Task 38579912

Name JNK1_A20_A12_r0_1-QUICO_ATM_GAFF2_LOMAP_JNK1-0-5-RND8291_4
Workunit 31545041
Created 11 Dec 2025, 13:27:52 UTC
Sent 11 Dec 2025, 13:27:53 UTC
Report deadline 16 Dec 2025, 13:27:53 UTC
Received 16 Dec 2025, 12:42:21 UTC
Server state Over
Outcome Computation error
Client state Compute error
Exit status 195 (0x000000C3) EXIT_CHILD_FAILED
Computer ID 637154
Run time 5 min 20 sec
CPU time 17 sec
Validate state Invalid
Credit 0.00
Device peak FLOPS 22,278.46 GFLOPS
Application version ATM: Free energy calculations of protein-ligand binding v1.20 (cuda1121)
windows_x86_64
Peak working set size 55.55 MB
Peak swap size 39.73 MB
Peak disk usage 4.08 GB

Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<message>
The operating system cannot run (null).
 (0xc3) - exit code 195 (0xc3)</message>
<stderr_txt>
13:30:51 (13100): wrapper (7.9.26016): starting
13:30:51 (13100): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2)
QB_A20_A12_0.pdb
QB_A20_A12_0.xml
QB_A20_A12_equil.pdb
QB_A20_A12.inpcrd
QB_A20_A12_input.yaml
QB_A20_A12_mdlambda.pdb
QB_A20_A12_min.pdb
QB_A20_A12_npt.pdb
QB_A20_A12_out_merged_nowater.pdb
QB_A20_A12.pdb
QB_A20_A12.prmtop
QB_A20_A12_sys.xml
QB_A20_A12_therm.pdb
run.bat
run.sh
13:31:30 (13100): Library/usr/bin/tar.exe exited; CPU time 2.000000
13:31:30 (13100): wrapper: running C:/Windows/system32/cmd.exe (/c call Scripts\activate.bat && Scripts\conda-unpack.exe && run.bat)
WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'NewConnectionError('<pip._vendor.urllib3.connection.HTTPSConnection object at 0x00000267E7472A10>: Failed to establish a new connection: [Errno 11001] getaddrinfo failed')': /simple/pyaml/
WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'NewConnectionError('<pip._vendor.urllib3.connection.HTTPSConnection object at 0x00000267E747C610>: Failed to establish a new connection: [Errno 11001] getaddrinfo failed')': /simple/pyaml/
WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'NewConnectionError('<pip._vendor.urllib3.connection.HTTPSConnection object at 0x00000267E747CFD0>: Failed to establish a new connection: [Errno 11001] getaddrinfo failed')': /simple/pyaml/
WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'NewConnectionError('<pip._vendor.urllib3.connection.HTTPSConnection object at 0x00000267E747D890>: Failed to establish a new connection: [Errno 11001] getaddrinfo failed')': /simple/pyaml/
WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'NewConnectionError('<pip._vendor.urllib3.connection.HTTPSConnection object at 0x00000267E747E210>: Failed to establish a new connection: [Errno 11001] getaddrinfo failed')': /simple/pyaml/
ERROR: Could not find a version that satisfies the requirement pyaml (from versions: none)
ERROR: No matching distribution found for pyaml
  Running command git version
  git version 2.47.0.windows.1
  Running command git clone --filter=blob:none https://github.com/Acellera/atm.git 'C:\ProgramData\BOINC\slots\24\pip-req-build-zx9m4ahd'
  Cloning into 'C:\ProgramData\BOINC\slots\24\pip-req-build-zx9m4ahd'...
  fatal: unable to access 'https://github.com/Acellera/atm.git/': Could not resolve host: github.com
  error: subprocess-exited-with-error
  
  git clone --filter=blob:none https://github.com/Acellera/atm.git 'C:\ProgramData\BOINC\slots\24\pip-req-build-zx9m4ahd' did not run successfully.
  exit code: 128
  
  See above for output.
  
  note: This error originates from a subprocess, and is likely not a problem with pip.
  full command: git clone --filter=blob:none https://github.com/Acellera/atm.git 'C:\ProgramData\BOINC\slots\24\pip-req-build-zx9m4ahd'
  cwd: [inherit]
error: subprocess-exited-with-error

git clone --filter=blob:none https://github.com/Acellera/atm.git 'C:\ProgramData\BOINC\slots\24\pip-req-build-zx9m4ahd' did not run successfully.
exit code: 128

