Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F
{284} normal block at 0x00000123E5F958B0, 16 bytes long.
Data: <H ùå# > 48 00 F9 E5 23 01 00 00 00 00 00 00 00 00 00 00
{283} normal block at 0x00000123E5F90FC0, 32 bytes long.
Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69
{282} normal block at 0x00000123E5F95130, 16 bytes long.
Data: < ùå# > 20 00 F9 E5 23 01 00 00 00 00 00 00 00 00 00 00
{280} normal block at 0x00000123E5F95770, 16 bytes long.
Data: <øÿøå# > F8 FF F8 E5 23 01 00 00 00 00 00 00 00 00 00 00
{279} normal block at 0x00000123E5F95630, 16 bytes long.
Data: <Ðÿøå# > D0 FF F8 E5 23 01 00 00 00 00 00 00 00 00 00 00
{278} normal block at 0x00000123E5F95400, 16 bytes long.
Data: <¨ÿøå# > A8 FF F8 E5 23 01 00 00 00 00 00 00 00 00 00 00
{277} normal block at 0x00000123E5F95AE0, 16 bytes long.
Data: < ÿøå# > 80 FF F8 E5 23 01 00 00 00 00 00 00 00 00 00 00
{276} normal block at 0x00000123E5F94F50, 16 bytes long.
Data: <Xÿøå# > 58 FF F8 E5 23 01 00 00 00 00 00 00 00 00 00 00
{275} normal block at 0x00000123E5F90B40, 32 bytes long.
Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55
{274} normal block at 0x00000123E5F95720, 16 bytes long.
Data: <0ÿøå# > 30 FF F8 E5 23 01 00 00 00 00 00 00 00 00 00 00
{273} normal block at 0x00000123E5F8FF30, 320 bytes long.
Data: < Wùå# @ ùå# > 20 57 F9 E5 23 01 00 00 40 0B F9 E5 23 01 00 00
{272} normal block at 0x00000123E5F953B0, 16 bytes long.
Data: <Paùå# > 50 61 F9 E5 23 01 00 00 00 00 00 00 00 00 00 00
{271} normal block at 0x00000123E5F959A0, 16 bytes long.
Data: <(aùå# > 28 61 F9 E5 23 01 00 00 00 00 00 00 00 00 00 00
{270} normal block at 0x00000123E5F90360, 32 bytes long.
Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65
{269} normal block at 0x00000123E5F952C0, 16 bytes long.
Data: < aùå# > 00 61 F9 E5 23 01 00 00 00 00 00 00 00 00 00 00
{268} normal block at 0x00000123E5F90C00, 32 bytes long.
Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62
{267} normal block at 0x00000123E5F950E0, 16 bytes long.
Data: <H`ùå# > 48 60 F9 E5 23 01 00 00 00 00 00 00 00 00 00 00
{266} normal block at 0x00000123E5F95040, 16 bytes long.
Data: < `ùå# > 20 60 F9 E5 23 01 00 00 00 00 00 00 00 00 00 00
{265} normal block at 0x00000123E5F95DB0, 16 bytes long.
Data: <ø_ùå# > F8 5F F9 E5 23 01 00 00 00 00 00 00 00 00 00 00
{264} normal block at 0x00000123E5F95310, 16 bytes long.
Data: <Ð_ùå# > D0 5F F9 E5 23 01 00 00 00 00 00 00 00 00 00 00
{263} normal block at 0x00000123E5F95C20, 16 bytes long.
Data: <¨_ùå# > A8 5F F9 E5 23 01 00 00 00 00 00 00 00 00 00 00
{262} normal block at 0x00000123E5F95860, 16 bytes long.
Data: < _ùå# > 80 5F F9 E5 23 01 00 00 00 00 00 00 00 00 00 00
{260} normal block at 0x00000123E5F95540, 16 bytes long.
Data: <@üøå# > 40 FC F8 E5 23 01 00 00 00 00 00 00 00 00 00 00
{259} normal block at 0x00000123E5F8FC40, 40 bytes long.
Data: <@Uùå# Êç# > 40 55 F9 E5 23 01 00 00 90 99 CA E7 23 01 00 00
{258} normal block at 0x00000123E5F957C0, 16 bytes long.
Data: <`_ùå# > 60 5F F9 E5 23 01 00 00 00 00 00 00 00 00 00 00
{257} normal block at 0x00000123E5F954A0, 16 bytes long.
Data: <8_ùå# > 38 5F F9 E5 23 01 00 00 00 00 00 00 00 00 00 00
{256} normal block at 0x00000123E5F90F00, 32 bytes long.
Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F
{255} normal block at 0x00000123E5F956D0, 16 bytes long.
Data: < _ùå# > 10 5F F9 E5 23 01 00 00 00 00 00 00 00 00 00 00
{254} normal block at 0x00000123E5F95F10, 992 bytes long.
Data: <ÐVùå# ùå# > D0 56 F9 E5 23 01 00 00 00 0F F9 E5 23 01 00 00
{90} normal block at 0x00000123E5F90D80, 32 bytes long.
Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F
{89} normal block at 0x00000123E5F8CA70, 16 bytes long.
Data: <°Ü÷å# > B0 DC F7 E5 23 01 00 00 00 00 00 00 00 00 00 00
{88} normal block at 0x00000123E5F7DCB0, 40 bytes long.
Data: <pÊøå# ùå# > 70 CA F8 E5 23 01 00 00 80 0D F9 E5 23 01 00 00
{67} normal block at 0x00000123E5F8D1F0, 16 bytes long.
Data: < ê>'ö > 80 EA 3E 27 F6 7F 00 00 00 00 00 00 00 00 00 00
{66} normal block at 0x00000123E5F8D290, 16 bytes long.
Data: <@é>'ö > 40 E9 3E 27 F6 7F 00 00 00 00 00 00 00 00 00 00
{65} normal block at 0x00000123E5F8D8D0, 16 bytes long.
Data: <øW;'ö > F8 57 3B 27 F6 7F 00 00 00 00 00 00 00 00 00 00
{64} normal block at 0x00000123E5F8D9C0, 16 bytes long.
Data: <ØW;'ö > D8 57 3B 27 F6 7F 00 00 00 00 00 00 00 00 00 00
{63} normal block at 0x00000123E5F8CB10, 16 bytes long.
Data: <P ;'ö > 50 04 3B 27 F6 7F 00 00 00 00 00 00 00 00 00 00
{62} normal block at 0x00000123E5F8D650, 16 bytes long.
Data: <0 ;'ö > 30 04 3B 27 F6 7F 00 00 00 00 00 00 00 00 00 00
{61} normal block at 0x00000123E5F8CED0, 16 bytes long.
Data: <à ;'ö > E0 02 3B 27 F6 7F 00 00 00 00 00 00 00 00 00 00
{60} normal block at 0x00000123E5F8CCF0, 16 bytes long.
Data: < ;'ö > 10 04 3B 27 F6 7F 00 00 00 00 00 00 00 00 00 00
{59} normal block at 0x00000123E5F8CDE0, 16 bytes long.
Data: <p ;'ö > 70 04 3B 27 F6 7F 00 00 00 00 00 00 00 00 00 00
{58} normal block at 0x00000123E5F8D4C0, 16 bytes long.
Data: < À9'ö > 18 C0 39 27 F6 7F 00 00 00 00 00 00 00 00 00 00
Object dump complete.
</stderr_txt>
]]>
©2025 Universitat Pompeu Fabra