Ability to run our own peptide folding dynamics simulations?


Advanced search

Message boards : Multicore CPUs : Ability to run our own peptide folding dynamics simulations?
Message board moderation

To post messages, you must log in.

AuthorMessage
Derek T

Send message
Joined: 18 Aug 07
Posts: 1
Credit: 0
RAC: 0
Level

Scientific publications
wat
Message 305 - Posted: 18 Aug 2007, 22:33:52 UTC

I have pdb or Chem3D models of peptides that I would like to run in a distributed folding application. I can only simulate 2 peptides currently with my P4 workstation. It seems to work well but it crashes the system over long runs. I would like to carry the simulation time past 1-10 us with over 100-200 peptides to illustrate the effect that I am current researching. How can I go about submitting jobs to my own PS3?
ID: 305 · Rating: 0 · rate: Rate + / Rate - Report as offensive     Reply Quote
Profile GDF
Volunteer moderator
Project administrator
Project developer
Project tester
Volunteer developer
Volunteer tester
Project scientist

Send message
Joined: 14 Mar 07
Posts: 1958
Credit: 629,356
RAC: 0
Level
Gly
Scientific publications
watwatwatwatwat
Message 308 - Posted: 19 Aug 2007, 8:56:31 UTC - in response to Message 305.  
Last modified: 19 Aug 2007, 10:56:22 UTC

I have pdb or Chem3D models of peptides that I would like to run in a distributed folding application. I can only simulate 2 peptides currently with my P4 workstation. It seems to work well but it crashes the system over long runs. I would like to carry the simulation time past 1-10 us with over 100-200 peptides to illustrate the effect that I am current researching. How can I go about submitting jobs to my own PS3?


For research work using CellMD you may want to contact me at ps3grid\"at\"gmail.com directly because it is independent from PS3GRID.
ID: 308 · Rating: 0 · rate: Rate + / Rate - Report as offensive     Reply Quote

Message boards : Multicore CPUs : Ability to run our own peptide folding dynamics simulations?

©2026 Universitat Pompeu Fabra