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Send message Joined: 21 Feb 20 Posts: 1116 Credit: 40,839,470,595 RAC: 5,269 Level ![]() Scientific publications
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You seem to have something wrong with your BOINC client. it's impossible to say what, but your stderr output is just blank, which is not normal or an artifact of these tasks. since this is the same system that you saw weirdness with Asteroids also, i do think you have some kind of problem with BOINC itself. it's impossible for us to guess without access to your system though. this is what a Windows output should look like: http://www.gpugrid.net/result.php?resultid=33743283 09:54:40 (15568): wrapper (7.9.26016): starting so yes, there is still a problem on Windows (probably something wrong in the run.bat file, or a file missing from the environment package or input files. but you have a larger problem as well. while troubleshooting your asteroids problem, I had recommended to upgrade your BOINC client, and I think you did that, but you may have performed an in-place upgrade rather than a fresh install. I would recommend removing all aspects of BOINC on this system. completely delete everything. and re-install from a fresh install package. do not keep anything from the previous install.
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Send message Joined: 9 Jun 10 Posts: 19 Credit: 2,233,932,323 RAC: 0 Level ![]() Scientific publications ![]() ![]() ![]()
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Not sure if he has the same problem, but for me, the past few jobs on Windows are sent to the wrong platform AFAIC. Host: https://www.gpugrid.net/results.php?hostid=615737 Task example: https://www.gpugrid.net/result.php?resultid=33744637 Error: The operating system cannot run %1 I checked tasks where other hosts subsequently succeeded and they are all Linux. |
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Send message Joined: 30 Aug 10 Posts: 2 Credit: 2,916,839,094 RAC: 0 Level ![]() Scientific publications ![]() ![]()
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Windows task failer again, this is a copy of the run file up to the point it hit the error Setup environment C:\ProgramData\BOINC\slots\9>set HOMEPATH=C:\ProgramData\BOINC\slots\9 C:\ProgramData\BOINC\slots\9>set PATH=C:\ProgramData\BOINC\slots\9;C:\ProgramData\BOINC\slots\9\Library\usr\bin;C:\ProgramData\BOINC\slots\9\Library\bin;C:\Windows\system32;C:\Windows C:\ProgramData\BOINC\slots\9>set PYTHONPATH=C:\ProgramData\BOINC\slots\9\Lib\python3.9\site-packages C:\ProgramData\BOINC\slots\9>set SYSTEMROOT=C:\Windows Create a temporary directory C:\ProgramData\BOINC\slots\9>set TEMP=C:\ProgramData\BOINC\slots\9\tmp C:\ProgramData\BOINC\slots\9>mkdir C:\ProgramData\BOINC\slots\9\tmp Install AToM C:\ProgramData\BOINC\slots\9>tar.exe xvf atom.tar Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/ Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/.github/ Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/.github/workflows/ Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/.github/workflows/publish.yml Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/LICENSE Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/README.md Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/abfe_explicit.py Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/abfe_explicit_zrestr.py Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/abfe_structprep.py Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/async_re.py Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/atom_nnp_wrapper.py Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/environment.yml Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/ Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/ABFE/ Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/ABFE/fkbp/ Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/ABFE/fkbp/README.md Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/ABFE/fkbp/ligands/ Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/ABFE/fkbp/ligands/but.mol2 Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/ABFE/fkbp/ligands/dap.mol2 Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/ABFE/fkbp/ligands/dapp.mol2 Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/ABFE/fkbp/ligands/dmso.mol2 Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/ABFE/fkbp/ligands/dss.mol2 Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/ABFE/fkbp/ligands/prop.mol2 Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/ABFE/fkbp/ligands/thi.mol2 Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/ABFE/fkbp/receptor/ Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/ABFE/fkbp/receptor/fkbp.pdb Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/ABFE/fkbp/scripts/ Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/ABFE/fkbp/scripts/analyze.sh Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/ABFE/fkbp/scripts/asyncre_template.cntl Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/ABFE/fkbp/scripts/equil_template.py Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/ABFE/fkbp/scripts/free_energies_template.sh Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/ABFE/fkbp/scripts/mdlambda_template.py Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/ABFE/fkbp/scripts/mintherm_template.py Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/ABFE/fkbp/scripts/nodefile Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/ABFE/fkbp/scripts/prep_template.sh Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/ABFE/fkbp/scripts/run_template.sh Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/ABFE/fkbp/scripts/runopenmm Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/ABFE/fkbp/scripts/setup-atm.sh Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/ABFE/fkbp/scripts/setup-settings.sh Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/ABFE/fkbp/scripts/uwham_analysis.R Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/ABFE/scripts/ Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/ABFE/scripts/analyze.sh Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/ABFE/scripts/nodefile Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/ABFE/scripts/runopenmm Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/ABFE/scripts/uwham_analysis.R Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/ABFE/temoa-g1/ Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/ABFE/temoa-g1/README.md Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/ABFE/temoa-g1/equil.py Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/ABFE/temoa-g1/mdlambda.py Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/ABFE/temoa-g1/mintherm.py Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/ABFE/temoa-g1/npt.py Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/ABFE/temoa-g1/temoa-g1.inpcrd Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/ABFE/temoa-g1/temoa-g1.prmtop Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/ABFE/temoa-g1/temoa-g1_asyncre.cntl Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/ Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/cdk2/ Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/cdk2/README.md Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/cdk2/ligands/ Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/cdk2/ligands/1H1Q.mol2 Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/cdk2/ligands/1H1Q.sdf Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/cdk2/ligands/1H1R.mol2 Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/cdk2/ligands/1H1R.sdf Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/cdk2/ligands/1H1S.mol2 Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/cdk2/ligands/1H1S.sdf Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/cdk2/ligands/1OI9.mol2 Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/cdk2/ligands/1OI9.sdf Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/cdk2/ligands/1OIU.mol2 Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/cdk2/ligands/1OIU.sdf Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/cdk2/ligands/1OIY.mol2 Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/cdk2/ligands/1OIY.sdf Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/cdk2/receptor/ Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/cdk2/receptor/cdk2.pdb Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/cdk2/scripts/ Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/cdk2/scripts/analyze.sh Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/cdk2/scripts/asyncre_template.cntl Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/cdk2/scripts/free_energies_template.sh Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/cdk2/scripts/prep_template.sh Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/cdk2/scripts/run_template.sh Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/cdk2/scripts/setup-atm.sh Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/cdk2/scripts/setup-settings.sh Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/cdk2/scripts/uwham_analysis.R Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/eralpha/ Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/eralpha/README.md Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/eralpha/ligands/ Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/eralpha/ligands/2d.mol2 Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/eralpha/ligands/2e.mol2 Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/eralpha/ligands/3a.mol2 Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/eralpha/ligands/3b.mol2 Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/eralpha/receptor/ Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/eralpha/receptor/eralpha.pdb Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/eralpha/scripts/ Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/eralpha/scripts/analyze.sh Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/eralpha/scripts/asyncre_template.cntl Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/eralpha/scripts/equil_template.py Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/eralpha/scripts/free_energies_template.sh Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/eralpha/scripts/mintherm_template.py Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/eralpha/scripts/nodefile Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/eralpha/scripts/prep_template.sh Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/eralpha/scripts/run_template.sh Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/eralpha/scripts/runopenmm Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/eralpha/scripts/setup-atm.sh Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/eralpha/scripts/setup-settings.sh Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/eralpha/scripts/uwham_analysis.R Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/scripts/ Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/scripts/analyze.sh Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/scripts/nodefile Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/scripts/runopenmm Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/scripts/uwham_analysis.R Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/temoa-g1-g4/ Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/temoa-g1-g4/README.md Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/temoa-g1-g4/equil.py Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/temoa-g1-g4/mintherm.py Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/temoa-g1-g4/npt.py Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/temoa-g1-g4/temoa-g1-g4.inpcrd Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/temoa-g1-g4/temoa-g1-g4.prmtop Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/RBFE/temoa-g1-g4/temoa-g1-g4_asyncre.cntl Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/README.md Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/scripts/ Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/scripts/analyze.sh Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/scripts/nodefile Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/scripts/runopenmm Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/examples/scripts/uwham_analysis.R Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/gibbs_sampling.py Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/local_openmm_transport.py Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/ommreplica.py Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