See above for output.

note: This error originates from a subprocess, and is likely not a problem with pip.
python.exe: can't open file 'C:\\ProgramData\\BOINC\\slots\\24\\Scripts\\rbfe_production.exe': [Errno 2] No such file or directory
13:33:00 (13100): C:/Windows/system32/cmd.exe exited; CPU time 15.062500
13:33:00 (13100): app exit status: 0x16
13:33:00 (13100): called boinc_finish(195)
0 bytes in 0 Free Blocks.
256 bytes in 6 Normal Blocks.
1144 bytes in 1 CRT Blocks.
0 bytes in 0 Ignore Blocks.
0 bytes in 0 Client Blocks.
Largest number used: 0 bytes.
Total allocations: 1879119 bytes.
Dumping objects ->
{3835255} normal block at 0x0000026A953E4450, 48 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835244} normal block at 0x0000026A953E43E0, 48 bytes long.
 Data: <HOME=C:\ProgramD> 48 4F 4D 45 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835233} normal block at 0x0000026A953E4A00, 48 bytes long.
 Data: <TMP=C:\ProgramDa> 54 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 61 
{3835222} normal block at 0x0000026A953E4990, 48 bytes long.
 Data: <TEMP=C:\ProgramD> 54 45 4D 50 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
{3835211} normal block at 0x0000026A953E4760, 48 bytes long.
 Data: <TMPDIR=C:\Progra> 54 4D 50 44 49 52 3D 43 3A 5C 50 72 6F 67 72 61 
{3835180} normal block at 0x0000026A970E86C0, 64 bytes long.
 Data: <PATH=C:\ProgramD> 50 41 54 48 3D 43 3A 5C 50 72 6F 67 72 61 6D 44 
..\api\boinc_api.cpp(309) : {3835167} normal block at 0x0000026A953DD040, 8 bytes long.
 Data: <  7&#149;j   > 00 00 37 95 6A 02 00 00 
{3833953} normal block at 0x0000026A953DD2C0, 8 bytes long.
 Data: <&#176;&#234;&#255;&#150;j   > B0 EA FF 96 6A 02 00 00 
..\zip\boinc_zip.cpp(122) : {308} normal block at 0x0000026A953D1500, 260 bytes long.
 Data: <                > 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 
{293} normal block at 0x0000026A953CF880, 80 bytes long.
 Data: </c call Scripts\> 2F 63 20 63 61 6C 6C 20 53 63 72 69 70 74 73 5C 
{292} normal block at 0x0000026A953E5EF0, 16 bytes long.
 Data: < d>&#149;j           > 88 64 3E 95 6A 02 00 00 00 00 00 00 00 00 00 00 
{291} normal block at 0x0000026A953E5EA0, 16 bytes long.
 Data: <`d>&#149;j           > 60 64 3E 95 6A 02 00 00 00 00 00 00 00 00 00 00 
{290} normal block at 0x0000026A953E0750, 32 bytes long.
 Data: <r0/checkpoint.xm> 72 30 2F 63 68 65 63 6B 70 6F 69 6E 74 2E 78 6D 
{289} normal block at 0x0000026A953E5770, 16 bytes long.
 Data: <8d>&#149;j           > 38 64 3E 95 6A 02 00 00 00 00 00 00 00 00 00 00 
{288} normal block at 0x0000026A953E5D10, 16 bytes long.
 Data: < d>&#149;j           > 10 64 3E 95 6A 02 00 00 00 00 00 00 00 00 00 00 
{287} normal block at 0x0000026A953E5B30, 16 bytes long.
 Data: <&#232;c>&#149;j           > E8 63 3E 95 6A 02 00 00 00 00 00 00 00 00 00 00 
{286} normal block at 0x0000026A953E51D0, 16 bytes long.
 Data: <&#192;c>&#149;j           > C0 63 3E 95 6A 02 00 00 00 00 00 00 00 00 00 00 
{285} normal block at 0x0000026A953E47D0, 48 bytes long.
