Advanced search

Message boards : News : New publication: High-Throughput Automated Preparation and Simulation of Membrane Proteins with HTMD

Author Message
Toni
Volunteer moderator
Project administrator
Project developer
Project scientist
Send message
Joined: 9 Dec 08
Posts: 554
Credit: 4,273,184
RAC: 0
Level
Ala
Scientific publications
watwatwatwat
Message 47756 - Posted: 9 Aug 2017 | 8:47:03 UTC

Dears, we added badges for a recent methodological publication, High-Throughput Automated Preparation and Simulation of Membrane Proteins with HTMD.

We describe a procedure to automatically set-up membrane simulations, and show it working en masse on all membrane structures published in the OPM database (hence the WU names you may have seen in the past).

Membrane proteins are quite interesting because they are involved in extra-cellular signalling, not to mention how many of them are drug targets; simulations are especially time-consuming to set-up, and we tried to develop tools to make the process less error-prone.

Thanks to all contributors!

[CSF] Thomas H.V. Dupont
Send message
Joined: 20 Jul 14
Posts: 518
Credit: 55,078,050
RAC: 38,633
Level
Thr
Scientific publications
watwatwat
Message 47757 - Posted: 9 Aug 2017 | 8:55:43 UTC

Thanks for the heads-up, Toni!
Congrats to you, Stefan and Gianni :)
____________
[CSF] Thomas H.V. Dupont
Founder of the team CRUNCHERS SANS FRONTIERES
www.crunchersansfrontieres.org

PappaLitto
Send message
Joined: 21 Mar 16
Posts: 239
Credit: 955,117,381
RAC: 3,478,910
Level
Glu
Scientific publications
watwat
Message 47758 - Posted: 9 Aug 2017 | 11:02:46 UTC

Congratulations to all crunchers and scientists!

kain
Send message
Joined: 3 Sep 14
Posts: 104
Credit: 127,669,166
RAC: 24,617
Level
Cys
Scientific publications
watwatwatwat
Message 47759 - Posted: 9 Aug 2017 | 15:19:26 UTC

Great news! Thank you for your work :)

Trotador
Send message
Joined: 25 Mar 12
Posts: 82
Credit: 1,054,713,620
RAC: 1,001,656
Level
Met
Scientific publications
watwatwatwatwatwatwatwatwatwat
Message 47761 - Posted: 9 Aug 2017 | 16:09:50 UTC

Congratulations!

Gunde
Send message
Joined: 6 Jan 15
Posts: 35
Credit: 2,328,185,948
RAC: 2,819,154
Level
Phe
Scientific publications
watwatwat
Message 47763 - Posted: 9 Aug 2017 | 16:38:25 UTC

Thanks Toni

Dayle Diamond
Send message
Joined: 5 Dec 12
Posts: 66
Credit: 997,610,634
RAC: 759,063
Level
Glu
Scientific publications
watwatwatwatwatwatwatwat
Message 47765 - Posted: 10 Aug 2017 | 0:18:25 UTC

Very cool! Is there a way to get a link to the PDF of the paper sent to the inbox of users who donated to make it happen?

$40 to access it for 48 hours seems pretty expensive given that so many of us paid so much in electrical and equipment costs to make this paper possible.

PappaLitto
Send message
Joined: 21 Mar 16
Posts: 239
Credit: 955,117,381
RAC: 3,478,910
Level
Glu
Scientific publications
watwat
Message 47766 - Posted: 10 Aug 2017 | 11:33:46 UTC - in response to Message 47765.

Very cool! Is there a way to get a link to the PDF of the paper sent to the inbox of users who donated to make it happen?

$40 to access it for 48 hours seems pretty expensive given that so many of us paid so much in electrical and equipment costs to make this paper possible.

+1

kain
Send message
Joined: 3 Sep 14
Posts: 104
Credit: 127,669,166
RAC: 24,617
Level
Cys
Scientific publications
watwatwatwat
Message 47767 - Posted: 10 Aug 2017 | 11:46:43 UTC

I don't think it is possible.

Profile [AF>Libristes] hermes
Send message
Joined: 11 Nov 16
Posts: 17
Credit: 146,296,445
RAC: 620,279
Level
Cys
Scientific publications
watwat
Message 47791 - Posted: 19 Aug 2017 | 10:46:35 UTC
Last modified: 19 Aug 2017 | 10:53:22 UTC

I asked the same question in another post (to have access to the publication).
Nonetheless the university ask for our help but when why ask to have acess to the publication, none respond. Just so wrong !

I have doctors/scientist in a french research center (INRA) on my friend list and I will have access to it (depends on the revew). But, If GPUGrid doesn't take time to at least respond, I will search for another project to help.

David

gianni
Send message
Joined: 11 Jul 08
Posts: 15
Credit: 105,098
RAC: 0
Level

Scientific publications
watwatwat
Message 47877 - Posted: 14 Sep 2017 | 15:09:53 UTC - in response to Message 47791.

all pdfs usually end up here sooner or later

http://www.multiscalelab.org/publications

Post to thread

Message boards : News : New publication: High-Throughput Automated Preparation and Simulation of Membrane Proteins with HTMD