/ommsystem.py Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/ommworker.py Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/openmm_async_re.py Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/rbfe_explicit.py Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/rbfe_explicit_sync.py Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/rbfe_explicit_zrestr.py Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/rbfe_structprep.py Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/setup.py Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/sync/ Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/sync/__init__.py Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/sync/atm.py Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/sync/worker.py Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/temperatureRE_explicit.py Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/transport.py Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/utils/ Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/utils/__init__.py Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/utils/logging.conf Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/utils/singal_guard.py Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6/utils/timer.py C:\ProgramData\BOINC\slots\9>python.exe -m pip install ./Acellera-AToM-OpenMM-* || exit 13 |
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Send message Joined: 30 Aug 10 Posts: 2 Credit: 2,916,839,094 RAC: 0 Level ![]() Scientific publications ![]() ![]()
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Just to add, I've now had multiple failers over the last 10 minutes, all of them are failing at the same point. Hope this helps with the Windows debug. |
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Send message Joined: 1 Jan 15 Posts: 1166 Credit: 12,260,898,501 RAC: 1 Level ![]() Scientific publications ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]()
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Ian&Steve C. wrote yesterday: You seem to have something wrong with your BOINC client. it's impossible to say what, but your stderr output is just blank, which is not normal or an artifact of these tasks. since this is the same system that you saw weirdness with Asteroids also, i do think you have some kind of problem with BOINC itself. it's impossible for us to guess without access to your system though. yes, you are right, there is obviously something wrong with this BOINC installation. I will remove it and install it from scratch, once the currently running Climateprediction tasks (which use to last up 14 days or even longer) are through. Nevertheless, it's sad to learn that the Windows version of the ATM app is still faulty. What I don't understand is: do they not test it before hundreds or thousands faulty tasks are being sent out? In fact, a testrun in their own lab would have shown within 5 minutes that still something is wrong. I think these 5 minutes would be worth the time, right? |
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Send message Joined: 15 Jul 20 Posts: 95 Credit: 2,550,803,412 RAC: 203 Level ![]() Scientific publications
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fully agree Nevertheless, it's sad to learn that the Windows version of the ATM app is still faulty. What I don't understand is: do they not test it before hundreds or thousands faulty tasks are being sent out? In fact, a testrun in their own lab would have shown within 5 minutes that still something is wrong. I think these 5 minutes would be worth the time, right? Néanmoins, il est triste d'apprendre que la version Windows de l'application ATM est toujours défectueuse. Ce que je ne comprends pas, c'est : ne le testent-ils pas avant que des centaines ou des milliers de tâches défectueuses ne soient envoyées ? En fait, un test dans leur propre laboratoire aurait montré en 5 minutes que quelque chose ne va toujours pas. Je pense que ces 5 minutes en vaudraient la peine, non ? |
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Send message Joined: 13 Dec 17 Posts: 1419 Credit: 9,119,446,190 RAC: 731 Level ![]() Scientific publications ![]() ![]() ![]() ![]()
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Steve, the researcher, in his first few posts about these tasks said that they don't have any Windows machines in the lab. They only have Linux. I'll post to Gianni that he needs to help get the Windows apps sorted out. |
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Send message Joined: 4 Mar 20 Posts: 18 Credit: 3,119,821,062 RAC: 1,589 Level ![]() Scientific publications
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Been 10 months since this was posted. Where is the "hoped for" windows version? Why are you wasting the potential of all of our Windows machines and new fast GPU's? |
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Send message Joined: 11 May 10 Posts: 68 Credit: 12,293,491,875 RAC: 2,606 Level ![]() Scientific publications ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]()
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Send message Joined: 27 May 21 Posts: 54 Credit: 1,004,151,720 RAC: 0 Level ![]() Scientific publications
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Hey Keith, If you contact Gianni, pass on the following info I found from my testing. There are 2 issues on the same line in this piece of code in run.bat: @echo Install AToM tar.exe xvf atom.tar python.exe -m pip install ./Acellera-AToM-OpenMM-* || exit 13 python.exe -m pip list 1. The path separator '/' is wrong for Windows, should be '\' instead. This makes pip install choke. This should be a trivial fix. 2. Windows CMD shell scripts do not support inline expansion of the '*' wildcard. So pip install doesn't find the module in the location it expects, being "Acellera-AToM-OpenMM-*" There are a few ways to fix this: - Use the full name of the package folder 'Acellera-AToM-OpenMM-2dd310b8027c68262906a8946f807896b49947b6' This also implies that if this '2dd310b8027c68262906a8946f807896b49947b6' is variable, run.bat should be changed every time - Generate a new atom.tar with a fixed folder name, for example always using 'Acellera-AToM-OpenMM' as the folder name of the package inside atom.tar - and adapting the run.bat pathname to .\Acellera-AToM-OpenMM accordingly - use some scripting magic to pre-expand the wildcard into a variable (e.g. ATOM) and passing that variable to pip install. Something like this could work, but may have mixed results on different Windows installs - so solution 1 or 2 preferred. @echo Install AToM tar.exe xvf atom.tar set PARM1=.\Acellera-AToM-OpenMM-* for %%A in (%PARM1%) do set ATOM=%%A python.exe -m pip install %ATOM% || exit 13 python.exe -m pip list |