 Data: <ComSpec=C:\Windo> 43 6F 6D 53 70 65 63 3D 43 3A 5C 57 69 6E 64 6F 
{284} normal block at 0x0000026A953E4FF0, 16 bytes long.
 Data: <xB>&#149;j           > 78 42 3E 95 6A 02 00 00 00 00 00 00 00 00 00 00 
{283} normal block at 0x0000026A953E0630, 32 bytes long.
 Data: <SystemRoot=C:\Wi> 53 79 73 74 65 6D 52 6F 6F 74 3D 43 3A 5C 57 69 
{282} normal block at 0x0000026A953E59F0, 16 bytes long.
 Data: <PB>&#149;j           > 50 42 3E 95 6A 02 00 00 00 00 00 00 00 00 00 00 
{280} normal block at 0x0000026A953E5E50, 16 bytes long.
 Data: <(B>&#149;j           > 28 42 3E 95 6A 02 00 00 00 00 00 00 00 00 00 00 
{279} normal block at 0x0000026A953E5360, 16 bytes long.
 Data: < B>&#149;j           > 00 42 3E 95 6A 02 00 00 00 00 00 00 00 00 00 00 
{278} normal block at 0x0000026A953E5C70, 16 bytes long.
 Data: <&#216;A>&#149;j           > D8 41 3E 95 6A 02 00 00 00 00 00 00 00 00 00 00 
{277} normal block at 0x0000026A953E59A0, 16 bytes long.
 Data: <&#176;A>&#149;j           > B0 41 3E 95 6A 02 00 00 00 00 00 00 00 00 00 00 
{276} normal block at 0x0000026A953E5E00, 16 bytes long.
 Data: < A>&#149;j           > 88 41 3E 95 6A 02 00 00 00 00 00 00 00 00 00 00 
{275} normal block at 0x0000026A953E0E10, 32 bytes long.
 Data: <CUDA_DEVICE=0 PU> 43 55 44 41 5F 44 45 56 49 43 45 3D 30 00 50 55 
{274} normal block at 0x0000026A953E5680, 16 bytes long.
 Data: <`A>&#149;j           > 60 41 3E 95 6A 02 00 00 00 00 00 00 00 00 00 00 
{273} normal block at 0x0000026A953E4160, 320 bytes long.
 Data: < V>&#149;j     >&#149;j   > 80 56 3E 95 6A 02 00 00 10 0E 3E 95 6A 02 00 00 
{272} normal block at 0x0000026A953E5900, 16 bytes long.
 Data: <&#160;c>&#149;j           > A0 63 3E 95 6A 02 00 00 00 00 00 00 00 00 00 00 
{271} normal block at 0x0000026A953E5590, 16 bytes long.
 Data: <xc>&#149;j           > 78 63 3E 95 6A 02 00 00 00 00 00 00 00 00 00 00 
{270} normal block at 0x0000026A953E0DB0, 32 bytes long.
 Data: <C:/Windows/syste> 43 3A 2F 57 69 6E 64 6F 77 73 2F 73 79 73 74 65 
{269} normal block at 0x0000026A953E56D0, 16 bytes long.
 Data: <Pc>&#149;j           > 50 63 3E 95 6A 02 00 00 00 00 00 00 00 00 00 00 
{268} normal block at 0x0000026A953E0330, 32 bytes long.
 Data: <xjvf input.tar.b> 78 6A 76 66 20 69 6E 70 75 74 2E 74 61 72 2E 62 
{267} normal block at 0x0000026A953E5CC0, 16 bytes long.
 Data: < b>&#149;j           > 98 62 3E 95 6A 02 00 00 00 00 00 00 00 00 00 00 
{266} normal block at 0x0000026A953E5950, 16 bytes long.
 Data: <pb>&#149;j           > 70 62 3E 95 6A 02 00 00 00 00 00 00 00 00 00 00 
{265} normal block at 0x0000026A953E5DB0, 16 bytes long.
 Data: <Hb>&#149;j           > 48 62 3E 95 6A 02 00 00 00 00 00 00 00 00 00 00 
{264} normal block at 0x0000026A953E5BD0, 16 bytes long.
 Data: < b>&#149;j           > 20 62 3E 95 6A 02 00 00 00 00 00 00 00 00 00 00 
{263} normal block at 0x0000026A953E5720, 16 bytes long.
 Data: <&#248;a>&#149;j           > F8 61 3E 95 6A 02 00 00 00 00 00 00 00 00 00 00 
{262} normal block at 0x0000026A953E5C20, 16 bytes long.
