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Message boards : Number crunching : MULTISCALELAB_MJHARVEY Output file absent/Error 193

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Dr Who Fan
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Message 37077 - Posted: 19 Jun 2014 | 6:28:04 UTC

Task# 12214305 Ended with Exit status 193 (0xc1) EXIT_SIGNAL

Found this in the Detailed Message

GPUGRID 6/19/2014 12:35:20 AM Output file 8155-DOCK_MULTISCALELAB_MJHARVEY_647_WT_ZINC80-0-1-RND0754_0_0 for task 8155-DOCK_MULTISCALELAB_MJHARVEY_647_WT_ZINC80-0-1-RND0754_0 absent


Stderr output
<core_client_version>7.0.36</core_client_version>
<![CDATA[
<message>
process exited with code 193 (0xc1, -63)
</message>
<stderr_txt>
stackdumps unavailable
# (BOINC) Mapping [ligand.tar]->[ligand.tar]
# (BOINC) Mapping [results.tar]->[../../projects/www.gpugrid.net/8155-DOCK_MULTISCALELAB_MJHARVEY_647_WT_ZINC80-0-1-RND0754_0_0]
# (BOINC) Mapping [protein.pdbqt]->[protein.pdbqt]
# (BOINC) Mapping [flexible.pdbqt]->[flexible.pdbqt]
nextfile: reading [in]
[.]
[..]
[ligand-28909.pdbqt]
NEXTFILE : [out] [ligand-28909.pdbqt]
copy [in/ligand-28909.pdbqt]->[ligand.pdbqt]
# (BOINC) Mapping [input.dat]->[input.dat]
# (BOINC) Mapping [progress.log]->[progress.log]
# (BOINC) Mapping [protein.pdbqt]->[protein.pdbqt]
# (BOINC) Mapping [ligand.pdbqt]->[ligand.pdbqt]
# (BOINC) Mapping [out.pdbqt]->[out.pdbqt]
copy [out.pdbqt]->[out/ligand-28909.pdbqt]
nextfile: reading [in]
[.]
[..]
[ligand-28909.pdbqt]
NEXTFILE : [out] [ligand-28909.pdbqt]
[ligand-2890.pdbqt]
NEXTFILE : [out] [ligand-2890.pdbqt]
copy [in/ligand-2890.pdbqt]->[ligand.pdbqt]
# (BOINC) Mapping [input.dat]->[input.dat]
# (BOINC) Mapping [progress.log]->[progress.log]
# (BOINC) Mapping [protein.pdbqt]->[protein.pdbqt]
# (BOINC) Mapping [ligand.pdbqt]->[ligand.pdbqt]
# (BOINC) Mapping [out.pdbqt]->[out.pdbqt]
copy [out.pdbqt]->[out/ligand-2890.pdbqt]
nextfile: reading [in]
[.]
[..]
[ligand-28909.pdbqt]
NEXTFILE : [out] [ligand-28909.pdbqt]
[ligand-2890.pdbqt]
NEXTFILE : [out] [ligand-2890.pdbqt]
[ligand-28910.pdbqt]
NEXTFILE : [out] [ligand-28910.pdbqt]
copy [in/ligand-28910.pdbqt]->[ligand.pdbqt]
# (BOINC) Mapping [input.dat]->[input.dat]
# (BOINC) Mapping [progress.log]->[progress.log]
# (BOINC) Mapping [protein.pdbqt]->[protein.pdbqt]
# (BOINC) Mapping [ligand.pdbqt]->[ligand.pdbqt]
SIGSEGV: segmentation violation

Exiting...

</stderr_txt>
]]>

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Dr Who Fan
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Joined: 24 Mar 14
Posts: 4
Credit: 506,809
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wat
Message 37139 - Posted: 24 Jun 2014 | 1:42:24 UTC

Got another one today with same error message. Task was running on Android OS/NEXUS 7 tablet.

GPUGRID 23-06-2014 18:14 Output file 9473-DOCK_MULTISCALELAB_MJHARVEY_671_WT_ZINC104-0-1-RND6560_0_0 for task 9473-DOCK_MULTISCALELAB_MJHARVEY_671_WT_ZINC104-0-1-RND6560_0 absent


Name 9473-DOCK_MULTISCALELAB_MJHARVEY_671_WT_ZINC104-0-1-RND6560_0
Workunit 9650476

ILE : [out] [ligand-39518.pdbqt]
[ligand-39519.pdbqt]
NEXTFILE : [out] [ligand-39519.pdbqt]
[ligand-3951.pdbqt]
NEXTFILE : [out] [ligand-3951.pdbqt]
[ligand-39520.pdbqt]
NEXTFILE : [out] [ligand-39520.pdbqt]
copy [in/ligand-39520.pdbqt]->[ligand.pdbqt]
# (BOINC) Mapping [input.dat]->[input.dat]
# (BOINC) Mapping [progress.log]->[progress.log]
# (BOINC) Mapping [protein.pdbqt]->[protein.pdbqt]
# (BOINC) Mapping [ligand.pdbqt]->[ligand.pdbqt]
# (BOINC) Mapping [out.pdbqt]->[out.pdbqt]
copy [out.pdbqt]->[out/ligand-39520.pdbqt]
nextfile: reading [in]
[.]
[..]
[ligand-39517.pdbqt]
NEXTFILE : [out] [ligand-39517.pdbqt]
[ligand-39518.pdbqt]
NEXTFILE : [out] [ligand-39518.pdbqt]
[ligand-39519.pdbqt]
NEXTFILE : [out] [ligand-39519.pdbqt]
[ligand-3951.pdbqt]
NEXTFILE : [out] [ligand-3951.pdbqt]
[ligand-39520.pdbqt]
NEXTFILE : [out] [ligand-39520.pdbqt]
[ligand-39521.pdbqt]
NEXTFILE : [out] [ligand-39521.pdbqt]
copy [in/ligand-39521.pdbqt]->[ligand.pdbqt]
# (BOINC) Mapping [input.dat]->[input.dat]
# (BOINC) Mapping [progress.log]->[progress.log]
# (BOINC) Mapping [protein.pdbqt]->[protein.pdbqt]
# (BOINC) Mapping [ligand.pdbqt]->[ligand.pdbqt]
SIGSEGV: segmentation violation

Exiting...

</stderr_txt>
]]>

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Message boards : Number crunching : MULTISCALELAB_MJHARVEY Output file absent/Error 193

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