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Send message Joined: 13 Dec 17 Posts: 1419 Credit: 9,119,446,190 RAC: 731 Level ![]() Scientific publications ![]() ![]() ![]() ![]()
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I posted to Gianni and he replied that he copied my message to Steve. I will try and get a response from Steve directly via PM and reference your post and analysis. |
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Send message Joined: 30 Jun 14 Posts: 153 Credit: 129,654,684 RAC: 0 Level ![]() Scientific publications ![]() ![]() ![]() ![]() ![]()
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Heres the top half of my dump: <core_client_version>7.24.1</core_client_version> <![CDATA[ <message> The operating system cannot run %1. (0xc3) - exit code 195 (0xc3)</message> <stderr_txt> 00:14:03 (19992): wrapper (7.9.26016): starting 00:14:03 (19992): wrapper: running python.exe (bin/conda-unpack) 00:14:13 (19992): python.exe exited; CPU time 0.000000 00:14:13 (19992): wrapper: running Library/usr/bin/tar.exe (xjvf input.tar.bz2) atom.tar JNK1_m38_m58_0.xml JNK1_m38_m58_asyncre.cntl JNK1_m38_m58.inpcrd JNK1_m38_m58.prmtop run.bat run.sh 00:14:14 (19992): Library/usr/bin/tar.exe exited; CPU time 0.015625 00:14:14 (19992): wrapper: running C:/Windows/system32/cmd.exe (/c call run.bat) ERROR: Invalid requirement: './Acellera-AToM-OpenMM-*' 00:14:18 (19992): C:/Windows/system32/cmd.exe exited; CPU time 0.000000 00:14:18 (19992): app exit status: 0xd 00:14:18 (19992): called boinc_finish(195) 0 bytes in 0 Free Blocks. 310 bytes in 4 Normal Blocks. 1144 bytes in 1 CRT Blocks. 0 bytes in 0 Ignore Blocks. 0 bytes in 0 Client Blocks. Largest number used: 0 bytes. Total allocations: 434076 bytes. Dumping objects -> |
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Send message Joined: 13 Dec 17 Posts: 1419 Credit: 9,119,446,190 RAC: 731 Level ![]() Scientific publications ![]() ![]() ![]() ![]()
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The python package is the large 1.9GB package that downloads to every host at first running of the ATMBeta tasks. It is static and sets up the python environment in the project folder. It only needs to be downloaded once, not for every task. The name won't change until Steve updates or make changes to it. If he fixes the package for Windows, the name should change. But he could then make the filename static and reference it directly without paths. |
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Send message Joined: 21 Dec 23 Posts: 51 Credit: 0 RAC: 0 Level ![]() Scientific publications ![]() |
Thank you all for the windows debugging info. I am looking into this! |
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Send message Joined: 1 Jan 15 Posts: 1166 Credit: 12,260,898,501 RAC: 1 Level ![]() Scientific publications ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]()
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Thank you all for the windows debugging info. I am looking into this! thank you Steve, I'm looking forward to crunching ATMs with my altogether 6 GPUs on Windows |
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Send message Joined: 27 May 21 Posts: 54 Credit: 1,004,151,720 RAC: 0 Level ![]() Scientific publications
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Thank you all for the windows debugging info. I am looking into this! Thanks for working on this, Steve! I just got a WU called "T0_1-STEVE_TEST_ATM-1-5-RND5320" where I noticed you went for a pre-untarred folder "Acellera-AToM-OpenMM-gitrepo" inside the input file. I'm happy to report that this went past the pip install statement without a hitch and is now happily simulating! Good job! |
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Send message Joined: 27 May 21 Posts: 54 Credit: 1,004,151,720 RAC: 0 Level ![]() Scientific publications
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And done successfully! https://www.gpugrid.net/result.php?resultid=33751815 I've got another one in queue that is not yet corrected, so I'm going to suspend GPUGRID for now to avoid a string of error-WU's until you let us know the fix has been incorporated in all new WU's. |
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Send message Joined: 21 Dec 23 Posts: 51 Credit: 0 RAC: 0 Level ![]() Scientific publications ![]() |
Great thanks for the help! The new changes have been passed onto the researchers. Next round of jobs should have the fix. (Please note I can't inject this fix into already sent WU's) |
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Send message Joined: 21 Dec 23 Posts: 51 Credit: 0 RAC: 0 Level ![]() Scientific publications ![]() |
Just to explain a bit about how this app currently works. The "app" is a python environment we package as a zipfile (~1GB). This is downloaded once. It will be re-downloaded if we update the app. Updating an app is a rather time consuming process and error prone so we try and avoid it unless absolutely necessary. In each work unit we include three main things: 1. The input molecular structures. 1. A few scripts that run the simulation. 3. A git code folder that contains the python code (Atom-OpenMM, ~a few MB size folder). The code folder could have been packaged into the "app" python environment. However, this code is something we update regularly with different features so it is easier to include it on a per work unit basis. |
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Send message Joined: 13 Dec 17 Posts: 1419 Credit: 9,119,446,190 RAC: 731 Level ![]() Scientific publications ![]() ![]() ![]() ![]()
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