 Data: <&#208;a>&#149;j           > D0 61 3E 95 6A 02 00 00 00 00 00 00 00 00 00 00 
{260} normal block at 0x0000026A953E54A0, 16 bytes long.
 Data: <0E>&#149;j           > 30 45 3E 95 6A 02 00 00 00 00 00 00 00 00 00 00 
{259} normal block at 0x0000026A953E4530, 40 bytes long.
 Data: <&#160;T>&#149;j   &#192;&#134; &#151;j   > A0 54 3E 95 6A 02 00 00 C0 86 0E 97 6A 02 00 00 
{258} normal block at 0x0000026A953E50E0, 16 bytes long.
 Data: <&#176;a>&#149;j           > B0 61 3E 95 6A 02 00 00 00 00 00 00 00 00 00 00 
{257} normal block at 0x0000026A953E5400, 16 bytes long.
 Data: < a>&#149;j           > 88 61 3E 95 6A 02 00 00 00 00 00 00 00 00 00 00 
{256} normal block at 0x0000026A953E02D0, 32 bytes long.
 Data: <Library/usr/bin/> 4C 69 62 72 61 72 79 2F 75 73 72 2F 62 69 6E 2F 
{255} normal block at 0x0000026A953E5090, 16 bytes long.
 Data: <`a>&#149;j           > 60 61 3E 95 6A 02 00 00 00 00 00 00 00 00 00 00 
{254} normal block at 0x0000026A953E6160, 992 bytes long.
 Data: < P>&#149;j   &#208; >&#149;j   > 90 50 3E 95 6A 02 00 00 D0 02 3E 95 6A 02 00 00 
{90} normal block at 0x0000026A953E07B0, 32 bytes long.
 Data: <windows_x86_64__> 77 69 6E 64 6F 77 73 5F 78 38 36 5F 36 34 5F 5F 
{89} normal block at 0x0000026A953DD4A0, 16 bytes long.
 Data: <&#176;&#209;<&#149;j           > B0 D1 3C 95 6A 02 00 00 00 00 00 00 00 00 00 00 
{88} normal block at 0x0000026A953CD1B0, 40 bytes long.
 Data: <&#160;&#212;=&#149;j   &#176; >&#149;j   > A0 D4 3D 95 6A 02 00 00 B0 07 3E 95 6A 02 00 00 
{67} normal block at 0x0000026A953DD450, 16 bytes long.
 Data: < &#234;>'&#246;           > 80 EA 3E 27 F6 7F 00 00 00 00 00 00 00 00 00 00 
{66} normal block at 0x0000026A953DD1D0, 16 bytes long.
 Data: <@&#233;>'&#246;           > 40 E9 3E 27 F6 7F 00 00 00 00 00 00 00 00 00 00 
{65} normal block at 0x0000026A953DD9A0, 16 bytes long.
 Data: <&#248;W;'&#246;           > F8 57 3B 27 F6 7F 00 00 00 00 00 00 00 00 00 00 
{64} normal block at 0x0000026A953DD400, 16 bytes long.
 Data: <&#216;W;'&#246;           > D8 57 3B 27 F6 7F 00 00 00 00 00 00 00 00 00 00 
{63} normal block at 0x0000026A953DD630, 16 bytes long.
 Data: <P ;'&#246;           > 50 04 3B 27 F6 7F 00 00 00 00 00 00 00 00 00 00 
{62} normal block at 0x0000026A953DCE10, 16 bytes long.
 Data: <0 ;'&#246;           > 30 04 3B 27 F6 7F 00 00 00 00 00 00 00 00 00 00 
{61} normal block at 0x0000026A953DCFA0, 16 bytes long.
 Data: <&#224; ;'&#246;           > E0 02 3B 27 F6 7F 00 00 00 00 00 00 00 00 00 00 
{60} normal block at 0x0000026A953DCAA0, 16 bytes long.
 Data: <  ;'&#246;           > 10 04 3B 27 F6 7F 00 00 00 00 00 00 00 00 00 00 
{59} normal block at 0x0000026A953DD9F0, 16 bytes long.
 Data: <p ;'&#246;           > 70 04 3B 27 F6 7F 00 00 00 00 00 00 00 00 00 00 
{58} normal block at 0x0000026A953DD770, 16 bytes long.
 Data: < &#192;9'&#246;           > 18 C0 39 27 F6 7F 00 00 00 00 00 00 00 00 00 00 
Object dump complete.

</stderr_txt>
]]>


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