Coronavirus crunching - Folding@home

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Jacob Klein

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Message 53905 - Posted: 13 Mar 2020, 13:20:47 UTC
Last modified: 13 Mar 2020, 13:26:34 UTC

Hey community,

If you would like to contribute to an immediate need (especially while GPU work is dwindling at GPUGrid)...

I recommend installing Folding@home and setting it to work on "Any disease", which will allow your resources to be used for new COVID-19 Coronavirus tasks. They have spun up some GPU projects a few days ago, and even some CPU projects more recently. Links below.

The software is a bit clunky, but it is also relatively easy to set up. For the short term, I am allocating all my beefy GPUs resources toward working on Coronavirus, and about half of my CPU resources.

Note: I have a lot of passion for GPUGrid, and will definitely come back to it. I'm just recommending a temporary (few weeks/months?) switch, to help an immediate need.

https://foldingathome.org/

https://foldingathome.org/2020/03/10/covid19-update/

https://foldingforum.org/viewtopic.php?f=24&t=32287

https://www.facebook.com/permalink.php?story_fbid=2953361518064379&id=136059519794607

Thanks,
Jacob Klein
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Message 53922 - Posted: 15 Mar 2020, 8:58:34 UTC
Last modified: 15 Mar 2020, 8:59:06 UTC

Note: I have a lot of passion for GPUGrid, and will definitely come back to it. I'm just recommending a temporary (few weeks/months?) switch, to help an immediate need.


+1
I would love to see HCF1 protein folding and interaction simulations to help my little boy... someday.
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Toni
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Message 53923 - Posted: 15 Mar 2020, 11:58:14 UTC - in response to Message 53922.  
Last modified: 15 Mar 2020, 11:59:00 UTC

I am planning SARS-CoV-2 work.


(especially while GPU work is dwindling at GPUGrid


GPU work is NOT dwindling here.
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Jacob Klein

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Message 53924 - Posted: 15 Mar 2020, 14:23:58 UTC
Last modified: 15 Mar 2020, 15:00:15 UTC

Excellent !!
Also, sorry for being wrong about GPUGrid work supply.
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Message 53925 - Posted: 15 Mar 2020, 14:56:45 UTC - in response to Message 53923.  

I am planning SARS-CoV-2 work.

Toni, Outstanding!!!
Count me in.
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Message 53929 - Posted: 16 Mar 2020, 14:18:03 UTC - in response to Message 53923.  

Excellent! Thanks for the update. Hope to get some of those SARS-CoV-2 work units soon!

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Message 53932 - Posted: 17 Mar 2020, 13:58:26 UTC

Rosetta@home also has COVID-19 WUs (CPU only).

https://boinc.bakerlab.org/rosetta/forum_thread.php?id=13533
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Message 53933 - Posted: 17 Mar 2020, 15:00:43 UTC

Toni
I have this WU- https://www.gpugrid.net/workunit.php?wuid=17678083 stuck since the outage, awaiting validation. Can anything set it free?
Thanks
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Message 53937 - Posted: 17 Mar 2020, 20:40:05 UTC - in response to Message 53932.  
Last modified: 17 Mar 2020, 20:41:22 UTC

Rosetta@home also has COVID-19 WUs (CPU only).

https://boinc.bakerlab.org/rosetta/forum_thread.php?id=13533

Rosetta code is flawed in how it handles your L3 Cache. You need to budget 5 MB L3 Cache per Rosetta and MIP (WCG MIP uses Rosetta code).
<app_config>
    <app>
        <name>rosetta</name>
             <!-- needs 5 MB L3 cache per WU -->
             <!-- needs 1.5 GB RAM per WU -->
             <!-- Xeon E5-2686 v4,  18c36t,  32 GB,  45 MB L3 Cache  -->
             <max_concurrent>9</max_concurrent>
    </app>
    <app>
        <name>minirosetta</name>
              <!-- needs 5 MB L3 cache per WU -->
              <max_concurrent>1</max_concurrent>
    </app>
<project_max_concurrent>9</project_max_concurrent>
</app_config>
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Message 53940 - Posted: 18 Mar 2020, 7:59:49 UTC - in response to Message 53923.  

I am planning SARS-CoV-2 work.

You better upgrade the server(s) before you do! FAH servers are overwhelmed.
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Message 53949 - Posted: 19 Mar 2020, 1:47:36 UTC - in response to Message 53923.  

Toni, will these work units be GPU, CPU, both? I know to some that may be a silly question but GPUGrid has dabbled with GPU, CPU, ARM (Android), and virtualbox in the past. Just wanted to know what to look forward to.
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Message 53955 - Posted: 20 Mar 2020, 14:54:12 UTC - in response to Message 53932.  

Rosetta@home also has COVID-19 WUs (CPU only).

https://boinc.bakerlab.org/rosetta/forum_thread.php?id=13533

Thank you, Chilean!

I've already joint to Rosetta@home, as it is a CPU only project and, therefore, complementary to GPUGrid
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Message 53956 - Posted: 21 Mar 2020, 2:45:08 UTC - in response to Message 53940.  

You better upgrade the server(s) before you do!


So goes the conundrum of distributed computing...
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Message 53957 - Posted: 21 Mar 2020, 6:08:38 UTC - in response to Message 53955.  

I've already joint to Rosetta@home, as it is a CPU only project and, therefore, complementary to GPUGrid

+ 1
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Message 53958 - Posted: 21 Mar 2020, 10:19:49 UTC - in response to Message 53956.  

You better upgrade the server(s) before you do!

So goes the conundrum of distributed computing...
The real conundrum is the preparedness of the public health services and/or governments which is put to the test by this world wide pandemic.
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Message 53959 - Posted: 21 Mar 2020, 14:11:23 UTC - in response to Message 53958.  

You better upgrade the server(s) before you do!

So goes the conundrum of distributed computing...
The real conundrum is the preparedness of the public health services and/or governments which is put to the test by this world wide pandemic.
Also:
1. The unsanitary food processing practices of China are antediluvian.
2. ImPOTUS has ravaged science in America and our response is many weeks behind where it should be. The US government fell on their face.
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Jacob Klein

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Message 53960 - Posted: 21 Mar 2020, 15:48:01 UTC
Last modified: 21 Mar 2020, 15:49:37 UTC

Okay okay ....
:) Back to Crunching for Coronavirus! :)

Does anybody know of any cool methods to somehow have my GPUs crunch Folding@home if they have a work unit available to them, but if they don't (Since there are server outages there sometimes) automatically switch over to BOINC?

I have .bat files that can turn BOINC GPU Computing from GPU Suspended to Use GPU based on preferences ... but I guess I need to do more research into finding a way to detect Folding@Home slot fulfillment for my GPU devices.

I guess I'll be starting here:
https://github.com/FoldingAtHome/fah-control/wiki/3rd-party-FAHClient-API
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Message 53963 - Posted: 21 Mar 2020, 19:27:19 UTC - in response to Message 53960.  

As folding@home is in the media now with many new users and servers are already overloaded I would recommend to stay at Rosetta for CPU and GPUgrid for GPU.

I already tell that other new users of folding@home which cannot get enough work units yet.
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Message 53966 - Posted: 21 Mar 2020, 20:01:59 UTC - in response to Message 53960.  

Okay okay ....
:) Back to Crunching for Coronavirus! :)

Does anybody know of any cool methods to somehow have my GPUs crunch Folding@home if they have a work unit available to them, but if they don't (Since there are server outages there sometimes) automatically switch over to BOINC?

I have .bat files that can turn BOINC GPU Computing from GPU Suspended to Use GPU based on preferences ... but I guess I need to do more research into finding a way to detect Folding@Home slot fulfillment for my GPU devices.

I guess I'll be starting here:
https://github.com/FoldingAtHome/fah-control/wiki/3rd-party-FAHClient-API

If you were following the greatest BOINC team site in the world, which everyone should be ;) you'd know that all you need to do is set exclusions in cc_config for FahCore_21.exe and 22. This works for GPU, which is all that I'm doing.

	<exclusive_app>FahCore_21.exe</exclusive_app>
	<exclusive_app>FahCore_22.exe</exclusive_app>

Set your preferred project to a resource share of zero and you're good to go. I was using PrimeGrid for this at first because I wasn't expecting the FAH client to be out of work for hours at a time. The current GPUGrid work is fine for this, in fact I've run more GPUGrid work than FAH lately.
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Message 53967 - Posted: 21 Mar 2020, 22:16:39 UTC

Regarding BOINC projects: If any doubt left to me about Rosetta@home implication in COVID-19 research... Now it's solved. com'on!


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